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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:2330495..2332291+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000933-T1 ID=KJC3_000933-T1|Name=KJC3_000933-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1797bp|location=Sequence derived from alignment at ch1:2330495..2332291+ (Aspergillus niger KJC3)
TCTCGATTTAGGGAAATTTCCTGCCTATCATTCTCAGGTGTAGTAGATCG
AACATCCCTGTTCTCCAATGTCATCTGATACAGTGGGATATAATATGATA
GTATAGGATATTTTAACATTGACTCACTATCTATGCATTTGACATACTCA
ACACCAGAATTTGGAGGAGTAGTAAAAATGAGGTTTCGCCACTCCGAACG
CCGTCGGACGGGGTTTGGTTATTTCACTAGCTGCATGACAAGGCACATCA
ACCACCTGGAAAGCAAACACCGTATGCCAATCAGTAATTCTCCAGGAACT
TAAGCCCATCTGCATTTGAGGTCAGCACGGTACCAGCTTTGTGATTGGGT
AGCTCCATGCGTGAATGTAGAAGCACGATGGAAAAGTCACACCGCAACTT
CATACGCGAGCATTGCATTCCAAATCACACGATTTATGTGTCATACAGTC
ATGCAGCATAGCTGAAAATCTAGACTTCACTTGTCAAATTATTTCAACCA
AGAAGGTTATATGATGTTGGCAGATCCTCATTTAACAGTCGCCCCAGATA
CGCGCCCTCATGGCTACCGAGTCCCTCAAGATCGCTCTTATTTATGAGCT
TCGCGAGGCCTACAAGGCCCTCGGTTACTCAAATGCAGACTGCGACAGGT
TCGAAGTCGGAGAAGCAGCCGAGCACATAGCTGCAGCTCTCAAAAATTTG
GGGCATGAGGTTGTCCTTGTTCCAGACATCCATTCCCTGGTTAAGAGGCT
AGCACATGGCGAGGGTAGTACATGGGACTTGGCATTCAATACCACGGAGG
GCCTACATGGATTAGCTCGAGAAGGTCAAGTTCCCGCATTGTTGGAGGCC
TACCAAATCCCGTTCACATTTTCGGATGCGGCCACGATGACATTGTGTTT
GGACAAGGGCAGAACAAAGGTGGGTGTGCTTACAACCTTAGTCTAACATA
GGCGTTCTTTCAAGTCATTACCAGCTAACATACACTTGCTAGATGGTTCT
TGAGCACTTCAATGTTCCAACTGCTCCGTTTGCAGTGATCCACTTCGATC
ATACCGCTGAGAAGACGCAGGTTTCATTGGACGAGATCCTGTCTATGATT
CGCATGTCTCGCCATTCCGAGACGCTGCTGAGTCAATATCCGTTGTTTGT
GAAGCCTCTTGCTGAAGGCTCTTCCAAAGGAATTGGAGCAACCAACAAAA
TCAAGAGTATTGAATCCCTATGTGATGTCGTCAACTCTCTTCGAGATTCC
AGCCCCTCATCGCTTGGGGTTCTCGTCGAGAAGTATCTTCCGGGTCGAGA
ATTCACTGTGGGCATCCTGGGAACGGGCGAGGATGCATGGGTGGTCGGTG
TCGACGAGATATATGGTGCAGCAAAGAGTCGACGAATTCTAACCCCGAGT
CAGTAGAGTTCACAACTGAAAAATCGAAGTCAGCCGACGATTGGGCTGGA
GAGGCCGATGAGATCAAGATCGGATGGGATGACCAGGAAGCTGACCTTGC
CTGTCAAACAGCTCTTCGGGCATGGACTGTCCTGCGCTGCCGTGATGGAG
GAAGAATTGATATACGGATGGATCACTCTGGGTCGCCAGTCGCTCATGTC
ATGGAGGTAGGTGTATCGACTGAGATACGTACTTGTCCTTGGCTCACCAG
ATTCAGATCAATCCCCTAGCAGGTCTTCTCCCTCATTGGTCGCAGTTGCC
CATGATCGCCGAACACAATAATGTCTCGTACAATGAGCTTATCGAATACA
TACTAAAGAGTGCTTTACAGAGGCGGAGGGGTCGGGTTCTGAACTGA back to topCoding sequence (CDS) from alignment at ch1:2330495..2332291+ >KJC3_000933-T1 ID=KJC3_000933-T1|Name=KJC3_000933-T1|organism=Aspergillus niger KJC3|type=CDS|length=4224bp|location=Sequence derived from alignment at ch1:2330495..2332291+ (Aspergillus niger KJC3)
