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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:1955016..1956963- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000791-T1 ID=KJC3_000791-T1|Name=KJC3_000791-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1948bp|location=Sequence derived from alignment at ch1:1955016..1956963- (Aspergillus niger KJC3)
TCCAAACCATCCTAAATACTACTATCCACCTATCGACCTTTCTTTCTTTC
CCCCCTCGTAGCTGAGAATTTGAGACCTCGTCTTATAATAGCGTCGACTG
GCTGTCAGCCATGGCCGCCGATGCCGCTCCTATACAGCAAATCATCACCC
TCTTCACCCATCTGAATACGAACTCAGCTCGACACGATGCGTATGACCAT
CCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCGATGATCTT
CCTTTTCCCCTCCTTCCTTCTCCCCCCCCTCCCAGATAAAACCCCGATGC
TAGCTTTTAGCTCATGCAGTCCCCCGACAGGTATCATCGCATTTTAGACC
TACTGAACCCCCATGAATGGCGCGATGTACAAAAGCGCATCAACCAGCGC
TCCTTTCAAAAAGATATTCTAGCGGAATTGCCTCCAGAAATCGCAGTCCA
AATCGCTCAGTATCTTGACCTTTCTGACCTCTTTATCCTTCAAAGGGTAT
GTTCCCATCCTTCGTGGTCTTGGGGAAAAAAAATGACCTGCCACCCTTAT
AACCCGTGAGACTGAGTTCAAGCCACATTCCACCAGGTCTCTAGAAAGTG
GCTCCAGCTACTGTCCTCGGAACTGATCCAGGGTGCTGTATACCAACAAT
ACACAGGGCATGTGGGCGCAGCAGCACATGTCCTAACTAATCACTTCACC
CAGTATGCCAAGTATAGAATCCGTCTGGAGCGTGGCCTACCCATTTGCAA
TCTCCAGGCCCCCAACCTCTTCCCAACAGATGGCTCGAAGCTTGAATGCT
TGGATTACGCCAGTGGAAGGTGTGCTTGGCTAGATAACGGCACCCATGTC
GTCGTGCACGATCTCTGCAAGCGCTCCACCCAGCGTTTTTGCACGGAGAA
TCGAGATTCGTTCTGGGATTTGCGTCTCTCCGATTCCATGGTGGTTGCGA
TCAGCGCGCGTGCGTAAGTACACATAATACTCACACCACCACAACTTGTC
ACGGCTGCGTCGAGAAAGGAACATATTAGACACCCAGCTCATCCCGAGTC
TAGATACTGCCACGCCTGGAACCTTGAAACGGAAGAACACGCCTCGTTTC
GCATCCCCGCTTTCAGCTTTCGGGCCTTCGTTGTTACTGGTCTCAAGGTT
GCTCTGAGTTTCATCAACCATTCTGCAGCTGGTGACGAGGAGTCCAAGAT
CTATTACTGGGACATGAGCTCGCGAACTGCTCGTACCATCCAAATAGCAC
CCCATCTGGCATTGATAGGCCTGCAACCCACCACCAACAGTGTGACCACT
CTCCTCCTCGAAAGAGGAGATGATCCCACGAACCCCCACCATTCGCCCTG
GGACAGACTACGTGTCGTAAAACACACCTTCGATGATCACGGACGCACCA
CCAGTCCACTACCCTCCTATACATTACATTTACCGTTCCCTATTCAGCCT
GGCTGGACTATTGCCGACATATCAGACAGCTCTACAAACAACTTAGCCGT
CTTTAACTGCACCCCGCCGCCTCAACCCAGTGCGCTGTCGGCGACGACGA
CAACGACCACCCTTCACTATGTTCTTGTAGTCTCCTATGACCCGCAGCGG
GACCAGATTCACGTGCACACACTGCCCCAGGAAGAAGGCACACCTTATTT
TCCCTTTTGCAAGACCGCGCTGGATAGTGATCTTCTCTACTACGTAAAGA
GTGATAGGGGGAAACCGGCCATTTGGATCTCCAGTCCAGCCTCCCGCATC
CCTCATCGCCCGGCTGAATCCATGAGTCTCGGGTTGCCTCGAGAAGCCTC
GAATGCCATCTATACGTATGCGAACATGTTCACTCTCTACGGCGATCGCG
