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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:2520136..2521537- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000992-T1 ID=KJC3_000992-T1|Name=KJC3_000992-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1402bp|location=Sequence derived from alignment at ch1:2520136..2521537- (Aspergillus niger KJC3)
CCCGGACCAAGAATCATCGACTGTGGTGCGAGAAAGCCATGTAGCCTCCT
GTTCCTTCACCTGAGTGATTTGATTACTCTATAGAGGCCAATCGATGGTT
GATAGCCGTCAGGGTCAAGTTGAACCCCCTCCAAAGCTGGTTGAACCCCT
GATGGTCGATCGGAGCCACTGATGACTGCCCTCAACGTCAGACCGATTTG
TAAGCCAGCAACAGCGGGGCTCCAAGACACACCCTTTTGGGCTTCACACC
ATCAAGCCAACGACCCCTGACTTGCACATCTTCCCTCTACATAGCATTGC
ATAGGACAAATCTACACACAGTCCATCACTACATTCCTACATATCACGAG
GCCTTGAAAGAGGAGCACCTGTGCGACCACCCTTACGTCATACGCTACGC
ACACACCATGGCCAAAATCGGTGTCTTTCCTGCAGCAGGAGGACTGGGGA
CCAGCATCATCAATCACCTCGTCAAGCTGGTGCCTGCATCGGAATTGATC
CTGATCGCCCGCAAGCCAGATAATCTTGCAGAACTCACGCGGGCCGGAGC
TACCGTCCGACGGGCCGACTATGAAGACCCCGCCACGCTAGAGCGCGCCT
TCGATGGCATCGGCATCCTGATGTTGATCTCGTATGCCTCGTTTGAGATC
CAGTTCCGGTTCGAGGTAGGTTGCAGCGACATCCCGAGCGGGCATATTGC
TGGCGTGATGCTGATCAGAGGCAGGCACATAAGAATGCCATTGACGCTGC
CCGCCGCAGCGGTGTCAAGCACATCTTCTATTCGTCTCTCGCCTTTGCAG
GCGATCTAGAGGAGACTAGCGTCGCGCACGTGATGGGCGCCCATCTGCGG
ACCGAAAAGTATTTGGCCGAACTTCCCGGGCACTTCACCTACACCGCTAT
CCGGGAGGGTCTGTACTCGGAGTCCTATCCGATCTACACCAGCTGGTTCG
ATATCCACCACCCCGCAGACGAGATCGCGATCCCTCACTCGGGCGACGGA
CCGGGCGTTGCGTGGGTGAAACGTGACGAGCTGGGGGAGGCCACGGCGAA
GCTGATTGCAGACTATGCCAAGAATCCGGCGGGGTTCCCCTACCTGAACC
GTGTGCTTTTGCTCTCTGGCCCCAGGGAGGTCTCGCTGAAGGAGACGGTC
GAGATTCTCGGCCAGGCCGTTGGCAAGTCCCTTCCGCTGCGGGAGATCTC
TGTCGACGAGTATGTGGCTTTACCGCAGCACGGATCCAAACACACCTACC
ATGGTATCGATCTGACGCGGGAGTGGGCATCCGCGTGGGATGCTATTCGT
CGCGGGGAGACGGCCGTGGTGTCGCCGCTCCTGGAGCAAATCTTGGGGCG
AGAACCTGAGAGCTTTGAGACAACAGTAAAAACGTTGGCAGGGAGCAAGT
AG back to topCoding sequence (CDS) from alignment at ch1:2520136..2521537- >KJC3_000992-T1 ID=KJC3_000992-T1|Name=KJC3_000992-T1|organism=Aspergillus niger KJC3|type=CDS|length=1872bp|location=Sequence derived from alignment at ch1:2520136..2521537- (Aspergillus niger KJC3)
GCACATAAGAATGCCATTGACGCTGCCCGCCGCAGCGGTGTCAAGCACAT
CTTCTATTCGTCTCTCGCCTTTGCAGGCGATCTAGAGGAGACTAGCGTCG
