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KJC3_000861-T1, KJC3_000861-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000861-T1
Unique NameKJC3_000861-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:2151872..2153708-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000861-T1 ID=KJC3_000861-T1|Name=KJC3_000861-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1837bp|location=Sequence derived from alignment at ch1:2151872..2153708- (Aspergillus niger KJC3)
TTTCTCGATTCGCAGCTGCTTTTTTCTTTCTCTTGATCTTCTTCCAGTAC
GACAGCCTTCGCCAATCGCCCAACTCGCGAACTCTACGGACCGTCACAAT
GGCCTCCACTGCTACGTGAGACTCCCTTTGAGATTCCCCTGCGGCTGATC
GCTCGAGGTGCCTGTGAGGTTACAGATATAGTCGTCCTTTCTCGCTGGAG
ATGCTGCGACCAGAAACGGTTGCTGAGCACCAGCTCGATTTTTCCCGCGA
CCGCGCTTCGCCCCTGAATCGCCTAAGACTTTGTTAGGAATATGAGGATT
GGGTGCGGCACGGTCTGGGGTATTGAGGTTGAAGGCACTGTGAACCTTCT
CCTTGAAAACAATTGTTGTGAGCTATCGTCGTGTACCATTGCGCCATGAT
AGGGCATGGTACGGGCGAAAAGCGTCAACACCACTTCCCGAGCGTTATGC
TTGGGGTTTTGTCGGATGAGAATTATCATACTTGGTCGTAGTCGCCGCGG
GCTTGCGAACGTTGCTGCTGAGAATGCGTGACTAGTAGTGAGCTGGATCG
CGCAGGCTCGACAAGTGAAGAAGAAAATTTTTTCTTCTACCTCACCGATC
AAATGCATGTCGTCGAGTGCTTTTTTATCCATTGCCTTCAGTATGAGAAT
GTGGCACTATAGCTGCAATTCTTACACTCGGCGAAAGTCTGTGTAATCAT
TACGGACAGACTGTACTGACCTTAACAGCACTGTCCCCACCAAGGAGCAG
GTTCTCGTCCCCGAGACCCTCCTGAAGAAGCGCAAGAGCCAGGAGCAGGC
TCGCGCTGTCGCCCGTGAGGAGGCCGAGAAGAAGAAGGCCGTAAGTTATA
CCTTTTTTTTCATATATCCTCTTCCCTCTTCCTTCTATAGTGATGACAAC
AACCACCACGCGACTAGACTACGGTCGATGCTGTCGCTTCGTTAACCATC
TTTCGGGGCTGAAAATGAAGCTTCAAATGATTTTATTTCACGAGTCATTT
GCAAAGACCATCTGCTAACAGATGAATCCAGGCCAACAAGGAGAAGCGCG
CCGTTATCTTCAAGCGTGCCGAGTCCTACGTCAAGGAGTACCGCGATGCT
GAGCGCGAGAAGATCCGCCTTGCCCGCGTTGCTCGCAAGGAGGGTAACTT
CTACGTTGCTGACGAGCCCAAGCTTGTCTTCGTTATCCGTATCAAGGGGT
AAGTTAATTTAGCATGCCATATGAATGTCATGATATTAACAACTTGATAG
TATCAACAAGATCCCTCCCCAGCCCCGCAAGATCCTCCAGCTGCTCCGTC
TGCTCCAGATCAACAACGGTACCTTCGTCCGTCTTACCAAGGCTACCCAG
GAGATGTTGACCATCATCAACCCCTACATTGCCTACGGTTACCCCAACCT
CAAGTCCGTCCGTGAGCTCGTCTACAAGCGCGGTTACGGAAAGGTCGACA
AGCAGCGTGTTCCCCTCACCGACAACCAGATCATTGAGGAGAACCTCGGC
AAGTACGGCATTGTCTGCATGGAGGATCTGATCCACGAGATCTACACCGT
TGGCCCCAACTTCAAGCAGGCCAACAACTTCCTGTGGCCCTTCAAGCTCT
CCAACCCCACTGGTGGCTTCCACACCCGCAAGTTCAAGCACTTCATCGAG
GGTGGTGACTACGGTAACCGTGAGGAGAACATCAACGGCCTCATCCGCCA
GATGAACTAAATTCATCATCGGTGATGGCTTGTCCGTACCGGGTTGTTAT
GAGCTCCGAATTTCCTAGTTAGCGGGTACTGGTCTAAAATCTGGGTACAA
