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KJC3_000806-T1, KJC3_000806-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000806-T1
Unique NameKJC3_000806-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:1993977..1995982-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000806-T1 ID=KJC3_000806-T1|Name=KJC3_000806-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2006bp|location=Sequence derived from alignment at ch1:1993977..1995982- (Aspergillus niger KJC3)
CTTCTTTGGCTTCAGCTCCAACGCCCCCATTTCTTTCCCGCCGCATCATG
CTGCAGCGGTGACTCCTGCCGACAAGATGGCTGCCGCACCATCTTCTCGT
CCCTTTGAATACCTCGAAAGCCTTGCTGGCACTGTCTTCTACAAACTTTA
CCAGCAGCCATCAACGGCTCTCGCCATTTTCAGGCGCATGCTGCCTGATC
TGGGTATGTGTCGCATGTGCATTCACCACTCCGGTGCTTCATCAACTAAC
TGCCTGACTAGCAAAATGCTTTGTCATGGCACTTCTCTACCTAAAGGATC
CGCTCCCCGCGGCGGATCTGGAGGCTTGGGTTAAATCGGAGAGCTTGAAG
TAAGTGCGGGTCAAGCACCCTGGGAAGGTTTCCGCAGTGATTGTGGTTAA
CGTGAGCCTCACACAGAGAACGCGACAATGCACTCTCCATCCTAGGAAGA
CTGCATATTTTATCCAACACTGTTACGGCGGATAATGTCCGCGCCTACAA
AGTCACCGATCCCTTCGCCACTTCATTGCGACACGCTCTCACCGGCGCCG
ACCAAACACAATCTTTTGGCGTCCTTTCACAAGTGCCTGTTGGCTCGGAA
GTCTCGATCCCCGAACTTGATGAGTATGCGCGACGACAGTGGGAAGGAGT
GCTGGGATACATGGTCGGTACTGGAGGCATGGGAGGTCCCCAAGTGACCC
TCAGCAAAGGCGTGAAGGAGCTCCTGCAGGCGGGTCATCTGGTCGAGATC
CGAGATCGTCGCGTCGAAATCACCCAGGATGGGTTTGCCTTTGTCCTGCA
AGATGTCAGCACGCAGGTGTGGCATATCTTGATTCTTTACGTCGAGAGCG
CCAGCGCCATCAAGATGGACAGTGTCGAAGTCCTCTCGTTCGTGTTCCTT
CTCAGCAGTCTCGAACTCGGAAAATCATATGAAAAGAACCACCTCAGTTC
GAAACAACTGCGCATGCTGACCGACCTTGCCGACTTTGGTATCGTCTATC
AAGAATCGCCGGATGCACCGCGTTTCTACCCCACCCGTCTTGCAACCACC
CTCACGTCCGACTCCAGCGCCTTGAGCAACCCACTCTTGGGTTCCCTCTC
CGGTCCTGCTGGCGAAGCCTCCAGCAAAGCGGGTACGGGCTTCATCATTA
TCGAAACCAACTACCGTGTATACGCATACACCTCGTCTCCCCTACAGATC
TCCCTGATTGCTCTGTTCACCACACTGAAATACCGCTTCCCCAACCTCAT
CACCGGCAAAATCACCCGCCAATCCGTCCGCCGGGCCGTCGAGATGGGCA
TCACCGCCGACCAAATCATTTCCTATCTCTCTACTCACGCCCACCCGCAA
ATGCGCAAGCACAACGTCTCCCGCTCGACCTCAAACCAGGCCGGGATCCC
CCCGTCAGTCCTCCCGCCAACCGTGGTGGACCAGATTCGACTTTGGCAGC
TGGAGCGGGACCGTGTCAAAGCTACGTCCGGATTCCTTTTCAAGGACTTT
GTCAGTCTGGCAGAATACGAAGCGCCATGTCGCTATGCCGAAGAAATCGG