ATGGCTACCGAGTCCCTCAAGATCGCTCTTATTTATGAGCTTCGCGAGGC
CTACAAGGCCCTCGGTTACTCAAATGCAGACTGCGACAGGTTCGAAGTCG
GAGAAGCAGCCGAGCACATAGCTGCAGCTCTCAAAAATTTGGGGCATGAG
GTTGTCCTTGTTCCAGACATCCATTCCCTGGTTAAGAGGCTAGCACATGG
CGAGGGTAGTACATGGGACTTGGCATTCAATACCACGGAGGGCCTACATG
GATTAGCTCGAGAAGGTCAAGTTCCCGCATTGTTGGAGGCCTACCAAATC
CCGTTCACATTTTCGGATGCGGCCACGATGACATTGTGTTTGGACAAGGG
CAGAACAAAGATGGTTCTTGAGCACTTCAATGTTCCAACTGCTCCGTTTG
CAGTGATCCACTTCGATCATACCGCTGAGAAGACGCAGGTTTCATTGGAC
GAGATCCTGTCTATGATTCGCATGTCTCGCCATTCCGAGACGCTGCTGAG
TCAATATCCGTTGTTTGTGAAGCCTCTTGCTGAAGGCTCTTCCAAAGGAA
TTGGAGCAACCAACAAAATCAAGAGTATTGAATCCCTATGTGATGTCGTC
AACTCTCTTCGAGATTCCAGCCCCTCATCGCTTGGGGTTCTCGTCGAGAA
GTATCTTCCGGGTCGAGAATTCACTGTGGGCATCCTGGGAACGGGCGAGG
ATGCATGGGTGGTCGGTGTCGACGAGATATATGGTGCATCAGCCGACGAT
TGGGCTGGAGAGGCCGATGAGATCAAGATCGGATGGGATGACCAGGAAGC
TGACCTTGCCTGTCAAACAGCTCTTCGGGCATGGACTGTCCTGCGCTGCC
GTGATGGAGGAAGAATTGATATACGGATGGATCACTCTGGGTCGCCAGTC
GCTCATGTCATGGAGATCAATCCCCTAGCAGGTCTTCTCCCTCATTGGTC
GCAGTTGCCCATGATCGCCGAACACAATAATGTCTCGTACAATGAGCTTA
TCGAATACATACTAAAGAGTGCTTTACAGAGGCGGAGGGGTCGGGTTCTG
AACTGAATGGCTACCGAGTCCCTCAAGATCGCTCTTATTTATGAGCTTCG
CGAGGCCTACAAGGCCCTCGGTTACTCAAATGCAGACTGCGACAGGTTCG
AAGTCGGAGAAGCAGCCGAGCACATAGCTGCAGCTCTCAAAAATTTGGGG
CATGAGGTTGTCCTTGTTCCAGACATCCATTCCCTGGTTAAGAGGCTAGC
ACATGGCGAGGGTAGTACATGGGACTTGGCATTCAATACCACGGAGGGCC
TACATGGATTAGCTCGAGAAGGTCAAGTTCCCGCATTGTTGGAGGCCTAC
CAAATCCCGTTCACATTTTCGGATGCGGCCACGATGACATTGTGTTTGGA
CAAGGGCAGAACAAAGATGGTTCTTGAGCACTTCAATGTTCCAACTGCTC
CGTTTGCAGTGATCCACTTCGATCATACCGCTGAGAAGACGCAGGTTTCA
TTGGACGAGATCCTGTCTATGATTCGCATGTCTCGCCATTCCGAGACGCT
GCTGAGTCAATATCCGTTGTTTGTGAAGCCTCTTGCTGAAGGCTCTTCCA
AAGGAATTGGAGCAACCAACAAAATCAAGAGTATTGAATCCCTATGTGAT
GTCGTCAACTCTCTTCGAGATTCCAGCCCCTCATCGCTTGGGGTTCTCGT
CGAGAAGTATCTTCCGGGTCGAGAATTCACTGTGGGCATCCTGGGAACGG
GCGAGGATGCATGGGTGGTCGGTGTCGACGAGATATATGGTGCATCAGCC
GACGATTGGGCTGGAGAGGCCGATGAGATCAAGATCGGATGGGATGACCA
GGAAGCTGACCTTGCCTGTCAAACAGCTCTTCGGGCATGGACTGTCCTGC
GCTGCCGTGATGGAGGAAGAATTGATATACGGATGGATCACTCTGGGTCG
CCAGTCGCTCATGTCATGGAGATCAATCCCCTAGCAGGTCTTCTCCCTCA
TTGGTCGCAGTTGCCCATGATCGCCGAACACAATAATGTCTCGTACAATG
AGCTTATCGAATACATACTAAAGAGTGCTTTACAGAGGCGGAGGGGTCGG
GTTCTGAACTGAATGGCTACCGAGTCCCTCAAGATCGCTCTTATTTATGA
GCTTCGCGAGGCCTACAAGGCCCTCGGTTACTCAAATGCAGACTGCGACA
GGTTCGAAGTCGGAGAAGCAGCCGAGCACATAGCTGCAGCTCTCAAAAAT
TTGGGGCATGAGGTTGTCCTTGTTCCAGACATCCATTCCCTGGTTAAGAG
GCTAGCACATGGCGAGGGTAGTACATGGGACTTGGCATTCAATACCACGG
