You are here

Home

KJC3_000756-T1, KJC3_000756-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000756-T1
Unique NameKJC3_000756-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:1769051..1770212-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000756-T1 ID=KJC3_000756-T1|Name=KJC3_000756-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1162bp|location=Sequence derived from alignment at ch1:1769051..1770212- (Aspergillus niger KJC3)
GCCATGATCAATATGTGTTCAAAACGAAAATCAGTATTTTCGCTACCCTC
TGATAGCGAAAAAAAGAAAGCAAAGGTAAACATAAATGCTCGTTTATCTC
GGCTTACACTGACATCTTGGAAGTACAATGATGACTTGCAGCTTGCGAAA
GATTCAATCCCCTCCACCCACAGCCCGCAAAGCAAAGAGAATAATTTCGT
CCTTCTGAGAACATTGCTTCAGGATATTATACAGAGCCACGGCGATACTC
AAAGCCACGGATCCCAGACCGACACCGATATCTTTACTGCAGCTACTGAG
CTCGACGCTGCATTACAGCGTGCAGCAGGTACCATAAAATCTACTACCAA
ACCCTATGAGGGTGCAACACTAGCGCTAGAGACATCGGAAGCCAATGTGG
AGTGTTCTTTGCCCCCTTTACCTCCAATATTGGATGACATGCTTGAGAGG
GCAGTTTTCACACACCCGGGTGTCAGCAACAACTCCGGAGCTACTTACGA
TCGGCTCGAGGTTCTTGGAGATGCATATATTGAACTTATCTCCACGAAGC
TCATCTGGGACAGATTCCAGGATATTCCTTCGGGTCAAATATCTCAAATA
CGCGAGAGACTTGTAAAGAATGAGACACTGTCTGATTATGCGTCTAAGTA
CGGACTCGACAGCAGGGCTTCCGTACCTCCGGACTATCGGAAGCAACCCA
AAAGATGGCTTAAAACCAAGGCGGACATCTTTGAGGCTTATGTAGCTGCC
GTTGTCCTGTCAGATACCAGCAATGGTTATTGTGTGGCTGAAGAATGGCT
AAGACAATTGTGGTCTCCGAAGCTTGAAAAGCTTGAAAAACCAAAATCCG
CCTTGCATGCCAAAGAAGCACTCGCAAAGAAAATCATGGGCAAGGGGATT
AAGCTCAATTACATCGATGAGCGCCCTCCTGCTCAGCGCGGCAGGGGGCT
ACAGACATATTTTATCGGAGTTTATCTCACTGGCTGGGGCTGGAACCATA
AGCACCTTGGCTCTGGTCAAGGTTCTAATAAAGCAATTGCAGGAAATGAG
GCGGCCGAGCAGGCATTGTTAAATGAACCTCTAATCGAAAAGATCATGGA
AGTTAAGAAAGCACATCTAGCACAAAGATAAATTTTTTTCAATCAGCCTA
TGTTCAGTCCAG
back to top

