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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:2570455..2573141- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001011-T1 ID=KJC3_001011-T1|Name=KJC3_001011-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2687bp|location=Sequence derived from alignment at ch1:2570455..2573141- (Aspergillus niger KJC3)
GCCCCCAGATTCAGGCTGCTTTGCTGTTGGTTTATTGCGATGTTGTCGAA
CTGCCGAAAATAAAGAGTCGAGAAACTGCTTTCATATGTGTGCGATTATC
CACGCAGGTATCGTAGCAAATACAGGCTACTAGTACCCTTCACTATCAGT
CCTATACGGAAATGTCCAAGGACTTCTTCACTATAATTTTATTTGACGGG
AACTAACAGTGATTAATCATTAGTTACTGGTACCTCTAAGTGACTCATAC
ATGAAACAATGTTTTAAATGGAAAATCTCAGATATACGATCGACCGCATA
ACAGTCAAAAGATCGCATGGTGCTTACCGTCATGGAACAATACCAAGCAT
GTGATTCAGTGGGGGTTCCCTGGATTCAAGCTCAAGCAATGGACTTTATG
CTTTCCCTACATGCTATGTAAACCGCATGGTTGCTCTTGCATTGATATAA
GTATGTAGTCGTTGTACCATAGATGTCACTTCTCCTATCGACTCATTGCT
CACCACTGGAGCATTTGTCATACTCTATCTCTCTCCCCAGATCATCGATA
CATCTTTGCCTTCAAAGGTTCCTGTCTGTTTTGCATAGCCAGTTTTCATC
TCCATCACCCATCCTCTCCCGATTACTGCAATATCCTCACCATGTCAGTG
AATCCATCTGACCCACGCAGGCAGAACTTGATAGGCATCTTTGGCCTTCC
CGGATCTGGGAAGACCTATCTTCTCAATCAACTCAGAAGGGAGCTCGAAG
GGGGCCCTTTTTCATTCTATGAGTTTGAGGAGGTCGGCCAAACCAGGCCT
TCTAACTGGTTTGTCAATGATAGGGCCTTTGAATCTATCAGGCATGAATG
CGATCAATCAGGGGTCGCAGGAATTGCCACAGCTAATTACATGCTACCGG
ACGAGGACGGCTATCTTCCATGCGAGATAATTCTTGATGATGGCTGTCCT
AATGGGCCGTTCACGCATATTATATATTTGAACACCCCTGTCGAGGTGGT
CCATCGCCGTTGCATGGACGACGCTGAAAAGGAACTAAGTTGGTGTTCCC
TTGATTACTTTCGTGAATGGGCCGATGAAGAAATCATTGGGCTGAAATAC
GCGTGTTTAGACCGGAAGATCATGTTCACCATTGTGGACCCTCTTGACAT
TTCGAGGATTATCACCCTCATCCACACCATTCAGCATGATCGAAATGAAG
AGCACAACCAAGGTATAGTGGATAAGTGTATTGACGAGATTGTAGCCCCT
TGGCAAGGGCATGTGGAGAAGGATATAGTCATGGACTGCGATGGAATCCT
CACACCCAAATATGAAGAGCAGATCTTCTGGGGAAAATACTATTTCGGTG
ATTGTGCCGATGTTGACGAGGGACGCTGTCAGTTGCCGGATAAGCATCCA
TGGAGTGGATTCATAGCCGATGACTTTAATTGCCGTCAATCAAGCTTAGC
TTATGAGCAAGTTGCGGCGGAGGGCCGATTTGAGGAGACCTGCGAAAAGG
CTGCGTCCGCAATTTCTCTATATCCTGAAATCAGAAGCTTTTTAGATCGT
GTCTCGCAGTATCCGCGCCTTCGCATAATCATAGTGACTTCCAGACTACG
CTTGCTGTGGGAAAGAGTTCTGGCCCAAGAGGGTCTCTCACATTCCATCA
AAGTCACTGGCTCGGGCCCACTTTCTAACGGTTATATCGTGACCCCCTCA
GTTAAAGAGAGACTGGTCGAACGCCTCAGGACAGTCCATAACTTGCAGGT
ATGGGCCTTTGGAGGCTCCGGTTCGCCTGAGAAGATGCTTCATCGAGCAC
ATTATTCGGTTATCCTTCATCGGCCAACTAATCCCCACTGTAATGCGAAA
TGGTTATCCAGCATGGCTTCGGCATCTAAGGATTCGAAGGATTGCATAGA
TTCAACCACCCTCCATCTGAGGGAACTCGAGGAGCCTGCATTTTTTGATC
AACTCGTTCAACATCAGCTTACCCTTACTCACGCGACCCACAAGGGCACA
GCAAAGTTGCTGCATACGAAAATGCTGAAAACAATTTATTTTCCCAATCA
CGATCTGGAGGAAAAGGTCTTTCACGAAGCTGGATGGTATCTCGCCAACG