AGGGCCTACATGGATTAGCTCGAGAAGGTCAAGTTCCCGCATTGTTGGAG
GCCTACCAAATCCCGTTCACATTTTCGGATGCGGCCACGATGACATTGTG
TTTGGACAAGGGCAGAACAAAGATGGTTCTTGAGCACTTCAATGTTCCAA
CTGCTCCGTTTGCAGTGATCCACTTCGATCATACCGCTGAGAAGACGCAG
GTTTCATTGGACGAGATCCTGTCTATGATTCGCATGTCTCGCCATTCCGA
GACGCTGCTGAGTCAATATCCGTTGTTTGTGAAGCCTCTTGCTGAAGGCT
CTTCCAAAGGAATTGGAGCAACCAACAAAATCAAGAGTATTGAATCCCTA
TGTGATGTCGTCAACTCTCTTCGAGATTCCAGCCCCTCATCGCTTGGGGT
TCTCGTCGAGAAGTATCTTCCGGGTCGAGAATTCACTGTGGGCATCCTGG
GAACGGGCGAGGATGCATGGGTGGTCGGTGTCGACGAGATATATGGTGCA
TCAGCCGACGATTGGGCTGGAGAGGCCGATGAGATCAAGATCGGATGGGA
TGACCAGGAAGCTGACCTTGCCTGTCAAACAGCTCTTCGGGCATGGACTG
TCCTGCGCTGCCGTGATGGAGGAAGAATTGATATACGGATGGATCACTCT
GGGTCGCCAGTCGCTCATGTCATGGAGATCAATCCCCTAGCAGGTCTTCT
CCCTCATTGGTCGCAGTTGCCCATGATCGCCGAACACAATAATGTCTCGT
ACAATGAGCTTATCGAATACATACTAAAGAGTGCTTTACAGAGGCGGAGG
GGTCGGGTTCTGAACTGAATGGCTACCGAGTCCCTCAAGATCGCTCTTAT
TTATGAGCTTCGCGAGGCCTACAAGGCCCTCGGTTACTCAAATGCAGACT
GCGACAGGTTCGAAGTCGGAGAAGCAGCCGAGCACATAGCTGCAGCTCTC
AAAAATTTGGGGCATGAGGTTGTCCTTGTTCCAGACATCCATTCCCTGGT
TAAGAGGCTAGCACATGGCGAGGGTAGTACATGGGACTTGGCATTCAATA
CCACGGAGGGCCTACATGGATTAGCTCGAGAAGGTCAAGTTCCCGCATTG
TTGGAGGCCTACCAAATCCCGTTCACATTTTCGGATGCGGCCACGATGAC
ATTGTGTTTGGACAAGGGCAGAACAAAGATGGTTCTTGAGCACTTCAATG
TTCCAACTGCTCCGTTTGCAGTGATCCACTTCGATCATACCGCTGAGAAG
ACGCAGGTTTCATTGGACGAGATCCTGTCTATGATTCGCATGTCTCGCCA
TTCCGAGACGCTGCTGAGTCAATATCCGTTGTTTGTGAAGCCTCTTGCTG
AAGGCTCTTCCAAAGGAATTGGAGCAACCAACAAAATCAAGAGTATTGAA
TCCCTATGTGATGTCGTCAACTCTCTTCGAGATTCCAGCCCCTCATCGCT
TGGGGTTCTCGTCGAGAAGTATCTTCCGGGTCGAGAATTCACTGTGGGCA
TCCTGGGAACGGGCGAGGATGCATGGGTGGTCGGTGTCGACGAGATATAT
GGTGCATCAGCCGACGATTGGGCTGGAGAGGCCGATGAGATCAAGATCGG
ATGGGATGACCAGGAAGCTGACCTTGCCTGTCAAACAGCTCTTCGGGCAT
GGACTGTCCTGCGCTGCCGTGATGGAGGAAGAATTGATATACGGATGGAT
CACTCTGGGTCGCCAGTCGCTCATGTCATGGAGATCAATCCCCTAGCAGG
TCTTCTCCCTCATTGGTCGCAGTTGCCCATGATCGCCGAACACAATAATG
TCTCGTACAATGAGCTTATCGAATACATACTAAAGAGTGCTTTACAGAGG
CGGAGGGGTCGGGTTCTGAACTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0005524 | ATP binding |
| GO:0008716 | D-alanine-D-alanine ligase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000933-T1.utr5p1 | KJC3_000933-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR016185 |
| DBxref | InterPro:IPR011761 |
| DBxref | InterPro:IPR013815 |
| DBxref | InterPro:IPR011095 |
| DBxref | PFAM:PF07478 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:2330495..2332291 + |
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