AAATTTAAAAGCTTCGTACAACCTGACTATCTATCCC
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Coding sequence (CDS) from alignment at ch1:2151872..2153708-

>KJC3_000861-T1 ID=KJC3_000861-T1|Name=KJC3_000861-T1|organism=Aspergillus niger KJC3|type=CDS|length=3024bp|location=Sequence derived from alignment at ch1:2151872..2153708- (Aspergillus niger KJC3)
TATCAACAAGATCCCTCCCCAGCCCCGCAAGATCCTCCAGCTGCTCCGTC
TGCTCCAGATCAACAACGGTACCTTCGTCCGTCTTACCAAGGCTACCCAG
GAGATGTTGACCATCATCAACCCCTACATTGCCTACGGTTACCCCAACCT
CAAGTCCGTCCGTGAGCTCGTCTACAAGCGCGGTTACGGAAAGGTCGACA
AGCAGCGTGTTCCCCTCACCGACAACCAGATCATTGAGGAGAACCTCGGC
AAGTACGGCATTGTCTGCATGGAGGATCTGATCCACGAGATCTACACCGT
TGGCCCCAACTTCAAGCAGGCCAACAACTTCCTGTGGCCCTTCAAGCTCT
CCAACCCCACTGGTGGCTTCCACACCCGCAAGTTCAAGCACTTCATCGAG
GGTGGTGACTACGGTAACCGTGAGGAGAACATCAACGGCCTCATCCGCCA
GATGAACTAAGCCAACAAGGAGAAGCGCGCCGTTATCTTCAAGCGTGCCG
AGTCCTACGTCAAGGAGTACCGCGATGCTGAGCGCGAGAAGATCCGCCTT
GCCCGCGTTGCTCGCAAGGAGGGTAACTTCTACGTTGCTGACGAGCCCAA
GCTTGTCTTCGTTATCCGTATCAAGGGCACTGTCCCCACCAAGGAGCAGG
TTCTCGTCCCCGAGACCCTCCTGAAGAAGCGCAAGAGCCAGGAGCAGGCT
CGCGCTGTCGCCCGTGAGGAGGCCGAGAAGAAGAAGGCCATGGCCTCCAC
TGCTACTATCAACAAGATCCCTCCCCAGCCCCGCAAGATCCTCCAGCTGC
TCCGTCTGCTCCAGATCAACAACGGTACCTTCGTCCGTCTTACCAAGGCT
ACCCAGGAGATGTTGACCATCATCAACCCCTACATTGCCTACGGTTACCC
CAACCTCAAGTCCGTCCGTGAGCTCGTCTACAAGCGCGGTTACGGAAAGG
TCGACAAGCAGCGTGTTCCCCTCACCGACAACCAGATCATTGAGGAGAAC
CTCGGCAAGTACGGCATTGTCTGCATGGAGGATCTGATCCACGAGATCTA
CACCGTTGGCCCCAACTTCAAGCAGGCCAACAACTTCCTGTGGCCCTTCA
AGCTCTCCAACCCCACTGGTGGCTTCCACACCCGCAAGTTCAAGCACTTC
ATCGAGGGTGGTGACTACGGTAACCGTGAGGAGAACATCAACGGCCTCAT
CCGCCAGATGAACTAAGCCAACAAGGAGAAGCGCGCCGTTATCTTCAAGC
GTGCCGAGTCCTACGTCAAGGAGTACCGCGATGCTGAGCGCGAGAAGATC
CGCCTTGCCCGCGTTGCTCGCAAGGAGGGTAACTTCTACGTTGCTGACGA
GCCCAAGCTTGTCTTCGTTATCCGTATCAAGGGCACTGTCCCCACCAAGG
AGCAGGTTCTCGTCCCCGAGACCCTCCTGAAGAAGCGCAAGAGCCAGGAG
CAGGCTCGCGCTGTCGCCCGTGAGGAGGCCGAGAAGAAGAAGGCCATGGC
CTCCACTGCTACTATCAACAAGATCCCTCCCCAGCCCCGCAAGATCCTCC
AGCTGCTCCGTCTGCTCCAGATCAACAACGGTACCTTCGTCCGTCTTACC
AAGGCTACCCAGGAGATGTTGACCATCATCAACCCCTACATTGCCTACGG
TTACCCCAACCTCAAGTCCGTCCGTGAGCTCGTCTACAAGCGCGGTTACG
GAAAGGTCGACAAGCAGCGTGTTCCCCTCACCGACAACCAGATCATTGAG
GAGAACCTCGGCAAGTACGGCATTGTCTGCATGGAGGATCTGATCCACGA
GATCTACACCGTTGGCCCCAACTTCAAGCAGGCCAACAACTTCCTGTGGC
CCTTCAAGCTCTCCAACCCCACTGGTGGCTTCCACACCCGCAAGTTCAAG
CACTTCATCGAGGGTGGTGACTACGGTAACCGTGAGGAGAACATCAACGG
