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KJC3_000746-T4, KJC3_000746-T4 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000746-T4
Unique NameKJC3_000746-T4
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:1736673..1738749+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000746-T4 ID=KJC3_000746-T4|Name=KJC3_000746-T4|organism=Aspergillus niger KJC3|type=mRNA|length=2077bp|location=Sequence derived from alignment at ch1:1736673..1738749+ (Aspergillus niger KJC3)
GGACCCTCCCTGCTGGAACCGAATCCAACAATGTGGATACATGCCTAGAT
AGACCTTTCCATTCTAACTTTCATGACACCCGACGCACTCTTGGGTTGAC
GCACTCGCTTCCTTTTAGTGCAAGCATGGTCGATTCCGATGAAGAGTACA
TAGGAGAAATCTCTGAGGATGAGGATGAAAACAATCTTCTACCAGGGTCT
CGCGGAGAGACTACGTCCGCATCCCGCTCCAAGAGGAGAAAGCACCGTGG
AGGCGCAGAATGGGAGGTCTCGAGAACATGGGAAACCTTAGTTGAAGGTG
CCGACGGTACAATCAGCTCTACAGTTGAAGGGCTTCTCGAGGCTGGGAAA
AGGAAAAGGTAGGGTGTACTTTCAAGCCGAGTTAGTCTCAGTTTTGATAA
CGGTTCGAGCTGAGTTCCATGTCTTCGCGCTTGCAGGCTCCTCAGAGATA
CGACTCCTTTACAACGGGGTATAATCCGTCATCTCATCTTGATTATAGAT
CTGTCACAATCTATGACCGAGAAAGATCTCCGACCGACACGTTACTTATT
GTCCTTACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATC
CCATCTCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGA
GTCAGTGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCATCCAATC
ACTGCGAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCG
AAATGGCTCGTGGTGCCTTGTTGTATGTCTTTTCCACGGTAGCGTCGTAC
ACACTCAATGATAAGGTGGACTAATTTGTCTTGCAACAGCCATACTCCAA
GCCATGGCACCCGTGAGATCTTCGTCATTTTTGGCTCCCTCCTTTCCTCT
GATCCCGGTGATATTCACCAAACAATTACTACGCTTATAAATGATAAAAT
ACGTGTTGGAATCGTGGGCCTTGCTGCTCAAGTGGCAATCTGTCGCGAAA
TTTGTGGCAAGACTAACGGGGGCGACGATACCACATACGGTGTAGCACTC
AATGAACAACATTTCCGTGACCTTGTGATGAATGTGACAACACCACCAGC
CACATACTCTCAGAAGCAGTCCACAAGCTCTCTCTTGATGATGGGTTTTC
CATCACGAACCGTTGAGGCTTACCCTTCACTTTGTGCATGCCATTCCAAG
CCTTCTCGTGGGGGCTATCTGTGCTCACGGTGCAACAGCAAGGTTTGTGG
TCTCCCTGCCGAGTGTCCTTCCTGTGGTCTTACTTTGATTCTTTCAACCC
ATCTTGCTCGGTCGTATCACCATCTGTTTCCCCTTATGAACTGGGTGGAA
GTTTCGTGGCAACACGCTTCACGCAGTAGTGTCTGTTTCGCTTGTGGGAT
ATCCTTTCCATCAGTACCACCCAAGGAGCAGTGGCATACTACAGAGGGAC
AAACAAAGGGAATAAGCGTAAGCAGCCGCTATGAATGTACTGTTTGCAGA
AACCATTTTTGCATTGACTGTGACCTTTTCGCTCATGAGGTTGTGCACAA
CTGCCCTGGCTGCCAAAGCAAGATGATAGTTGCCACGAGTTCTGAGCCCT
CTCAGGACCACGAAGCTCTAGACAGGATGGATACCTCTGCATGATCATAT
GGTTGATTCGAATAAAATATCAATATAATGACCACGGGGCTTACTTCTCG
ACCGGTTGGATAGATGCCCCCGCCATCGCTCTCGCTAGCGCGACGAGTTT
GTTATCAATCAAGCTGTCAAACTAACCAACAGTCCAACACAGTGACATAG
GGCCCGAGGCGGACTATATATGCTCTAATTATTATCAGTCGAGATGTCGG
TGCGAATAAGGCCATCAAATTCTGTAGAGTATGTCTATGCCACCTAACTA
GAAAAGATATCTTCTGGAATATGTTAAGCATGATGGAATGGTTCTTCGAC
ATGGTGGAGTTGCGACCACGAAATAGCAAATATGACAATTTACAGATTAT
TCCAGACGCTCCAATCCATCGCTTCCGACTCCTCCCAATTGATTGACAAG
GAGCTATGATAGAAAAATATTGTCAAA
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Coding sequence (CDS) from alignment at ch1:1736673..1738749+

>KJC3_000746-T4 ID=KJC3_000746-T4|Name=KJC3_000746-T4|organism=Aspergillus niger KJC3|type=CDS|length=4896bp|location=Sequence derived from alignment at ch1:1736673..1738749+ (Aspergillus niger KJC3)
ATGGTCGATTCCGATGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGA
TGAAAACAATCTTCTACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCC
GCTCCAAGAGGAGAAAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGA
ACATGGGAAACCTTAGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGT
TGAAGGGCTTCTCGAGGCTGGGAAAAGGAAAAGGCTCCTCAGAGATACGA
CTCCTTTACAACGGGGTATAATCCGTCATCTCATCTTGATTATAGATCTG
TCACAATCTATGACCGAGAAAGATCTCCGACCGACACGTTACTTATTGTC
CTTACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATCCCA
TCTCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGAGTC
AGTGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCATCCAATCACT
GCGAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCGAAA
TGGCTCGTGGTGCCTTGTTCCATACTCCAAGCCATGGCACCCGTGAGATC
TTCGTCATTTTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCA
AACAATTACTACGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCC
TTGCTGCTCAAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGG
GGCGACGATACCACATACGGTGTAGCACTCAATGAACAACATTTCCGTGA
CCTTGTGATGAATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGT
CCACAAGCTCTCTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCT
TACCCTTCACTTTGTGCATGCCATTCCAAGCCTTCTCGTGGGGGCTATCT
GTGCTCACGGTGCAACAGCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTT
CCTGTGGTCTTACTTTGATTCTTTCAACCCATCTTGCTCGGTCGTATCAC
CATCTGTTTCCCCTTATGAACTGGGTGGAAGTTTCGTGGCAACACGCTTC
ACGCAGTAGTGTCTGTTTCGCTTGTGGGATATCCTTTCCATCAGTACCAC
CCAAGGAGCAGTGGCATACTACAGAGGGACAAACAAAGGGAATAAGCCAA
GATGATAGTTGCCACGAGTTCTGAATGGTCGATTCCGATGAAGAGTACAT
AGGAGAAATCTCTGAGGATGAGGATGAAAACAATCTTCTACCAGGGTCTC
GCGGAGAGACTACGTCCGCATCCCGCTCCAAGAGGAGAAAGCACCGTGGA
GGCGCAGAATGGGAGGTCTCGAGAACATGGGAAACCTTAGTTGAAGGTGC
CGACGGTACAATCAGCTCTACAGTTGAAGGGCTTCTCGAGGCTGGGAAAA
GGAAAAGGCTCCTCAGAGATACGACTCCTTTACAACGGGGTATAATCCGT
CATCTCATCTTGATTATAGATCTGTCACAATCTATGACCGAGAAAGATCT
CCGACCGACACGTTACTTATTGTCCTTACGGTATGCACAAGAGTTCGTGA
GGGAATTTTTCGAGCAAAATCCCATCTCTCAACTCGGCGTTCTTGGCCTC
AAAGATGGACTGGCGGTCAGAGTCAGTGATATGAGTGGAAACCCTACTGA
GCATATTAGTGCCATCCAATCACTGCGAGACCAGGATCCGAAAGGTCTTC
CTAGTCTGCAAAATGGCTTCGAAATGGCTCGTGGTGCCTTGTTCCATACT
CCAAGCCATGGCACCCGTGAGATCTTCGTCATTTTTGGCTCCCTCCTTTC
CTCTGATCCCGGTGATATTCACCAAACAATTACTACGCTTATAAATGATA
AAATACGTGTTGGAATCGTGGGCCTTGCTGCTCAAGTGGCAATCTGTCGC
GAAATTTGTGGCAAGACTAACGGGGGCGACGATACCACATACGGTGTAGC
ACTCAATGAACAACATTTCCGTGACCTTGTGATGAATGTGACAACACCAC
CAGCCACATACTCTCAGAAGCAGTCCACAAGCTCTCTCTTGATGATGGGT
TTTCCATCACGAACCGTTGAGGCTTACCCTTCACTTTGTGCATGCCATTC
CAAGCCTTCTCGTGGGGGCTATCTGTGCTCACGGTGCAACAGCAAGGTTT
GTGGTCTCCCTGCCGAGTGTCCTTCCTGTGGTCTTACTTTGATTCTTTCA
ACCCATCTTGCTCGGTCGTATCACCATCTGTTTCCCCTTATGAACTGGGT
GGAAGTTTCGTGGCAACACGCTTCACGCAGTAGTGTCTGTTTCGCTTGTG
GGATATCCTTTCCATCAGTACCACCCAAGGAGCAGTGGCATACTACAGAG
GGACAAACAAAGGGAATAAGCCAAGATGATAGTTGCCACGAGTTCTGAAT
GGTCGATTCCGATGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGATG
AAAACAATCTTCTACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCCGC
TCCAAGAGGAGAAAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGAAC
ATGGGAAACCTTAGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGTTG
AAGGGCTTCTCGAGGCTGGGAAAAGGAAAAGGCTCCTCAGAGATACGACT
CCTTTACAACGGGGTATAATCCGTCATCTCATCTTGATTATAGATCTGTC
ACAATCTATGACCGAGAAAGATCTCCGACCGACACGTTACTTATTGTCCT
TACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATCCCATC
TCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGAGTCAG
TGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCATCCAATCACTGC
GAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCGAAATG
GCTCGTGGTGCCTTGTTCCATACTCCAAGCCATGGCACCCGTGAGATCTT
CGTCATTTTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCAAA
CAATTACTACGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCCTT
GCTGCTCAAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGGGG
CGACGATACCACATACGGTGTAGCACTCAATGAACAACATTTCCGTGACC
TTGTGATGAATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGTCC
ACAAGCTCTCTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCTTA
CCCTTCACTTTGTGCATGCCATTCCAAGCCTTCTCGTGGGGGCTATCTGT
GCTCACGGTGCAACAGCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTTCC
TGTGGTCTTACTTTGATTCTTTCAACCCATCTTGCTCGGTCGTATCACCA
TCTGTTTCCCCTTATGAACTGGGTGGAAGTTTCGTGGCAACACGCTTCAC
GCAGTAGTGTCTGTTTCGCTTGTGGGATATCCTTTCCATCAGTACCACCC
AAGGAGCAGTGGCATACTACAGAGGGACAAACAAAGGGAATAAGCCAAGA
TGATAGTTGCCACGAGTTCTGAATGGTCGATTCCGATGAAGAGTACATAG
GAGAAATCTCTGAGGATGAGGATGAAAACAATCTTCTACCAGGGTCTCGC
GGAGAGACTACGTCCGCATCCCGCTCCAAGAGGAGAAAGCACCGTGGAGG
CGCAGAATGGGAGGTCTCGAGAACATGGGAAACCTTAGTTGAAGGTGCCG
ACGGTACAATCAGCTCTACAGTTGAAGGGCTTCTCGAGGCTGGGAAAAGG
AAAAGGCTCCTCAGAGATACGACTCCTTTACAACGGGGTATAATCCGTCA
TCTCATCTTGATTATAGATCTGTCACAATCTATGACCGAGAAAGATCTCC
GACCGACACGTTACTTATTGTCCTTACGGTATGCACAAGAGTTCGTGAGG
GAATTTTTCGAGCAAAATCCCATCTCTCAACTCGGCGTTCTTGGCCTCAA
AGATGGACTGGCGGTCAGAGTCAGTGATATGAGTGGAAACCCTACTGAGC
ATATTAGTGCCATCCAATCACTGCGAGACCAGGATCCGAAAGGTCTTCCT
AGTCTGCAAAATGGCTTCGAAATGGCTCGTGGTGCCTTGTTCCATACTCC
AAGCCATGGCACCCGTGAGATCTTCGTCATTTTTGGCTCCCTCCTTTCCT
CTGATCCCGGTGATATTCACCAAACAATTACTACGCTTATAAATGATAAA
ATACGTGTTGGAATCGTGGGCCTTGCTGCTCAAGTGGCAATCTGTCGCGA
AATTTGTGGCAAGACTAACGGGGGCGACGATACCACATACGGTGTAGCAC
TCAATGAACAACATTTCCGTGACCTTGTGATGAATGTGACAACACCACCA
GCCACATACTCTCAGAAGCAGTCCACAAGCTCTCTCTTGATGATGGGTTT
TCCATCACGAACCGTTGAGGCTTACCCTTCACTTTGTGCATGCCATTCCA
AGCCTTCTCGTGGGGGCTATCTGTGCTCACGGTGCAACAGCAAGGTTTGT
GGTCTCCCTGCCGAGTGTCCTTCCTGTGGTCTTACTTTGATTCTTTCAAC
CCATCTTGCTCGGTCGTATCACCATCTGTTTCCCCTTATGAACTGGGTGG
AAGTTTCGTGGCAACACGCTTCACGCAGTAGTGTCTGTTTCGCTTGTGGG
ATATCCTTTCCATCAGTACCACCCAAGGAGCAGTGGCATACTACAGAGGG
ACAAACAAAGGGAATAAGCCAAGATGATAGTTGCCACGAGTTCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006351transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SSL1KJC3_000746Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000746-T4KJC3_000746-T4-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000746-T4.utr5p1KJC3_000746-T4.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000746-T4.exon1KJC3_000746-T4.exon1Aspergillus niger KJC3exon
KJC3_000746-T4.exon2KJC3_000746-T4.exon2Aspergillus niger KJC3exon
KJC3_000746-T4.exon3KJC3_000746-T4.exon3Aspergillus niger KJC3exon
KJC3_000746-T4.exon4KJC3_000746-T4.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000746-T4.cdsKJC3_000746-T4.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000746-T4.utr3p1KJC3_000746-T4.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036465
DBxrefInterPro:IPR007198
DBxrefInterPro:IPR012170
DBxrefInterPro:IPR002035
DBxrefPFAM:PF04056
DBxrefPFAM:PF07975
Product variant 4
Producttranscription initiation factor TFIIH subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:1736673..1738749 +
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