ACTTTGTTCTCCTGGTCCACGAGACCGATGTGAAAGTGTGGCGGTTTAAA
GACACACAACCTCCAGAGTCTGTCAATCTGGCGCTTCTAGCAGCATGA back to topCoding sequence (CDS) from alignment at ch1:1955016..1956963- >KJC3_000791-T1 ID=KJC3_000791-T1|Name=KJC3_000791-T1|organism=Aspergillus niger KJC3|type=CDS|length=6072bp|location=Sequence derived from alignment at ch1:1955016..1956963- (Aspergillus niger KJC3)
ATACTGCCACGCCTGGAACCTTGAAACGGAAGAACACGCCTCGTTTCGCA
TCCCCGCTTTCAGCTTTCGGGCCTTCGTTGTTACTGGTCTCAAGGTTGCT
CTGAGTTTCATCAACCATTCTGCAGCTGGTGACGAGGAGTCCAAGATCTA
TTACTGGGACATGAGCTCGCGAACTGCTCGTACCATCCAAATAGCACCCC
ATCTGGCATTGATAGGCCTGCAACCCACCACCAACAGTGTGACCACTCTC
CTCCTCGAAAGAGGAGATGATCCCACGAACCCCCACCATTCGCCCTGGGA
CAGACTACGTGTCGTAAAACACACCTTCGATGATCACGGACGCACCACCA
GTCCACTACCCTCCTATACATTACATTTACCGTTCCCTATTCAGCCTGGC
TGGACTATTGCCGACATATCAGACAGCTCTACAAACAACTTAGCCGTCTT
TAACTGCACCCCGCCGCCTCAACCCAGTGCGCTGTCGGCGACGACGACAA
CGACCACCCTTCACTATGTTCTTGTAGTCTCCTATGACCCGCAGCGGGAC
CAGATTCACGTGCACACACTGCCCCAGGAAGAAGGCACACCTTATTTTCC
CTTTTGCAAGACCGCGCTGGATAGTGATCTTCTCTACTACGTAAAGAGTG
ATAGGGGGAAACCGGCCATTTGGATCTCCAGTCCAGCCTCCCGCATCCCT
CATCGCCCGGCTGAATCCATGAGTCTCGGGTTGCCTCGAGAAGCCTCGAA
TGCCATCTATACGTATGCGAACATGTTCACTCTCTACGGCGATCGCGACT
TTGTTCTCCTGGTCCACGAGACCGATGTGAAAGTGTGGCGGTTTAAAGAC
ACACAACCTCCAGAGTCTGTCAATCTGGCGCTTCTAGCAGCATGAGTCTC
TAGAAAGTGGCTCCAGCTACTGTCCTCGGAACTGATCCAGGGTGCTGTAT
ACCAACAATACACAGGGCATGTGGGCGCAGCAGCACATGTCCTAACTAAT
CACTTCACCCAGTATGCCAAGTATAGAATCCGTCTGGAGCGTGGCCTACC
CATTTGCAATCTCCAGGCCCCCAACCTCTTCCCAACAGATGGCTCGAAGC
TTGAATGCTTGGATTACGCCAGTGGAAGGTGTGCTTGGCTAGATAACGGC
ACCCATGTCGTCGTGCACGATCTCTGCAAGCGCTCCACCCAGCGTTTTTG
CACGGAGAATCGAGATTCGTTCTGGGATTTGCGTCTCTCCGATTCCATGG
TGGTTGCGATCAGCGCGCGTGCGTATCATCGCATTTTAGACCTACTGAAC
CCCCATGAATGGCGCGATGTACAAAAGCGCATCAACCAGCGCTCCTTTCA
AAAAGATATTCTAGCGGAATTGCCTCCAGAAATCGCAGTCCAAATCGCTC
AGTATCTTGACCTTTCTGACCTCTTTATCCTTCAAAGGATGGCCGCCGAT
GCCGCTCCTATACAGCAAATCATCACCCTCTTCACCCATCTGAATACGAA
CTCAGCTCGACACGATGCATACTGCCACGCCTGGAACCTTGAAACGGAAG
AACACGCCTCGTTTCGCATCCCCGCTTTCAGCTTTCGGGCCTTCGTTGTT
ACTGGTCTCAAGGTTGCTCTGAGTTTCATCAACCATTCTGCAGCTGGTGA
CGAGGAGTCCAAGATCTATTACTGGGACATGAGCTCGCGAACTGCTCGTA
CCATCCAAATAGCACCCCATCTGGCATTGATAGGCCTGCAACCCACCACC
AACAGTGTGACCACTCTCCTCCTCGAAAGAGGAGATGATCCCACGAACCC
CCACCATTCGCCCTGGGACAGACTACGTGTCGTAAAACACACCTTCGATG
ATCACGGACGCACCACCAGTCCACTACCCTCCTATACATTACATTTACCG