TGTTCTGGCATGGAAGTCGGATCGCAAACGCATGTTCTTCGTGACGAGGC
ATGAACAAGTGGCTGCGTTCTTAAGGAGCCGGAAATAAGTCGAGGGTTCA
TCGACCCCACCAAAAGGTGTTGGCTGAAATGGATTATTGGGCTAAAAAAA
AGGAATTAATTATTACTGCAACTTTTGGCTTCTTGCGTTGCATAGAGGTG
CGGCAGCTTGGCGTTCTGGTTTCTCGGGACATTTCATGAAACTGATGATA
TATAACCCACCCCAAATCGGAGAATGCGATTGTGGGGTGACGGCTTACAA
ACTGTATAATAGCTGGGAAACTCAAAATAGAAGAAAAGGAAGTGTGACAT
CCAAATGACATAGACAAGGATCATCAATAATGACTATCTGTCCGTCCCTA
GCACAAGCACAGCAAGGTCACCACGCATCATATATACTAATACAATAACA
CAGCCC
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Coding sequence (CDS) from alignment at ch1:1993977..1995982-

>KJC3_000806-T1 ID=KJC3_000806-T1|Name=KJC3_000806-T1|organism=Aspergillus niger KJC3|type=CDS|length=4311bp|location=Sequence derived from alignment at ch1:1993977..1995982- (Aspergillus niger KJC3)
AGAACGCGACAATGCACTCTCCATCCTAGGAAGACTGCATATTTTATCCA
ACACTGTTACGGCGGATAATGTCCGCGCCTACAAAGTCACCGATCCCTTC
GCCACTTCATTGCGACACGCTCTCACCGGCGCCGACCAAACACAATCTTT
TGGCGTCCTTTCACAAGTGCCTGTTGGCTCGGAAGTCTCGATCCCCGAAC
TTGATGAGTATGCGCGACGACAGTGGGAAGGAGTGCTGGGATACATGGTC
GGTACTGGAGGCATGGGAGGTCCCCAAGTGACCCTCAGCAAAGGCGTGAA
GGAGCTCCTGCAGGCGGGTCATCTGGTCGAGATCCGAGATCGTCGCGTCG
AAATCACCCAGGATGGGTTTGCCTTTGTCCTGCAAGATGTCAGCACGCAG
GTGTGGCATATCTTGATTCTTTACGTCGAGAGCGCCAGCGCCATCAAGAT
GGACAGTGTCGAAGTCCTCTCGTTCGTGTTCCTTCTCAGCAGTCTCGAAC
TCGGAAAATCATATGAAAAGAACCACCTCAGTTCGAAACAACTGCGCATG
CTGACCGACCTTGCCGACTTTGGTATCGTCTATCAAGAATCGCCGGATGC
ACCGCGTTTCTACCCCACCCGTCTTGCAACCACCCTCACGTCCGACTCCA
GCGCCTTGAGCAACCCACTCTTGGGTTCCCTCTCCGGTCCTGCTGGCGAA
GCCTCCAGCAAAGCGGGTACGGGCTTCATCATTATCGAAACCAACTACCG
TGTATACGCATACACCTCGTCTCCCCTACAGATCTCCCTGATTGCTCTGT
TCACCACACTGAAATACCGCTTCCCCAACCTCATCACCGGCAAAATCACC
CGCCAATCCGTCCGCCGGGCCGTCGAGATGGGCATCACCGCCGACCAAAT
CATTTCCTATCTCTCTACTCACGCCCACCCGCAAATGCGCAAGCACAACG
TCTCCCGCTCGACCTCAAACCAGGCCGGGATCCCCCCGTCAGTCCTCCCG
CCAACCGTGGTGGACCAGATTCGACTTTGGCAGCTGGAGCGGGACCGTGT
CAAAGCTACGTCCGGATTCCTTTTCAAGGACTTTGTCAGTCTGGCAGAAT
ACGAAGCGCCATGTCGCTATGCCGAAGAAATCGGTGTTCTGGCATGGAAG
TCGGATCGCAAACGCATGTTCTTCGTGACGAGGCATGAACAAGTGGCTGC
GTTCTTAAGGAGCCGGAAATAACAAAATGCTTTGTCATGGCACTTCTCTA