CGCACGTGATGGGCGCCCATCTGCGGACCGAAAAGTATTTGGCCGAACTT
CCCGGGCACTTCACCTACACCGCTATCCGGGAGGGTCTGTACTCGGAGTC
CTATCCGATCTACACCAGCTGGTTCGATATCCACCACCCCGCAGACGAGA
TCGCGATCCCTCACTCGGGCGACGGACCGGGCGTTGCGTGGGTGAAACGT
GACGAGCTGGGGGAGGCCACGGCGAAGCTGATTGCAGACTATGCCAAGAA
TCCGGCGGGGTTCCCCTACCTGAACCGTGTGCTTTTGCTCTCTGGCCCCA
GGGAGGTCTCGCTGAAGGAGACGGTCGAGATTCTCGGCCAGGCCGTTGGC
AAGTCCCTTCCGCTGCGGGAGATCTCTGTCGACGAGTATGTGGCTTTACC
GCAGCACGGATCCAAACACACCTACCATGGTATCGATCTGACGCGGGAGT
GGGCATCCGCGTGGGATGCTATTCGTCGCGGGGAGACGGCCGTGGTGTCG
CCGCTCCTGGAGCAAATCTTGGGGCGAGAACCTGAGAGCTTTGAGACAAC
AGTAAAAACGTTGGCAGGGAGCAAGTAGATGGCCAAAATCGGTGTCTTTC
CTGCAGCAGGAGGACTGGGGACCAGCATCATCAATCACCTCGTCAAGCTG
GTGCCTGCATCGGAATTGATCCTGATCGCCCGCAAGCCAGATAATCTTGC
AGAACTCACGCGGGCCGGAGCTACCGTCCGACGGGCCGACTATGAAGACC
CCGCCACGCTAGAGCGCGCCTTCGATGGCATCGGCATCCTGATGTTGATC
TCGTATGCCTCGTTTGAGATCCAGTTCCGGTTCGAGGCACATAAGAATGC
CATTGACGCTGCCCGCCGCAGCGGTGTCAAGCACATCTTCTATTCGTCTC
TCGCCTTTGCAGGCGATCTAGAGGAGACTAGCGTCGCGCACGTGATGGGC
GCCCATCTGCGGACCGAAAAGTATTTGGCCGAACTTCCCGGGCACTTCAC
CTACACCGCTATCCGGGAGGGTCTGTACTCGGAGTCCTATCCGATCTACA
CCAGCTGGTTCGATATCCACCACCCCGCAGACGAGATCGCGATCCCTCAC
TCGGGCGACGGACCGGGCGTTGCGTGGGTGAAACGTGACGAGCTGGGGGA
GGCCACGGCGAAGCTGATTGCAGACTATGCCAAGAATCCGGCGGGGTTCC
CCTACCTGAACCGTGTGCTTTTGCTCTCTGGCCCCAGGGAGGTCTCGCTG
AAGGAGACGGTCGAGATTCTCGGCCAGGCCGTTGGCAAGTCCCTTCCGCT
GCGGGAGATCTCTGTCGACGAGTATGTGGCTTTACCGCAGCACGGATCCA
AACACACCTACCATGGTATCGATCTGACGCGGGAGTGGGCATCCGCGTGG
GATGCTATTCGTCGCGGGGAGACGGCCGTGGTGTCGCCGCTCCTGGAGCA
AATCTTGGGGCGAGAACCTGAGAGCTTTGAGACAACAGTAAAAACGTTGG
CAGGGAGCAAGTAGATGGCCAAAATCGGTGTCTTTCCTGCAGCAGGAGGA
CTGGGGACCAGCATCATCAATCACCTCGTCAAGCTGGTGCCTGCATCGGA
ATTGATCCTGATCGCCCGCAAGCCAGATAATCTTGCAGAACTCACGCGGG
CCGGAGCTACCGTCCGACGGGCCGACTATGAAGACCCCGCCACGCTAGAG
CGCGCCTTCGATGGCATCGGCATCCTGATGTTGATCTCGTATGCCTCGTT
TGAGATCCAGTTCCGGTTCGAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000992-T1.utr5p1 | KJC3_000992-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR008030 |
| DBxref | PFAM:PF05368 |
| DBxref | PFAM:PF13460 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:2520136..2521537 - |
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