TTCCCTATTCAGCCTGGCTGGACTATTGCCGACATATCAGACAGCTCTAC
AAACAACTTAGCCGTCTTTAACTGCACCCCGCCGCCTCAACCCAGTGCGC
TGTCGGCGACGACGACAACGACCACCCTTCACTATGTTCTTGTAGTCTCC
TATGACCCGCAGCGGGACCAGATTCACGTGCACACACTGCCCCAGGAAGA
AGGCACACCTTATTTTCCCTTTTGCAAGACCGCGCTGGATAGTGATCTTC
TCTACTACGTAAAGAGTGATAGGGGGAAACCGGCCATTTGGATCTCCAGT
CCAGCCTCCCGCATCCCTCATCGCCCGGCTGAATCCATGAGTCTCGGGTT
GCCTCGAGAAGCCTCGAATGCCATCTATACGTATGCGAACATGTTCACTC
TCTACGGCGATCGCGACTTTGTTCTCCTGGTCCACGAGACCGATGTGAAA
GTGTGGCGGTTTAAAGACACACAACCTCCAGAGTCTGTCAATCTGGCGCT
TCTAGCAGCATGAGTCTCTAGAAAGTGGCTCCAGCTACTGTCCTCGGAAC
TGATCCAGGGTGCTGTATACCAACAATACACAGGGCATGTGGGCGCAGCA
GCACATGTCCTAACTAATCACTTCACCCAGTATGCCAAGTATAGAATCCG
TCTGGAGCGTGGCCTACCCATTTGCAATCTCCAGGCCCCCAACCTCTTCC
CAACAGATGGCTCGAAGCTTGAATGCTTGGATTACGCCAGTGGAAGGTGT
GCTTGGCTAGATAACGGCACCCATGTCGTCGTGCACGATCTCTGCAAGCG
CTCCACCCAGCGTTTTTGCACGGAGAATCGAGATTCGTTCTGGGATTTGC
GTCTCTCCGATTCCATGGTGGTTGCGATCAGCGCGCGTGCGTATCATCGC
ATTTTAGACCTACTGAACCCCCATGAATGGCGCGATGTACAAAAGCGCAT
CAACCAGCGCTCCTTTCAAAAAGATATTCTAGCGGAATTGCCTCCAGAAA
TCGCAGTCCAAATCGCTCAGTATCTTGACCTTTCTGACCTCTTTATCCTT
CAAAGGATGGCCGCCGATGCCGCTCCTATACAGCAAATCATCACCCTCTT
CACCCATCTGAATACGAACTCAGCTCGACACGATGCATACTGCCACGCCT
GGAACCTTGAAACGGAAGAACACGCCTCGTTTCGCATCCCCGCTTTCAGC
TTTCGGGCCTTCGTTGTTACTGGTCTCAAGGTTGCTCTGAGTTTCATCAA
CCATTCTGCAGCTGGTGACGAGGAGTCCAAGATCTATTACTGGGACATGA
GCTCGCGAACTGCTCGTACCATCCAAATAGCACCCCATCTGGCATTGATA
GGCCTGCAACCCACCACCAACAGTGTGACCACTCTCCTCCTCGAAAGAGG
AGATGATCCCACGAACCCCCACCATTCGCCCTGGGACAGACTACGTGTCG
TAAAACACACCTTCGATGATCACGGACGCACCACCAGTCCACTACCCTCC
TATACATTACATTTACCGTTCCCTATTCAGCCTGGCTGGACTATTGCCGA
CATATCAGACAGCTCTACAAACAACTTAGCCGTCTTTAACTGCACCCCGC
CGCCTCAACCCAGTGCGCTGTCGGCGACGACGACAACGACCACCCTTCAC
TATGTTCTTGTAGTCTCCTATGACCCGCAGCGGGACCAGATTCACGTGCA
CACACTGCCCCAGGAAGAAGGCACACCTTATTTTCCCTTTTGCAAGACCG
CGCTGGATAGTGATCTTCTCTACTACGTAAAGAGTGATAGGGGGAAACCG
GCCATTTGGATCTCCAGTCCAGCCTCCCGCATCCCTCATCGCCCGGCTGA
ATCCATGAGTCTCGGGTTGCCTCGAGAAGCCTCGAATGCCATCTATACGT
ATGCGAACATGTTCACTCTCTACGGCGATCGCGACTTTGTTCTCCTGGTC
CACGAGACCGATGTGAAAGTGTGGCGGTTTAAAGACACACAACCTCCAGA
GTCTGTCAATCTGGCGCTTCTAGCAGCATGAGTCTCTAGAAAGTGGCTCC
AGCTACTGTCCTCGGAACTGATCCAGGGTGCTGTATACCAACAATACACA
GGGCATGTGGGCGCAGCAGCACATGTCCTAACTAATCACTTCACCCAGTA
TGCCAAGTATAGAATCCGTCTGGAGCGTGGCCTACCCATTTGCAATCTCC
AGGCCCCCAACCTCTTCCCAACAGATGGCTCGAAGCTTGAATGCTTGGAT