CCTCATCCGCCAGATGAACTAAGCCAACAAGGAGAAGCGCGCCGTTATCT
TCAAGCGTGCCGAGTCCTACGTCAAGGAGTACCGCGATGCTGAGCGCGAG
AAGATCCGCCTTGCCCGCGTTGCTCGCAAGGAGGGTAACTTCTACGTTGC
TGACGAGCCCAAGCTTGTCTTCGTTATCCGTATCAAGGGCACTGTCCCCA
CCAAGGAGCAGGTTCTCGTCCCCGAGACCCTCCTGAAGAAGCGCAAGAGC
CAGGAGCAGGCTCGCGCTGTCGCCCGTGAGGAGGCCGAGAAGAAGAAGGC
CATGGCCTCCACTGCTACTATCAACAAGATCCCTCCCCAGCCCCGCAAGA
TCCTCCAGCTGCTCCGTCTGCTCCAGATCAACAACGGTACCTTCGTCCGT
CTTACCAAGGCTACCCAGGAGATGTTGACCATCATCAACCCCTACATTGC
CTACGGTTACCCCAACCTCAAGTCCGTCCGTGAGCTCGTCTACAAGCGCG
GTTACGGAAAGGTCGACAAGCAGCGTGTTCCCCTCACCGACAACCAGATC
ATTGAGGAGAACCTCGGCAAGTACGGCATTGTCTGCATGGAGGATCTGAT
CCACGAGATCTACACCGTTGGCCCCAACTTCAAGCAGGCCAACAACTTCC
TGTGGCCCTTCAAGCTCTCCAACCCCACTGGTGGCTTCCACACCCGCAAG
TTCAAGCACTTCATCGAGGGTGGTGACTACGGTAACCGTGAGGAGAACAT
CAACGGCCTCATCCGCCAGATGAACTAAGCCAACAAGGAGAAGCGCGCCG
TTATCTTCAAGCGTGCCGAGTCCTACGTCAAGGAGTACCGCGATGCTGAG
CGCGAGAAGATCCGCCTTGCCCGCGTTGCTCGCAAGGAGGGTAACTTCTA
CGTTGCTGACGAGCCCAAGCTTGTCTTCGTTATCCGTATCAAGGGCACTG
TCCCCACCAAGGAGCAGGTTCTCGTCCCCGAGACCCTCCTGAAGAAGCGC
AAGAGCCAGGAGCAGGCTCGCGCTGTCGCCCGTGAGGAGGCCGAGAAGAA
GAAGGCCATGGCCTCCACTGCTAC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0022625cytosolic large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0000463maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL7KJC3_000861Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000861-T1KJC3_000861-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000861-T1.cdsKJC3_000861-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000861-T1.utr3p1KJC3_000861-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000861-T1.exon4KJC3_000861-T1.exon4Aspergillus niger KJC3exon
KJC3_000861-T1.exon3KJC3_000861-T1.exon3Aspergillus niger KJC3exon
KJC3_000861-T1.exon2KJC3_000861-T1.exon2Aspergillus niger KJC3exon
KJC3_000861-T1.exon1KJC3_000861-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000861-T1.utr5p1KJC3_000861-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264P3R
DBxrefInterPro:IPR035808
DBxrefInterPro:IPR018038
DBxrefInterPro:IPR005998
DBxrefInterPro:IPR016082
DBxrefInterPro:IPR023106
DBxrefInterPro:IPR036919
DBxrefInterPro:IPR012988
DBxrefPFAM:PF08079
DBxrefPFAM:PF00327
Product60S ribosomal protein L7
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:2151872..2153708 -
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