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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:2281446..2282958- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000912-T1 ID=KJC3_000912-T1|Name=KJC3_000912-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1513bp|location=Sequence derived from alignment at ch1:2281446..2282958- (Aspergillus niger KJC3)
GTTTCATTTCGGACCCTGTATGTTTGAGGGTCACACACCTCAATGAGATA
ACTACCCTCCTTGCGCAAATACCTGAATGACCACTCGGGTTGTTTCATCT
CATGCATGCGATGCAAGAGCCTGCAGTAATATCACGTGACTAGGAATGCT
TATGTCATGATAGCCACACCTCAGCCACAAATGCGCCACTACGACTATCG
ATAATCCAGTTCTTGCTACCGACAACGCTCAACTTCGCCGCACCATCTCC
GCAGGGCTTCGCGTTTCTGTGTGGAAGCGCAGCTGATCCATATAACGACA
ACATGCCTCCTCCACAGATCAAGCAGGATCTGAACCGGTCCGGATGGGAG
ACCACTGACTTCCCCTCCGTGTGCGAGAACTGCCTGCCCGACAATCCTTA
CGTTCAGATGCTCAAGGAAGACCATGGCGCAGAATGCAAGATTGTAGGCA
ACCCTATCCTCAATCACACAAACATATGACACTAACAGATACCCAGTGCA
CGCGTCCTTTCACCATCTTCCGCTGGAAAGCCGACCGCACCGCGCGCCAG
AAGCGTACTGCCATCTGCTTGACCTGCGCGCGGTTGAAGAACTGCTGTCA
ATGCTGTATGCTGGATCTGTCCTTCGGGCTGCCGATCGTCGTTCGTGATG
CTGCTTTGAAGATGGTCGCTCCAGGTCCCGAAAGCACCATCAACCGCGAA
TACTACGCACAAGGTCACGAGAAGGAGATCGAAGAGGGGCGTGGCGCGGT
GGAGGAATACGAGAAGACGGACGAGAAAGCTCGGGAGCTGCTTCGGAGAC
TCGCCAACAGTGAACCCTACTACAGGAAGCCCCGCCAGATAGAGGCCGCA
CCCCAAGACGAGGAGGGCGCGAGTGCAGGGCCCAGCGACGCACCGGTTGT
ACACAGCCGTTACGGGAATGGTCCGGGGCCCATTCGGACGAGCGAAAGCA
GGAGGGGAACGCCACTTCCGGGTAGAGGACGAGGAGGTATGCGTGGTGGT
CGTGGTGGCCGACCATTCCCTAGCGCCGCTCAGGTTCCCCCATCGGCAGA
AGATATCCTACCGCCCGCGGACCCGAATATCACATCGCTCTTTGTTACTG
GTGTCGAGGACGATCTTCCAGAACACACGCTGCGGACTTTCTTCACACAG
TTTGGACAGTTGCGGTCGCTCATTTGCTCCCACCGTGCTCACTCTGCATT
CGTCAACTTCGCCACTCGGGAAGGTGCTGAGGCGGCTGCCAAGCAGTGCC
AGGGTCGGGCTGTCATCCAGGGCTGCCCTCTGCGCGTTCGCTGGGGTAAG
CCCAAGCCGTTGGATAACATGGATCGGGAGGAACGCTTGAAGAATGCGCG
GGAAGGTCGGCAGGCGGCAGGCCCGCGGGGAGCCGATTCTGGAAAGAAGG
CCATCACAGCTGCCGGAGAGGAGATTGGCAAAGAGCAAAAACAACGGAGT
TATGCTGTCGCCCCACCCCCGGGCGCTGGAGAGGTCCAGTACTCCAGTTT
GTCTGGTGATTGA back to topCoding sequence (CDS) from alignment at ch1:2281446..2282958- >KJC3_000912-T1 ID=KJC3_000912-T1|Name=KJC3_000912-T1|organism=Aspergillus niger KJC3|type=CDS|length=2316bp|location=Sequence derived from alignment at ch1:2281446..2282958- (Aspergillus niger KJC3)
TGCACGCGTCCTTTCACCATCTTCCGCTGGAAAGCCGACCGCACCGCGCG
CCAGAAGCGTACTGCCATCTGCTTGACCTGCGCGCGGTTGAAGAACTGCT
GTCAATGCTGTATGCTGGATCTGTCCTTCGGGCTGCCGATCGTCGTTCGT
GATGCTGCTTTGAAGATGGTCGCTCCAGGTCCCGAAAGCACCATCAACCG
CGAATACTACGCACAAGGTCACGAGAAGGAGATCGAAGAGGGGCGTGGCG
CGGTGGAGGAATACGAGAAGACGGACGAGAAAGCTCGGGAGCTGCTTCGG
