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KJC3_000746-T2, KJC3_000746-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000746-T2
Unique NameKJC3_000746-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:1736673..1738749+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000746-T2 ID=KJC3_000746-T2|Name=KJC3_000746-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2077bp|location=Sequence derived from alignment at ch1:1736673..1738749+ (Aspergillus niger KJC3)
GGACCCTCCCTGCTGGAACCGAATCCAACAATGTGGATACATGCCTAGAT
AGACCTTTCCATTCTAACTTTCATGACACCCGACGCACTCTTGGGTTGAC
GCACTCGCTTCCTTTTAGTGCAAGCATGGTCGATTCCGATGAAGAGTACA
TAGGAGAAATCTCTGAGGATGAGGATGAAAACAATCTTCTACCAGGGTCT
CGCGGAGAGACTACGTCCGCATCCCGCTCCAAGAGGAGAAAGCACCGTGG
AGGCGCAGAATGGGAGGTCTCGAGAACATGGGAAACCTTAGTTGAAGGTG
CCGACGGTACAATCAGCTCTACAGTTGAAGGGCTTCTCGAGGCTGGGAAA
AGGAAAAGGTAGGGTGTACTTTCAAGCCGAGTTAGTCTCAGTTTTGATAA
CGGTTCGAGCTGAGTTCCATGTCTTCGCGCTTGCAGGCTCCTCAGAGATA
CGACTCCTTTACAACGGGGTATAATCCGTCATCTCATCTTGATTATAGAT
CTGTCACAATCTATGACCGAGAAAGATCTCCGACCGACACGTTACTTATT
GTCCTTACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATC
CCATCTCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGA
GTCAGTGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCATCCAATC
ACTGCGAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCG
AAATGGCTCGTGGTGCCTTGTTGTATGTCTTTTCCACGGTAGCGTCGTAC
ACACTCAATGATAAGGTGGACTAATTTGTCTTGCAACAGCCATACTCCAA
GCCATGGCACCCGTGAGATCTTCGTCATTTTTGGCTCCCTCCTTTCCTCT
GATCCCGGTGATATTCACCAAACAATTACTACGCTTATAAATGATAAAAT
ACGTGTTGGAATCGTGGGCCTTGCTGCTCAAGTGGCAATCTGTCGCGAAA
TTTGTGGCAAGACTAACGGGGGCGACGATACCACATACGGTGTAGCACTC
AATGAACAACATTTCCGTGACCTTGTGATGAATGTGACAACACCACCAGC
CACATACTCTCAGAAGCAGTCCACAAGCTCTCTCTTGATGATGGGTTTTC
CATCACGAACCGTTGAGGCTTACCCTTCACTTTGTGCATGCCATTCCAAG
CCTTCTCGTGGGGGCTATCTGTGCTCACGGTGCAACAGCAAGGTTTGTGG
TCTCCCTGCCGAGTGTCCTTCCTGTGGTCTTACTTTGATTCTTTCAACCC
ATCTTGCTCGGTCGTATCACCATCTGTTTCCCCTTATGAACTGGGTGGAA
GTTTCGTGGCAACACGCTTCACGCAGTAGTGTCTGTTTCGCTTGTGGGAT
ATCCTTTCCATCAGTACCACCCAAGGAGCAGTGGCATACTACAGAGGGAC
AAACAAAGGGAATAAGCGTAAGCAGCCGCTATGAATGTACTGTTTGCAGA
AACCATTTTTGCATTGACTGTGACCTTTTCGCTCATGAGGTTGTGCACAA
CTGCCCTGGCTGCCAAAGCAAGATGATAGTTGCCACGAGTTCTGAGCCCT
CTCAGGACCACGAAGCTCTAGACAGGATGGATACCTCTGCATGATCATAT
GGTTGATTCGAATAAAATATCAATATAATGACCACGGGGCTTACTTCTCG
ACCGGTTGGATAGATGCCCCCGCCATCGCTCTCGCTAGCGCGACGAGTTT
GTTATCAATCAAGCTGTCAAACTAACCAACAGTCCAACACAGTGACATAG
GGCCCGAGGCGGACTATATATGCTCTAATTATTATCAGTCGAGATGTCGG
TGCGAATAAGGCCATCAAATTCTGTAGAGTATGTCTATGCCACCTAACTA
GAAAAGATATCTTCTGGAATATGTTAAGCATGATGGAATGGTTCTTCGAC
ATGGTGGAGTTGCGACCACGAAATAGCAAATATGACAATTTACAGATTAT
TCCAGACGCTCCAATCCATCGCTTCCGACTCCTCCCAATTGATTGACAAG
GAGCTATGATAGAAAAATATTGTCAAA
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Coding sequence (CDS) from alignment at ch1:1736673..1738749+

>KJC3_000746-T2 ID=KJC3_000746-T2|Name=KJC3_000746-T2|organism=Aspergillus niger KJC3|type=CDS|length=2130bp|location=Sequence derived from alignment at ch1:1736673..1738749+ (Aspergillus niger KJC3)
ATGACCGAGAAAGATCTCCGACCGACACGTTACTTATTGTCCTTACGGTA
TGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATCCCATCTCTCAAC
TCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGAGTCAGTGATATG
AGTGGAAACCCTACTGAGCATATTAGTGCCATCCAATCACTGCGAGACCA
GGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCGAAATGGCTCGTG
GTGCCTTGTTCCATACTCCAAGCCATGGCACCCGTGAGATCTTCGTCATT
TTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCAAACAATTAC
TACGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCCTTGCTGCTC
AAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGGGGCGACGAT
ACCACATACGGTGTAGCACTCAATGAACAACATTTCCGTGACCTTGTGAT
GAATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGTCCACAAGCT
CTCTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCTTACCCTTCA
CTTTGTGCATGCCATTCCAAGCCTTCTCGTGGGGGCTATCTGTGCTCACG
GTGCAACAGCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTTCCTGTGGTC
TTACTTTGATTCTTTCAACCCATCTTGCTCGGTCGTATCACCATCTGTTT
CCCCTTATGAACTGGGTGGAAGTTTCGTGGCAACACGCTTCACGCAGTAG
TGTCTGTTTCGCTTGTGGGATATCCTTTCCATCAGTACCACCCAAGGAGC
AGTGGCATACTACAGAGGGACAAACAAAGGGAATAAGCGTAAGCAGCCGC
TATGAATGTACTGTTTGCAGAAACCATTTTTGCATTGACTGTGACCTTTT
CGCTCATGAGGTTGTGCACAACTGCCCTGGCTGCCAAAGCAAGATGATAG
TTGCCACGAGTTCTGAGCCCTCTCAGGACCACGAAGCTCTAGACAGGATG
GATACCTCTGCATGAATGACCGAGAAAGATCTCCGACCGACACGTTACTT
ATTGTCCTTACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAA
ATCCCATCTCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTC
AGAGTCAGTGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCATCCA
ATCACTGCGAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCT
TCGAAATGGCTCGTGGTGCCTTGTTCCATACTCCAAGCCATGGCACCCGT
GAGATCTTCGTCATTTTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATAT
TCACCAAACAATTACTACGCTTATAAATGATAAAATACGTGTTGGAATCG
TGGGCCTTGCTGCTCAAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACT
AACGGGGGCGACGATACCACATACGGTGTAGCACTCAATGAACAACATTT
CCGTGACCTTGTGATGAATGTGACAACACCACCAGCCACATACTCTCAGA
AGCAGTCCACAAGCTCTCTCTTGATGATGGGTTTTCCATCACGAACCGTT
GAGGCTTACCCTTCACTTTGTGCATGCCATTCCAAGCCTTCTCGTGGGGG
CTATCTGTGCTCACGGTGCAACAGCAAGGTTTGTGGTCTCCCTGCCGAGT
GTCCTTCCTGTGGTCTTACTTTGATTCTTTCAACCCATCTTGCTCGGTCG
TATCACCATCTGTTTCCCCTTATGAACTGGGTGGAAGTTTCGTGGCAACA
CGCTTCACGCAGTAGTGTCTGTTTCGCTTGTGGGATATCCTTTCCATCAG
TACCACCCAAGGAGCAGTGGCATACTACAGAGGGACAAACAAAGGGAATA
AGCGTAAGCAGCCGCTATGAATGTACTGTTTGCAGAAACCATTTTTGCAT
TGACTGTGACCTTTTCGCTCATGAGGTTGTGCACAACTGCCCTGGCTGCC
AAAGCAAGATGATAGTTGCCACGAGTTCTGAGCCCTCTCAGGACCACGAA
GCTCTAGACAGGATGGATACCTCTGCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006351transcription, DNA-templated
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SSL1KJC3_000746Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000746-T2.utr5p1KJC3_000746-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000746-T2.exon1KJC3_000746-T2.exon1Aspergillus niger KJC3exon
KJC3_000746-T2.exon2KJC3_000746-T2.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000746-T2.cdsKJC3_000746-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000746-T2.utr3p1KJC3_000746-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000746-T2KJC3_000746-T2-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262ILV
DBxrefInterPro:IPR013087
DBxrefInterPro:IPR007198
DBxrefInterPro:IPR013083
DBxrefInterPro:IPR012170
DBxrefInterPro:IPR036465
DBxrefInterPro:IPR004595
DBxrefPFAM:PF13519
DBxrefPFAM:PF00092
DBxrefPFAM:PF04056
Product variant 2
Producttranscription initiation factor TFIIH subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:1736673..1738749 +
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