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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:1890401..1891262- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000766-T1 ID=KJC3_000766-T1|Name=KJC3_000766-T1|organism=Aspergillus niger KJC3|type=mRNA|length=862bp|location=Sequence derived from alignment at ch1:1890401..1891262- (Aspergillus niger KJC3)
CACCGTCCCAGCCCGGTCACAATGGCGACTGATCACAAATCAATTCTTGT
CCCCCCGAAGCGGGCCAATACGGACTACCCGGTAGGGTCGATGTTCTTTA
TTCGACTTGGACTTACGGATCTTGCGGCTAACTTGAGCTTTTGTAGCTAA
TTGACTCCGACCCGTATGGACTAGCTTGACGTTACCATATTGCAATTGAC
TCACTTTTCAAACCAGGCACCTGAGACGAGTTTTCGGATATGCACGACCC
TCTGACTACGCAGTGGGCGGCGGAATGGCCGCTGCGTCTCCTCTTGCGTT
CTGGATTATGGAAAGAGTGAGCCCATCCCATGTGGGCAGGGGAGGGTTCG
CTCCTGTGATGCGCCTAGCAACAGCCATTGGCCTTATTGGAGGTCTTCAC
GTGGTCTATCAGAGATCCTGCAGTCAGTGCAACCATGGTTTTGGTCTACA
TCTTTTTTAACACTAACGCTCTTGTACAGACCGCTTCTATGGCTTCACAG
AGAATTCGAGGGAAGCTGATATGGATATGAAGGAGATGGTGGACAAAGTC
AAGAAAGGGGAGTCCCTATATGGCACATCCAAAGTCTCCTCATACCTGCA
AGGAGTTGCTGCTCGAAACTCTAGATACTCTGAGCTATTTATCCATGTTC
TTCCATGGTTCAACCTAGTCAACCATGACCAGGTAAGTGCAATGGAGGAG
CGACCGCCTTTCATACGTAATCATCAGCGCTGAATACCAAATTGGTTACT
AACTGCAATACAAGCATGGCGTCGACACGGCCAAATACTATCAGCAAGCC
GAGCGGGAGCTGGAAGCCGAGCGGTTGAAGCAAGCGAGCTCCTGAATTTT
CTGATATCAGTG back to topCoding sequence (CDS) from alignment at ch1:1890401..1891262- >KJC3_000766-T1 ID=KJC3_000766-T1|Name=KJC3_000766-T1|organism=Aspergillus niger KJC3|type=CDS|length=2835bp|location=Sequence derived from alignment at ch1:1890401..1891262- (Aspergillus niger KJC3)
CATGGCGTCGACACGGCCAAATACTATCAGCAAGCCGAGCGGGAGCTGGA
AGCCGAGCGGTTGAAGCAAGCGAGCTCCTGAACCGCTTCTATGGCTTCAC
AGAGAATTCGAGGGAAGCTGATATGGATATGAAGGAGATGGTGGACAAAG
TCAAGAAAGGGGAGTCCCTATATGGCACATCCAAAGTCTCCTCATACCTG
CAAGGAGTTGCTGCTCGAAACTCTAGATACTCTGAGCTATTTATCCATGT
TCTTCCATGGTTCAACCTAGTCAACCATGACCAGGCACCTGAGACGAGTT
TTCGGATATGCACGACCCTCTGACTACGCAGTGGGCGGCGGAATGGCCGC
TGCGTCTCCTCTTGCGTTCTGGATTATGGAAAGAGTGAGCCCATCCCATG
TGGGCAGGGGAGGGTTCGCTCCTGTGATGCGCCTAGCAACAGCCATTGGC
CTTATTGGAGGTCTTCACGTGGTCTATCAGAGATCCTGCACTAATTGACT
CCGACCCATGGCGACTGATCACAAATCAATTCTTGTCCCCCCGAAGCGGG
CCAATACGGACTACCCGCATGGCGTCGACACGGCCAAATACTATCAGCAA
GCCGAGCGGGAGCTGGAAGCCGAGCGGTTGAAGCAAGCGAGCTCCTGAAC
CGCTTCTATGGCTTCACAGAGAATTCGAGGGAAGCTGATATGGATATGAA
GGAGATGGTGGACAAAGTCAAGAAAGGGGAGTCCCTATATGGCACATCCA
AAGTCTCCTCATACCTGCAAGGAGTTGCTGCTCGAAACTCTAGATACTCT
GAGCTATTTATCCATGTTCTTCCATGGTTCAACCTAGTCAACCATGACCA
GGCACCTGAGACGAGTTTTCGGATATGCACGACCCTCTGACTACGCAGTG