AGACTCGCCAACAGTGAACCCTACTACAGGAAGCCCCGCCAGATAGAGGC
CGCACCCCAAGACGAGGAGGGCGCGAGTGCAGGGCCCAGCGACGCACCGG
TTGTACACAGCCGTTACGGGAATGGTCCGGGGCCCATTCGGACGAGCGAA
AGCAGGAGGGGAACGCCACTTCCGGGTAGAGGACGAGGAGGTATGCGTGG
TGGTCGTGGTGGCCGACCATTCCCTAGCGCCGCTCAGGTTCCCCCATCGG
CAGAAGATATCCTACCGCCCGCGGACCCGAATATCACATCGCTCTTTGTT
ACTGGTGTCGAGGACGATCTTCCAGAACACACGCTGCGGACTTTCTTCAC
ACAGTTTGGACAGTTGCGGTCGCTCATTTGCTCCCACCGTGCTCACTCTG
CATTCGTCAACTTCGCCACTCGGGAAGGTGCTGAGGCGGCTGCCAAGCAG
TGCCAGGGTCGGGCTGTCATCCAGGGCTGCCCTCTGCGCGTTCGCTGGGG
TAAGCCCAAGCCGTTGGATAACATGGATCGGGAGGAACGCTTGAAGAATG
CGCGGGAAGGTCGGCAGGCGGCAGGCCCGCGGGGAGCCGATTCTGGAAAG
AAGGCCATCACAGCTGCCGGAGAGGAGATTGGCAAAGAGCAAAAACAACG
GAGTTATGCTGTCGCCCCACCCCCGGGCGCTGGAGAGGTCCAGTACTCCA
GTTTGTCTGGTGATTGAATGCCTCCTCCACAGATCAAGCAGGATCTGAAC
CGGTCCGGATGGGAGACCACTGACTTCCCCTCCGTGTGCGAGAACTGCCT
GCCCGACAATCCTTACGTTCAGATGCTCAAGGAAGACCATGGCGCAGAAT
GCAAGATTTGCACGCGTCCTTTCACCATCTTCCGCTGGAAAGCCGACCGC
ACCGCGCGCCAGAAGCGTACTGCCATCTGCTTGACCTGCGCGCGGTTGAA
GAACTGCTGTCAATGCTGTATGCTGGATCTGTCCTTCGGGCTGCCGATCG
TCGTTCGTGATGCTGCTTTGAAGATGGTCGCTCCAGGTCCCGAAAGCACC
ATCAACCGCGAATACTACGCACAAGGTCACGAGAAGGAGATCGAAGAGGG
GCGTGGCGCGGTGGAGGAATACGAGAAGACGGACGAGAAAGCTCGGGAGC
TGCTTCGGAGACTCGCCAACAGTGAACCCTACTACAGGAAGCCCCGCCAG
ATAGAGGCCGCACCCCAAGACGAGGAGGGCGCGAGTGCAGGGCCCAGCGA
CGCACCGGTTGTACACAGCCGTTACGGGAATGGTCCGGGGCCCATTCGGA
CGAGCGAAAGCAGGAGGGGAACGCCACTTCCGGGTAGAGGACGAGGAGGT
ATGCGTGGTGGTCGTGGTGGCCGACCATTCCCTAGCGCCGCTCAGGTTCC
CCCATCGGCAGAAGATATCCTACCGCCCGCGGACCCGAATATCACATCGC
TCTTTGTTACTGGTGTCGAGGACGATCTTCCAGAACACACGCTGCGGACT
TTCTTCACACAGTTTGGACAGTTGCGGTCGCTCATTTGCTCCCACCGTGC
TCACTCTGCATTCGTCAACTTCGCCACTCGGGAAGGTGCTGAGGCGGCTG
CCAAGCAGTGCCAGGGTCGGGCTGTCATCCAGGGCTGCCCTCTGCGCGTT
CGCTGGGGTAAGCCCAAGCCGTTGGATAACATGGATCGGGAGGAACGCTT
GAAGAATGCGCGGGAAGGTCGGCAGGCGGCAGGCCCGCGGGGAGCCGATT
CTGGAAAGAAGGCCATCACAGCTGCCGGAGAGGAGATTGGCAAAGAGCAA
AAACAACGGAGTTATGCTGTCGCCCCACCCCCGGGCGCTGGAGAGGTCCA
GTACTCCAGTTTGTCTGGTGATTGAATGCCTCCTCCACAGATCAAGCAGG
ATCTGAACCGGTCCGGATGGGAGACCACTGACTTCCCCTCCGTGTGCGAG
AACTGCCTGCCCGACAATCCTTACGTTCAGATGCTCAAGGAAGACCATGG
CGCAGAATGCAAGATT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000912-T1.utr5p1 | KJC3_000912-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263BDA |
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR034356 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF00076 |
| Product | Pre-mRNA-splicing factor slt11 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:2281446..2282958 - |
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