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KJC3_000979-T1, KJC3_000979-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000979-T1
Unique NameKJC3_000979-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:2474040..2475334-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000979-T1 ID=KJC3_000979-T1|Name=KJC3_000979-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1295bp|location=Sequence derived from alignment at ch1:2474040..2475334- (Aspergillus niger KJC3)
CCGCTACTTCAATTGGCCTTTCTCCTCGATCTACTATTTGCTCTACATCA
GTCGCTTCGCGCAGCTTCCTTTTCTTTCGTGCATGATACCCCAATAGAAC
CCGTTATCGATCCCGCCCGCCACCATGCGATTGACCGTTGAACTGATCCA
AAATTCCCTGTCCTACATTAACCCGCTCAAAGACCGCGAGCTAGATCTTC
GAGGTGCGTTCCAGCCACCTGTCCTGAAAAGAACAGATACTACACTTTTG
AGATGAGCTTGATTGATATCGGTTTTGTGTTTGAGTCGTATAGGGCACAA
GATACCCGCTATTGAGAACTTGGGTATTGCCAAGGTAACCTCTTCCCACC
ACCTCATTTCTCTCTTGGAATGTCTTCGCGGCATTGTATATGGTATAGAG
GCTAAGAAAGGAACGGTAGGACCAAGATGCAATCGACCTAACAGACAACG
ATATCACCTCCCTCGGAAACTTTCCCTTCTTTCCTCGCCTCCGCACCCTC
CTCCTCGCGCGTAACCGAGTCAAGCAGATCCAGCCGACGATATCGACCTC
AGTGCCGAATCTGAGCGCGCTGGTGTTGACGGCGAATAACATGAACGAGT
TGGCGGATTTGGACCCGCTTAGAAATCTGGCCCAGTTGACGCATTTGGTG
TTGCTGGAGAATCCTGTTACCAGGAAGGAGGTAAGCTTCCCCTTTTCTTC
TATTTCCTTTCCTAGCGAGATCAAAGCAAAGCAAAGTCTAACATAAATGG
TATTGGTGTAGCACTATCGCTACTACGTCATCTGGCGCATCCCCAGCGTC
CGCTTCCTCGACTACCAGAAAGTGAAGGACGCGGAGCGCGAAAAAGCCAC
CGAGTTGTTCGGCACAGCGGAGGAGCCGTCTGCGCTGGCGTCTAAGATCA
TGGGAATCAAGTCTCGCACGTTTGATGTGCCCTCGGGCGCTGGGGGTGCG
GATCGTGGTGCGCCCGCGGATAAGGCGGTGCGGGTGAAGTTGACGGAGAA
GGAGAGGAAGAGGGTGGAGAAGATGATTCGCGAGGCGAAGAGTTTGCAGG
AGATTTCGCGGTTGGAGAAGGAGTTGAATGAGGGCAGGATACCTGGAGGT
GCGTTGGATTATGCTGATAGTGATGAGGAGATGCAGACATAGTAGTAGAT
GGGGGAGTGGTTTGTTTTGTTTCTGCTCGGGATTGCTTGATGTATTATTT
GTGGTATATTTATTATGTGGTTAGTGCTGAATGGATGGCACGGTGTTTGG
TCAATAAAAGACTCTTTCTGATACTATAACTTAGATGTACTGGTT
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Coding sequence (CDS) from alignment at ch1:2474040..2475334-

>KJC3_000979-T1 ID=KJC3_000979-T1|Name=KJC3_000979-T1|organism=Aspergillus niger KJC3|type=CDS|length=3048bp|location=Sequence derived from alignment at ch1:2474040..2475334- (Aspergillus niger KJC3)
CACTATCGCTACTACGTCATCTGGCGCATCCCCAGCGTCCGCTTCCTCGA
CTACCAGAAAGTGAAGGACGCGGAGCGCGAAAAAGCCACCGAGTTGTTCG
GCACAGCGGAGGAGCCGTCTGCGCTGGCGTCTAAGATCATGGGAATCAAG
TCTCGCACGTTTGATGTGCCCTCGGGCGCTGGGGGTGCGGATCGTGGTGC
GCCCGCGGATAAGGCGGTGCGGGTGAAGTTGACGGAGAAGGAGAGGAAGA
GGGTGGAGAAGATGATTCGCGAGGCGAAGAGTTTGCAGGAGATTTCGCGG
TTGGAGAAGGAGTTGAATGAGGGCAGGATACCTGGAGGTGCGTTGGATTA
TGCTGATAGTGATGAGGAGATGCAGACATAGGACCAAGATGCAATCGACC
TAACAGACAACGATATCACCTCCCTCGGAAACTTTCCCTTCTTTCCTCGC
CTCCGCACCCTCCTCCTCGCGCGTAACCGAGTCAAGCAGATCCAGCCGAC
GATATCGACCTCAGTGCCGAATCTGAGCGCGCTGGTGTTGACGGCGAATA
ACATGAACGAGTTGGCGGATTTGGACCCGCTTAGAAATCTGGCCCAGTTG
ACGCATTTGGTGTTGCTGGAGAATCCTGTTACCAGGAAGGAGGGCACAAG
ATACCCGCTATTGAGAACTTGGGTATTGCCAAGATGCGATTGACCGTTGA
ACTGATCCAAAATTCCCTGTCCTACATTAACCCGCTCAAAGACCGCGAGC
TAGATCTTCGAGCACTATCGCTACTACGTCATCTGGCGCATCCCCAGCGT
CCGCTTCCTCGACTACCAGAAAGTGAAGGACGCGGAGCGCGAAAAAGCCA
CCGAGTTGTTCGGCACAGCGGAGGAGCCGTCTGCGCTGGCGTCTAAGATC
ATGGGAATCAAGTCTCGCACGTTTGATGTGCCCTCGGGCGCTGGGGGTGC