AATACATAAGCGAGCTACGAGGCCTTGAGGAGGTTGCAATTGAGAATCCC
CAGGAGCCTAAAGCGACTGGTTATCAACTGGTCCGTGAAAGCGGCATGCC
TATCGTTCCCCTAATGGGGAATAGTCACCACATGGCTGCCGGAATCTGCG
ATGTCTTCAAGGAAGCTTGCCCGCTGCAAGCATATGACCCAGAAGAGATC
GATCTCGACCATCTACAGGAAAAGGACACTGTTGTGCTTGTGGCAGCTGT
CGCGGATAGTGCCGAAACCATCACGCGTTTCGTCAACCACATCCACGGAG
TGAAACCATGCCTTCCTATCTTGGTTGTGGCTGGAGTGCTTCAAGCTGAG
CTAGTCGCACCTGGTGGTCCGCTGCCGTCTCTCATTCAAGGCGGCCCCAT
CACGGTGGTTGCACTTAGTCTGGCAAAAGGCAAGGACATGACTACTGAGA
ACTACATTTATGATACCGCGCGTATTTCCTGAGGTGTGCCTGGCTTTTCT
GAGAGCTTTCAGCCTTCTCAATGTTCGACGTTCATCAAAATTGTTCATAT
CTACTGTCTAGCTACCACACCACTTTAATTTGCATCC back to topCoding sequence (CDS) from alignment at ch1:2570455..2573141- >KJC3_001011-T1 ID=KJC3_001011-T1|Name=KJC3_001011-T1|organism=Aspergillus niger KJC3|type=CDS|length=3738bp|location=Sequence derived from alignment at ch1:2570455..2573141- (Aspergillus niger KJC3)
ACCGGAAGATCATGTTCACCATTGTGGACCCTCTTGACATTTCGAGGATT
ATCACCCTCATCCACACCATTCAGCATGATCGAAATGAAGAGCACAACCA
AGGTATAGTGGATAAGTGTATTGACGAGATTGTAGCCCCTTGGCAAGGGC
ATGTGGAGAAGGATATAGTCATGGACTGCGATGGAATCCTCACACCCAAA
TATGAAGAGCAGATCTTCTGGGGAAAATACTATTTCGGTGATTGTGCCGA
TGTTGACGAGGGACGCTGTCAGTTGCCGGATAAGCATCCATGGAGTGGAT
TCATAGCCGATGACTTTAATTGCCGTCAATCAAGCTTAGCTTATGAGCAA
GTTGCGGCGGAGGGCCGATTTGAGGAGACCTGCGAAAAGGCTGCGTCCGC
AATTTCTCTATATCCTGAAATCAGAAGCTTTTTAGATCGTGTCTCGCAGT
ATCCGCGCCTTCGCATAATCATAGTGACTTCCAGACTACGCTTGCTGTGG
GAAAGAGTTCTGGCCCAAGAGGGTCTCTCACATTCCATCAAAGTCACTGG
CTCGGGCCCACTTTCTAACGGTTATATCGTGACCCCCTCAGTTAAAGAGA
GACTGGTCGAACGCCTCAGGACAGTCCATAACTTGCAGGTATGGGCCTTT
GGAGGCTCCGGTTCGCCTGAGAAGATGCTTCATCGAGCACATTATTCGGT
TATCCTTCATCGGCCAACTAATCCCCACTGTAATGCGAAATGGTTATCCA
GCATGGCTTCGGCATCTAAGGATTCGAAGGATTGCATAGATTCAACCACC
CTCCATCTGAGGGAACTCGAGGAGCCTGCATTTTTTGATCAACTCGTTCA
ACATCAGCTTACCCTTACTCACGCGACCCACAAGGGCACAGCAAAGTTGC
TGCATACGAAAATGCTGAAAACAATTTATTTTCCCAATCACGATCTGGAG
GAAAAGGTCTTTCACGAAGCTGGATGGTATCTCGCCAACGAATACATAAG
CGAGCTACGAGGCCTTGAGGAGGTTGCAATTGAGAATCCCCAGGAGCCTA
AAGCGACTGGTTATCAACTGGTCCGTGAAAGCGGCATGCCTATCGTTCCC
CTAATGGGGAATAGTCACCACATGGCTGCCGGAATCTGCGATGTCTTCAA
GGAAGCTTGCCCGCTGCAAGCATATGACCCAGAAGAGATCGATCTCGACC
ATCTACAGGAAAAGGACACTGTTGTGCTTGTGGCAGCTGTCGCGGATAGT
GCCGAAACCATCACGCGTTTCGTCAACCACATCCACGGAGTGAAACCATG
CCTTCCTATCTTGGTTGTGGCTGGAGTGCTTCAAGCTGAGCTAGTCGCAC
CTGGTGGTCCGCTGCCGTCTCTCATTCAAGGCGGCCCCATCACGGTGGTT
GCACTTAGTCTGGCAAAAGGCAAGGACATGACTACTGAGAACTACATTTA
TGATACCGCGCGTATTTCCTGAATGTCAGTGAATCCATCTGACCCACGCA
GGCAGAACTTGATAGGCATCTTTGGCCTTCCCGGATCTGGGAAGACCTAT
CTTCTCAATCAACTCAGAAGGGAGCTCGAAGGGGGCCCTTTTTCATTCTA
TGAGTTTGAGGAGGTCGGCCAAACCAGGCCTTCTAACTGGTTTGTCAATG