CCTAAAGGATCCGCTCCCCGCGGCGGATCTGGAGGCTTGGGTTAAATCGG
AGAGCTTGAAATGGCTGCCGCACCATCTTCTCGTCCCTTTGAATACCTCG
AAAGCCTTGCTGGCACTGTCTTCTACAAACTTTACCAGCAGCCATCAACG
GCTCTCGCCATTTTCAGGCGCATGCTGCCTGATCTGGAGAACGCGACAAT
GCACTCTCCATCCTAGGAAGACTGCATATTTTATCCAACACTGTTACGGC
GGATAATGTCCGCGCCTACAAAGTCACCGATCCCTTCGCCACTTCATTGC
GACACGCTCTCACCGGCGCCGACCAAACACAATCTTTTGGCGTCCTTTCA
CAAGTGCCTGTTGGCTCGGAAGTCTCGATCCCCGAACTTGATGAGTATGC
GCGACGACAGTGGGAAGGAGTGCTGGGATACATGGTCGGTACTGGAGGCA
TGGGAGGTCCCCAAGTGACCCTCAGCAAAGGCGTGAAGGAGCTCCTGCAG
GCGGGTCATCTGGTCGAGATCCGAGATCGTCGCGTCGAAATCACCCAGGA
TGGGTTTGCCTTTGTCCTGCAAGATGTCAGCACGCAGGTGTGGCATATCT
TGATTCTTTACGTCGAGAGCGCCAGCGCCATCAAGATGGACAGTGTCGAA
GTCCTCTCGTTCGTGTTCCTTCTCAGCAGTCTCGAACTCGGAAAATCATA
TGAAAAGAACCACCTCAGTTCGAAACAACTGCGCATGCTGACCGACCTTG
CCGACTTTGGTATCGTCTATCAAGAATCGCCGGATGCACCGCGTTTCTAC
CCCACCCGTCTTGCAACCACCCTCACGTCCGACTCCAGCGCCTTGAGCAA
CCCACTCTTGGGTTCCCTCTCCGGTCCTGCTGGCGAAGCCTCCAGCAAAG
CGGGTACGGGCTTCATCATTATCGAAACCAACTACCGTGTATACGCATAC
ACCTCGTCTCCCCTACAGATCTCCCTGATTGCTCTGTTCACCACACTGAA
ATACCGCTTCCCCAACCTCATCACCGGCAAAATCACCCGCCAATCCGTCC
GCCGGGCCGTCGAGATGGGCATCACCGCCGACCAAATCATTTCCTATCTC
TCTACTCACGCCCACCCGCAAATGCGCAAGCACAACGTCTCCCGCTCGAC
CTCAAACCAGGCCGGGATCCCCCCGTCAGTCCTCCCGCCAACCGTGGTGG
ACCAGATTCGACTTTGGCAGCTGGAGCGGGACCGTGTCAAAGCTACGTCC
GGATTCCTTTTCAAGGACTTTGTCAGTCTGGCAGAATACGAAGCGCCATG
TCGCTATGCCGAAGAAATCGGTGTTCTGGCATGGAAGTCGGATCGCAAAC
GCATGTTCTTCGTGACGAGGCATGAACAAGTGGCTGCGTTCTTAAGGAGC
CGGAAATAACAAAATGCTTTGTCATGGCACTTCTCTACCTAAAGGATCCG
CTCCCCGCGGCGGATCTGGAGGCTTGGGTTAAATCGGAGAGCTTGAAATG
GCTGCCGCACCATCTTCTCGTCCCTTTGAATACCTCGAAAGCCTTGCTGG
CACTGTCTTCTACAAACTTTACCAGCAGCCATCAACGGCTCTCGCCATTT
TCAGGCGCATGCTGCCTGATCTGGAGAACGCGACAATGCACTCTCCATCC
TAGGAAGACTGCATATTTTATCCAACACTGTTACGGCGGATAATGTCCGC
GCCTACAAAGTCACCGATCCCTTCGCCACTTCATTGCGACACGCTCTCAC
CGGCGCCGACCAAACACAATCTTTTGGCGTCCTTTCACAAGTGCCTGTTG
GCTCGGAAGTCTCGATCCCCGAACTTGATGAGTATGCGCGACGACAGTGG
GAAGGAGTGCTGGGATACATGGTCGGTACTGGAGGCATGGGAGGTCCCCA
AGTGACCCTCAGCAAAGGCGTGAAGGAGCTCCTGCAGGCGGGTCATCTGG
TCGAGATCCGAGATCGTCGCGTCGAAATCACCCAGGATGGGTTTGCCTTT