TACGCCAGTGGAAGGTGTGCTTGGCTAGATAACGGCACCCATGTCGTCGT
GCACGATCTCTGCAAGCGCTCCACCCAGCGTTTTTGCACGGAGAATCGAG
ATTCGTTCTGGGATTTGCGTCTCTCCGATTCCATGGTGGTTGCGATCAGC
GCGCGTGCGTATCATCGCATTTTAGACCTACTGAACCCCCATGAATGGCG
CGATGTACAAAAGCGCATCAACCAGCGCTCCTTTCAAAAAGATATTCTAG
CGGAATTGCCTCCAGAAATCGCAGTCCAAATCGCTCAGTATCTTGACCTT
TCTGACCTCTTTATCCTTCAAAGGATGGCCGCCGATGCCGCTCCTATACA
GCAAATCATCACCCTCTTCACCCATCTGAATACGAACTCAGCTCGACACG
ATGCATACTGCCACGCCTGGAACCTTGAAACGGAAGAACACGCCTCGTTT
CGCATCCCCGCTTTCAGCTTTCGGGCCTTCGTTGTTACTGGTCTCAAGGT
TGCTCTGAGTTTCATCAACCATTCTGCAGCTGGTGACGAGGAGTCCAAGA
TCTATTACTGGGACATGAGCTCGCGAACTGCTCGTACCATCCAAATAGCA
CCCCATCTGGCATTGATAGGCCTGCAACCCACCACCAACAGTGTGACCAC
TCTCCTCCTCGAAAGAGGAGATGATCCCACGAACCCCCACCATTCGCCCT
GGGACAGACTACGTGTCGTAAAACACACCTTCGATGATCACGGACGCACC
ACCAGTCCACTACCCTCCTATACATTACATTTACCGTTCCCTATTCAGCC
TGGCTGGACTATTGCCGACATATCAGACAGCTCTACAAACAACTTAGCCG
TCTTTAACTGCACCCCGCCGCCTCAACCCAGTGCGCTGTCGGCGACGACG
ACAACGACCACCCTTCACTATGTTCTTGTAGTCTCCTATGACCCGCAGCG
GGACCAGATTCACGTGCACACACTGCCCCAGGAAGAAGGCACACCTTATT
TTCCCTTTTGCAAGACCGCGCTGGATAGTGATCTTCTCTACTACGTAAAG
AGTGATAGGGGGAAACCGGCCATTTGGATCTCCAGTCCAGCCTCCCGCAT
CCCTCATCGCCCGGCTGAATCCATGAGTCTCGGGTTGCCTCGAGAAGCCT
CGAATGCCATCTATACGTATGCGAACATGTTCACTCTCTACGGCGATCGC
GACTTTGTTCTCCTGGTCCACGAGACCGATGTGAAAGTGTGGCGGTTTAA
AGACACACAACCTCCAGAGTCTGTCAATCTGGCGCTTCTAGCAGCATGAG
TCTCTAGAAAGTGGCTCCAGCTACTGTCCTCGGAACTGATCCAGGGTGCT
GTATACCAACAATACACAGGGCATGTGGGCGCAGCAGCACATGTCCTAAC
TAATCACTTCACCCAGTATGCCAAGTATAGAATCCGTCTGGAGCGTGGCC
TACCCATTTGCAATCTCCAGGCCCCCAACCTCTTCCCAACAGATGGCTCG
AAGCTTGAATGCTTGGATTACGCCAGTGGAAGGTGTGCTTGGCTAGATAA
CGGCACCCATGTCGTCGTGCACGATCTCTGCAAGCGCTCCACCCAGCGTT
TTTGCACGGAGAATCGAGATTCGTTCTGGGATTTGCGTCTCTCCGATTCC
ATGGTGGTTGCGATCAGCGCGCGTGCGTATCATCGCATTTTAGACCTACT
GAACCCCCATGAATGGCGCGATGTACAAAAGCGCATCAACCAGCGCTCCT
TTCAAAAAGATATTCTAGCGGAATTGCCTCCAGAAATCGCAGTCCAAATC
GCTCAGTATCTTGACCTTTCTGACCTCTTTATCCTTCAAAGGATGGCCGC
CGATGCCGCTCCTATACAGCAAATCATCACCCTCTTCACCCATCTGAATA
CGAACTCAGCTCGACACGATGC back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000791-T1.utr5p1 | KJC3_000791-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036047 |
| DBxref | InterPro:IPR001810 |
| DBxref | PFAM:PF12937 |
| DBxref | PFAM:PF00646 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:1955016..1956963 - |
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