GGCGGCGGAATGGCCGCTGCGTCTCCTCTTGCGTTCTGGATTATGGAAAG
AGTGAGCCCATCCCATGTGGGCAGGGGAGGGTTCGCTCCTGTGATGCGCC
TAGCAACAGCCATTGGCCTTATTGGAGGTCTTCACGTGGTCTATCAGAGA
TCCTGCACTAATTGACTCCGACCCATGGCGACTGATCACAAATCAATTCT
TGTCCCCCCGAAGCGGGCCAATACGGACTACCCGCATGGCGTCGACACGG
CCAAATACTATCAGCAAGCCGAGCGGGAGCTGGAAGCCGAGCGGTTGAAG
CAAGCGAGCTCCTGAACCGCTTCTATGGCTTCACAGAGAATTCGAGGGAA
GCTGATATGGATATGAAGGAGATGGTGGACAAAGTCAAGAAAGGGGAGTC
CCTATATGGCACATCCAAAGTCTCCTCATACCTGCAAGGAGTTGCTGCTC
GAAACTCTAGATACTCTGAGCTATTTATCCATGTTCTTCCATGGTTCAAC
CTAGTCAACCATGACCAGGCACCTGAGACGAGTTTTCGGATATGCACGAC
CCTCTGACTACGCAGTGGGCGGCGGAATGGCCGCTGCGTCTCCTCTTGCG
TTCTGGATTATGGAAAGAGTGAGCCCATCCCATGTGGGCAGGGGAGGGTT
CGCTCCTGTGATGCGCCTAGCAACAGCCATTGGCCTTATTGGAGGTCTTC
ACGTGGTCTATCAGAGATCCTGCACTAATTGACTCCGACCCATGGCGACT
GATCACAAATCAATTCTTGTCCCCCCGAAGCGGGCCAATACGGACTACCC
GCATGGCGTCGACACGGCCAAATACTATCAGCAAGCCGAGCGGGAGCTGG
AAGCCGAGCGGTTGAAGCAAGCGAGCTCCTGAACCGCTTCTATGGCTTCA
CAGAGAATTCGAGGGAAGCTGATATGGATATGAAGGAGATGGTGGACAAA
GTCAAGAAAGGGGAGTCCCTATATGGCACATCCAAAGTCTCCTCATACCT
GCAAGGAGTTGCTGCTCGAAACTCTAGATACTCTGAGCTATTTATCCATG
TTCTTCCATGGTTCAACCTAGTCAACCATGACCAGGCACCTGAGACGAGT
TTTCGGATATGCACGACCCTCTGACTACGCAGTGGGCGGCGGAATGGCCG
CTGCGTCTCCTCTTGCGTTCTGGATTATGGAAAGAGTGAGCCCATCCCAT
GTGGGCAGGGGAGGGTTCGCTCCTGTGATGCGCCTAGCAACAGCCATTGG
CCTTATTGGAGGTCTTCACGTGGTCTATCAGAGATCCTGCACTAATTGAC
TCCGACCCATGGCGACTGATCACAAATCAATTCTTGTCCCCCCGAAGCGG
GCCAATACGGACTACCCGCATGGCGTCGACACGGCCAAATACTATCAGCA
AGCCGAGCGGGAGCTGGAAGCCGAGCGGTTGAAGCAAGCGAGCTCCTGAA
CCGCTTCTATGGCTTCACAGAGAATTCGAGGGAAGCTGATATGGATATGA
AGGAGATGGTGGACAAAGTCAAGAAAGGGGAGTCCCTATATGGCACATCC
AAAGTCTCCTCATACCTGCAAGGAGTTGCTGCTCGAAACTCTAGATACTC
TGAGCTATTTATCCATGTTCTTCCATGGTTCAACCTAGTCAACCATGACC
AGGCACCTGAGACGAGTTTTCGGATATGCACGACCCTCTGACTACGCAGT
GGGCGGCGGAATGGCCGCTGCGTCTCCTCTTGCGTTCTGGATTATGGAAA
GAGTGAGCCCATCCCATGTGGGCAGGGGAGGGTTCGCTCCTGTGATGCGC
CTAGCAACAGCCATTGGCCTTATTGGAGGTCTTCACGTGGTCTATCAGAG
ATCCTGCACTAATTGACTCCGACCCATGGCGACTGATCACAAATCAATTC
TTGTCCCCCCGAAGCGGGCCAATACGGACTACCCG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000766-T1.utr3p1 | KJC3_000766-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000766-T1.utr5p1 | KJC3_000766-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR024549 |
| DBxref | InterPro:IPR019721 |
| DBxref | PFAM:PF12853 |
| DBxref | PFAM:PF10785 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:1890401..1891262 - |
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