GTCCTGCAAGATGTCAGCACGCAGGTGTGGCATATCTTGATTCTTTACGT
CGAGAGCGCCAGCGCCATCAAGATGGACAGTGTCGAAGTCCTCTCGTTCG
TGTTCCTTCTCAGCAGTCTCGAACTCGGAAAATCATATGAAAAGAACCAC
CTCAGTTCGAAACAACTGCGCATGCTGACCGACCTTGCCGACTTTGGTAT
CGTCTATCAAGAATCGCCGGATGCACCGCGTTTCTACCCCACCCGTCTTG
CAACCACCCTCACGTCCGACTCCAGCGCCTTGAGCAACCCACTCTTGGGT
TCCCTCTCCGGTCCTGCTGGCGAAGCCTCCAGCAAAGCGGGTACGGGCTT
CATCATTATCGAAACCAACTACCGTGTATACGCATACACCTCGTCTCCCC
TACAGATCTCCCTGATTGCTCTGTTCACCACACTGAAATACCGCTTCCCC
AACCTCATCACCGGCAAAATCACCCGCCAATCCGTCCGCCGGGCCGTCGA
GATGGGCATCACCGCCGACCAAATCATTTCCTATCTCTCTACTCACGCCC
ACCCGCAAATGCGCAAGCACAACGTCTCCCGCTCGACCTCAAACCAGGCC
GGGATCCCCCCGTCAGTCCTCCCGCCAACCGTGGTGGACCAGATTCGACT
TTGGCAGCTGGAGCGGGACCGTGTCAAAGCTACGTCCGGATTCCTTTTCA
AGGACTTTGTCAGTCTGGCAGAATACGAAGCGCCATGTCGCTATGCCGAA
GAAATCGGTGTTCTGGCATGGAAGTCGGATCGCAAACGCATGTTCTTCGT
GACGAGGCATGAACAAGTGGCTGCGTTCTTAAGGAGCCGGAAATAACAAA
ATGCTTTGTCATGGCACTTCTCTACCTAAAGGATCCGCTCCCCGCGGCGG
ATCTGGAGGCTTGGGTTAAATCGGAGAGCTTGAAATGGCTGCCGCACCAT
CTTCTCGTCCCTTTGAATACCTCGAAAGCCTTGCTGGCACTGTCTTCTAC
AAACTTTACCAGCAGCCATCAACGGCTCTCGCCATTTTCAGGCGCATGCT
GCCTGATCTGG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Molecular Function
TermDefinition
GO:0001671ATPase activator activity
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_000806KJC3_000806Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000806-T1KJC3_000806-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000806-T1.cdsKJC3_000806-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000806-T1.utr3p1KJC3_000806-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000806-T1.exon3KJC3_000806-T1.exon3Aspergillus niger KJC3exon
KJC3_000806-T1.exon2KJC3_000806-T1.exon2Aspergillus niger KJC3exon
KJC3_000806-T1.exon1KJC3_000806-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000806-T1.utr5p1KJC3_000806-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09261QR8
DBxrefInterPro:IPR040662
DBxrefInterPro:IPR004598
DBxrefPFAM:PF18307
DBxrefPFAM:PF03849
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:1993977..1995982 -
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