Coding sequence (CDS) from alignment at ch1:1769051..1770212-

>KJC3_000756-T1 ID=KJC3_000756-T1|Name=KJC3_000756-T1|organism=Aspergillus niger KJC3|type=CDS|length=2160bp|location=Sequence derived from alignment at ch1:1769051..1770212- (Aspergillus niger KJC3)
TACAATGATGACTTGCAGCTTGCGAAAGATTCAATCCCCTCCACCCACAG
CCCGCAAAGCAAAGAGAATAATTTCGTCCTTCTGAGAACATTGCTTCAGG
ATATTATACAGAGCCACGGCGATACTCAAAGCCACGGATCCCAGACCGAC
ACCGATATCTTTACTGCAGCTACTGAGCTCGACGCTGCATTACAGCGTGC
AGCAGGTACCATAAAATCTACTACCAAACCCTATGAGGGTGCAACACTAG
CGCTAGAGACATCGGAAGCCAATGTGGAGTGTTCTTTGCCCCCTTTACCT
CCAATATTGGATGACATGCTTGAGAGGGCAGTTTTCACACACCCGGGTGT
CAGCAACAACTCCGGAGCTACTTACGATCGGCTCGAGGTTCTTGGAGATG
CATATATTGAACTTATCTCCACGAAGCTCATCTGGGACAGATTCCAGGAT
ATTCCTTCGGGTCAAATATCTCAAATACGCGAGAGACTTGTAAAGAATGA
GACACTGTCTGATTATGCGTCTAAGTACGGACTCGACAGCAGGGCTTCCG
TACCTCCGGACTATCGGAAGCAACCCAAAAGATGGCTTAAAACCAAGGCG
GACATCTTTGAGGCTTATGTAGCTGCCGTTGTCCTGTCAGATACCAGCAA
TGGTTATTGTGTGGCTGAAGAATGGCTAAGACAATTGTGGTCTCCGAAGC
TTGAAAAGCTTGAAAAACCAAAATCCGCCTTGCATGCCAAAGAAGCACTC
GCAAAGAAAATCATGGGCAAGGGGATTAAGCTCAATTACATCGATGAGCG
CCCTCCTGCTCAGCGCGGCAGGGGGCTACAGACATATTTTATCGGAGTTT
ATCTCACTGGCTGGGGCTGGAACCATAAGCACCTTGGCTCTGGTCAAGGT
TCTAATAAAGCAATTGCAGGAAATGAGGCGGCCGAGCAGGCATTGTTAAA
TGAACCTCTAATCGAAAAGATCATGGAAGTTAAGAAAGCACATCTAGCAC
AAAGATAAATGATCAATATGTGTTCAAAACGAAAATCAGTATTTTCGCTA
CCCTCTGATAGCGAAAAAAAGAAAGCAAAGTACAATGATGACTTGCAGCT
TGCGAAAGATTCAATCCCCTCCACCCACAGCCCGCAAAGCAAAGAGAATA
ATTTCGTCCTTCTGAGAACATTGCTTCAGGATATTATACAGAGCCACGGC
GATACTCAAAGCCACGGATCCCAGACCGACACCGATATCTTTACTGCAGC
TACTGAGCTCGACGCTGCATTACAGCGTGCAGCAGGTACCATAAAATCTA
CTACCAAACCCTATGAGGGTGCAACACTAGCGCTAGAGACATCGGAAGCC
AATGTGGAGTGTTCTTTGCCCCCTTTACCTCCAATATTGGATGACATGCT
TGAGAGGGCAGTTTTCACACACCCGGGTGTCAGCAACAACTCCGGAGCTA
CTTACGATCGGCTCGAGGTTCTTGGAGATGCATATATTGAACTTATCTCC
ACGAAGCTCATCTGGGACAGATTCCAGGATATTCCTTCGGGTCAAATATC
TCAAATACGCGAGAGACTTGTAAAGAATGAGACACTGTCTGATTATGCGT
CTAAGTACGGACTCGACAGCAGGGCTTCCGTACCTCCGGACTATCGGAAG
CAACCCAAAAGATGGCTTAAAACCAAGGCGGACATCTTTGAGGCTTATGT
AGCTGCCGTTGTCCTGTCAGATACCAGCAATGGTTATTGTGTGGCTGAAG
AATGGCTAAGACAATTGTGGTCTCCGAAGCTTGAAAAGCTTGAAAAACCA
AAATCCGCCTTGCATGCCAAAGAAGCACTCGCAAAGAAAATCATGGGCAA
GGGGATTAAGCTCAATTACATCGATGAGCGCCCTCCTGCTCAGCGCGGCA
GGGGGCTACAGACATATTTTATCGGAGTTTATCTCACTGGCTGGGGCTGG
AACCATAAGCACCTTGGCTCTGGTCAAGGTTCTAATAAAGCAATTGCAGG
AAATGAGGCGGCCGAGCAGGCATTGTTAAATGAACCTCTAATCGAAAAGA
TCATGGAAGTTAAGAAAGCACATCTAGCACAAAGATAAATGATCAATATG
TGTTCAAAACGAAAATCAGTATTTTCGCTACCCTCTGATAGCGAAAAAAA
GAAAGCAAAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000756KJC3_000756Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000756-T1KJC3_000756-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000756-T1.cdsKJC3_000756-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000756-T1.utr3p1KJC3_000756-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000756-T1.exon2KJC3_000756-T1.exon2Aspergillus niger KJC3exon
KJC3_000756-T1.exon1KJC3_000756-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000756-T1.utr5p1KJC3_000756-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036389
DBxrefInterPro:IPR000999
DBxrefPFAM:PF14622
DBxrefPFAM:PF00636
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:1769051..1770212 -
Powered by Drupal