ATAGGGCCTTTGAATCTATCAGGCATGAATGCGATCAATCAGGGGTCGCA
GGAATTGCCACAGCTAATTACATGCTACCGGACGAGGACGGCTATCTTCC
ATGCGAGATAATTCTTGATGATGGCTGTCCTAATGGGCCGTTCACGCATA
TTATATATTTGAACACCCCTGTCGAGGTGGTCCATCGCCGTTGCATGGAC
GACGCTGAAAAGGAACTAAACCGGAAGATCATGTTCACCATTGTGGACCC
TCTTGACATTTCGAGGATTATCACCCTCATCCACACCATTCAGCATGATC
GAAATGAAGAGCACAACCAAGGTATAGTGGATAAGTGTATTGACGAGATT
GTAGCCCCTTGGCAAGGGCATGTGGAGAAGGATATAGTCATGGACTGCGA
TGGAATCCTCACACCCAAATATGAAGAGCAGATCTTCTGGGGAAAATACT
ATTTCGGTGATTGTGCCGATGTTGACGAGGGACGCTGTCAGTTGCCGGAT
AAGCATCCATGGAGTGGATTCATAGCCGATGACTTTAATTGCCGTCAATC
AAGCTTAGCTTATGAGCAAGTTGCGGCGGAGGGCCGATTTGAGGAGACCT
GCGAAAAGGCTGCGTCCGCAATTTCTCTATATCCTGAAATCAGAAGCTTT
TTAGATCGTGTCTCGCAGTATCCGCGCCTTCGCATAATCATAGTGACTTC
CAGACTACGCTTGCTGTGGGAAAGAGTTCTGGCCCAAGAGGGTCTCTCAC
ATTCCATCAAAGTCACTGGCTCGGGCCCACTTTCTAACGGTTATATCGTG
ACCCCCTCAGTTAAAGAGAGACTGGTCGAACGCCTCAGGACAGTCCATAA
CTTGCAGGTATGGGCCTTTGGAGGCTCCGGTTCGCCTGAGAAGATGCTTC
ATCGAGCACATTATTCGGTTATCCTTCATCGGCCAACTAATCCCCACTGT
AATGCGAAATGGTTATCCAGCATGGCTTCGGCATCTAAGGATTCGAAGGA
TTGCATAGATTCAACCACCCTCCATCTGAGGGAACTCGAGGAGCCTGCAT
TTTTTGATCAACTCGTTCAACATCAGCTTACCCTTACTCACGCGACCCAC
AAGGGCACAGCAAAGTTGCTGCATACGAAAATGCTGAAAACAATTTATTT
TCCCAATCACGATCTGGAGGAAAAGGTCTTTCACGAAGCTGGATGGTATC
TCGCCAACGAATACATAAGCGAGCTACGAGGCCTTGAGGAGGTTGCAATT
GAGAATCCCCAGGAGCCTAAAGCGACTGGTTATCAACTGGTCCGTGAAAG
CGGCATGCCTATCGTTCCCCTAATGGGGAATAGTCACCACATGGCTGCCG
GAATCTGCGATGTCTTCAAGGAAGCTTGCCCGCTGCAAGCATATGACCCA
GAAGAGATCGATCTCGACCATCTACAGGAAAAGGACACTGTTGTGCTTGT
GGCAGCTGTCGCGGATAGTGCCGAAACCATCACGCGTTTCGTCAACCACA
TCCACGGAGTGAAACCATGCCTTCCTATCTTGGTTGTGGCTGGAGTGCTT
CAAGCTGAGCTAGTCGCACCTGGTGGTCCGCTGCCGTCTCTCATTCAAGG
CGGCCCCATCACGGTGGTTGCACTTAGTCTGGCAAAAGGCAAGGACATGA
CTACTGAGAACTACATTTATGATACCGCGCGTATTTCCTGAATGTCAGTG
AATCCATCTGACCCACGCAGGCAGAACTTGATAGGCATCTTTGGCCTTCC
CGGATCTGGGAAGACCTATCTTCTCAATCAACTCAGAAGGGAGCTCGAAG
GGGGCCCTTTTTCATTCTATGAGTTTGAGGAGGTCGGCCAAACCAGGCCT
TCTAACTGGTTTGTCAATGATAGGGCCTTTGAATCTATCAGGCATGAATG
CGATCAATCAGGGGTCGCAGGAATTGCCACAGCTAATTACATGCTACCGG
ACGAGGACGGCTATCTTCCATGCGAGATAATTCTTGATGATGGCTGTCCT
AATGGGCCGTTCACGCATATTATATATTTGAACACCCCTGTCGAGGTGGT
CCATCGCCGTTGCATGGACGACGCTGAAAAGGAACTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001011-T1.utr3p1 | KJC3_001011-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001011-T1.utr5p1 | KJC3_001011-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR036412 |
| DBxref | InterPro:IPR029057 |
| DBxref | InterPro:IPR023214 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:2570455..2573141 - |
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