GGATCGTGGTGCGCCCGCGGATAAGGCGGTGCGGGTGAAGTTGACGGAGA
AGGAGAGGAAGAGGGTGGAGAAGATGATTCGCGAGGCGAAGAGTTTGCAG
GAGATTTCGCGGTTGGAGAAGGAGTTGAATGAGGGCAGGATACCTGGAGG
TGCGTTGGATTATGCTGATAGTGATGAGGAGATGCAGACATAGGACCAAG
ATGCAATCGACCTAACAGACAACGATATCACCTCCCTCGGAAACTTTCCC
TTCTTTCCTCGCCTCCGCACCCTCCTCCTCGCGCGTAACCGAGTCAAGCA
GATCCAGCCGACGATATCGACCTCAGTGCCGAATCTGAGCGCGCTGGTGT
TGACGGCGAATAACATGAACGAGTTGGCGGATTTGGACCCGCTTAGAAAT
CTGGCCCAGTTGACGCATTTGGTGTTGCTGGAGAATCCTGTTACCAGGAA
GGAGGGCACAAGATACCCGCTATTGAGAACTTGGGTATTGCCAAGATGCG
ATTGACCGTTGAACTGATCCAAAATTCCCTGTCCTACATTAACCCGCTCA
AAGACCGCGAGCTAGATCTTCGAGCACTATCGCTACTACGTCATCTGGCG
CATCCCCAGCGTCCGCTTCCTCGACTACCAGAAAGTGAAGGACGCGGAGC
GCGAAAAAGCCACCGAGTTGTTCGGCACAGCGGAGGAGCCGTCTGCGCTG
GCGTCTAAGATCATGGGAATCAAGTCTCGCACGTTTGATGTGCCCTCGGG
CGCTGGGGGTGCGGATCGTGGTGCGCCCGCGGATAAGGCGGTGCGGGTGA
AGTTGACGGAGAAGGAGAGGAAGAGGGTGGAGAAGATGATTCGCGAGGCG
AAGAGTTTGCAGGAGATTTCGCGGTTGGAGAAGGAGTTGAATGAGGGCAG
GATACCTGGAGGTGCGTTGGATTATGCTGATAGTGATGAGGAGATGCAGA
CATAGGACCAAGATGCAATCGACCTAACAGACAACGATATCACCTCCCTC
GGAAACTTTCCCTTCTTTCCTCGCCTCCGCACCCTCCTCCTCGCGCGTAA
CCGAGTCAAGCAGATCCAGCCGACGATATCGACCTCAGTGCCGAATCTGA
GCGCGCTGGTGTTGACGGCGAATAACATGAACGAGTTGGCGGATTTGGAC
CCGCTTAGAAATCTGGCCCAGTTGACGCATTTGGTGTTGCTGGAGAATCC
TGTTACCAGGAAGGAGGGCACAAGATACCCGCTATTGAGAACTTGGGTAT
TGCCAAGATGCGATTGACCGTTGAACTGATCCAAAATTCCCTGTCCTACA
TTAACCCGCTCAAAGACCGCGAGCTAGATCTTCGAGCACTATCGCTACTA
CGTCATCTGGCGCATCCCCAGCGTCCGCTTCCTCGACTACCAGAAAGTGA
AGGACGCGGAGCGCGAAAAAGCCACCGAGTTGTTCGGCACAGCGGAGGAG
CCGTCTGCGCTGGCGTCTAAGATCATGGGAATCAAGTCTCGCACGTTTGA
TGTGCCCTCGGGCGCTGGGGGTGCGGATCGTGGTGCGCCCGCGGATAAGG
CGGTGCGGGTGAAGTTGACGGAGAAGGAGAGGAAGAGGGTGGAGAAGATG
ATTCGCGAGGCGAAGAGTTTGCAGGAGATTTCGCGGTTGGAGAAGGAGTT
GAATGAGGGCAGGATACCTGGAGGTGCGTTGGATTATGCTGATAGTGATG
AGGAGATGCAGACATAGGACCAAGATGCAATCGACCTAACAGACAACGAT
ATCACCTCCCTCGGAAACTTTCCCTTCTTTCCTCGCCTCCGCACCCTCCT
CCTCGCGCGTAACCGAGTCAAGCAGATCCAGCCGACGATATCGACCTCAG
TGCCGAATCTGAGCGCGCTGGTGTTGACGGCGAATAACATGAACGAGTTG
GCGGATTTGGACCCGCTTAGAAATCTGGCCCAGTTGACGCATTTGGTGTT
GCTGGAGAATCCTGTTACCAGGAAGGAGGGCACAAGATACCCGCTATTGA
GAACTTGGGTATTGCCAAGATGCGATTGACCGTTGAACTGATCCAAAATT
CCCTGTCCTACATTAACCCGCTCAAAGACCGCGAGCTAGATCTTCGAG
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LEA1KJC3_000979Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000979-T1KJC3_000979-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000979-T1.cdsKJC3_000979-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000979-T1.utr3p1KJC3_000979-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000979-T1.exon4KJC3_000979-T1.exon4Aspergillus niger KJC3exon
KJC3_000979-T1.exon3KJC3_000979-T1.exon3Aspergillus niger KJC3exon
KJC3_000979-T1.exon2KJC3_000979-T1.exon2Aspergillus niger KJC3exon
KJC3_000979-T1.exon1KJC3_000979-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000979-T1.utr5p1KJC3_000979-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR032675
DBxrefPFAM:PF14580
DBxrefPFAM:PF13855
ProductU2 snRNP complex subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:2474040..2475334 -
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