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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:2634745..2637119- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001039-T2 ID=KJC3_001039-T2|Name=KJC3_001039-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2375bp|location=Sequence derived from alignment at ch1:2634745..2637119- (Aspergillus niger KJC3)
CTAATCTTCCCTTTCCCTCTCGCCCCCCTCCCACTCTCGGTCTGTCTTCC
CAGCACTTCCCGTCACAAGTCGCTGCTTACGAGATCACTGCCCTCTCATA
ACTAATCTGCCCACACCCACTTTCCCCCCCGGTTATCGCCAATAATAGTC
AGCAGTCAAACTGCAATCCAGCTTAGTTAGTCAGTTAAGGCCTCCGCGTG
AGCAGCCTTTCCCAAATCTCCCCTGCCTAGCGAAAACGAGCTATCTCCGA
ACTGGTGCTCGCGCTCTCGTCTCTGCTTACCTCATCGTCCTTCCCCCGTT
TATCCTACATCGTTTCTCTACATCCTCGCCTCCCCCCTCGAAACCCCCAA
AGAAAACGTGCGAATAGACTGGCCGAGCTCGTCGTCCGCCCTTCTGCCCT
TCGTGAATTGGTCCTGTCGTGTCTTTTTTCCGGCGCGTCTCCGTTGTCTT
TTGACCTGTTGCCTCGATGCAGCCCACACTAGCCCCAGCGCCGCATCCAA
GTATGCAAACGTCTGCTCAGGTAAGCAGCCTATGCTTGTCGCGGTTTGTC
ATCAGATCGCGTCTGTCCCATCCTGTCTTTCCCCGTTTCCCCAGATTCGC
GCAGCTCATGACCCGAGCCGGGAGCTTGAGCTTTCTGGTCGTGTTCGCGA
CTGCTGTCGCCCTGTCTGTCGGATGAGCGATGCCGGATCACACCCATGTT
TTCGCGACACGGGGGCCTTGACATGCTCACCGGTCGCGTCAATCCGGTGT
AGATGAATCACCAAGTATATAGATGCTAACTGTGGAGTTTCTTACTAGGA
CCATGCGGATCAGGGTAAGTGAGAACAGCCTCTCATCGCGAAGAAAAGGG
GAGAAAAAGAGATGAGCAGGAGGAAAATTGCCCCAGCAGTCATCGCGTCA
TCGCGTTTGCGGGTTGCTTACTGCCTCACTCCACTTCCCTGGCCTCGTAT
GTGTTTACACCGAATGCTGACTCGCGTCTGTAATCTCCAGTGCTGCATGA
CCAGCTCCTAGCTGCTCATCAACATCTGTCGCACCCACAGCAGGCACGTC
CGCAAGGTCCGACCGCGCAGCCTCCGCATATGCAACCCAACACCACTAGT
CCTCGAGACCAGAACAACATCGACCCTGCCATCTCCGGCGCTGCCATGCT
CAGTGGTCCTCCCCAAACTCCTCCCCAGCCAGAGCCTACGGGCCAGGAAT
CCCCAAAGACTTATGGCAAGCGACCGCTGTCGACTTCCAAGCGCGCTGCC
CAGAACCGCGCCGCACAGGTATAGTGAACTCTAATGCCTGCGGATCAAGA
GCTTGAACTGACCAGATCCAGAGAGCTTTCCGTCAACGCAAGGAGAGCTA
TATTCGCAAGCTGGAGGAGCAAGTGAAGGAGTTTGATAACACAAACGAGA
CCATGAAGCAGCTGCAAGCTGAGAACTACCAGCTCCGTGAATATATCATC
AACCTGCAATCGCGCCTGTTGGACTCCCAGGGCGAGGTTCCCGAGCTTCC
CGGCAACATTGACCTGAACCAGCCACGGAATGACATCTCTGTTCCCCCGC
CGGGGGCTCCGGCGGCCACCGGTCCCGCGCCAGGTCCTGGTGGTGCTCCG
CAGCAAATGCAGGTCCCCAACCCCGGTGCTGCCACGAACGAAGACATGAA
CTCGCTGAATCGCATCGCGGTTGCTGGCCTGGGAATGCGCAAGCACCCCA
ATGAGGAAGCGAACTTCCTGGGGAACAACTTCCAGGCTCGCCGCCCGCGC
AACGACGACGGGCAGCCCGATGGGTCTGAAGCAACGAAAACGGAGCCTGG
TCACGGGTTGCCCGTTGTATCATGAGTGAATCAGATGTATCCGAACTCGA
TATTACCCCTGATTGTTGTCGCCATTCCTGTATTCTGTTGATTGCGAACG
CCCGAGATATATCATCAGCTCCTTGCTTTTCTGTTTCGATATTCCTACCG
TTGTCGTATCTTCTGGTGTATGGCGTGATGTAACTAGGTATCCATTCTGG
CCTCGGAAGGAGCGGTGTTTTGTGCTTTTCATATTTGATGTCCATCCACA
GCGTCAGCCACAGGAGTCTCCTGGGAAAGAAGAGGTGTTACCATTGTTGT
TAATGCTCCTGGTGATTCTTTTCCCGTCTGCCGGTTGCTCGATGCATTGG
CAGTGGGCGGAGGAGGCTTCTGGTATTTCCTCGTTCAACACTTGCATATG
ATGTTTGTTAGAGAGGGCCTTCCTGTGCCTCCGACGAGGACAAGGGGTCC
AGGAAACAGACTGCTCGACTTGCTTATAGTAATCCATCTGTGTCTGCTCC
TATGCACATGCTGCTCTCTTTATCGTCCTTATGTGACAGTCAAAGACATA
ACCGAATTATCATCATATTCCGAAC back to topCoding sequence (CDS) from alignment at ch1:2634745..2637119- >KJC3_001039-T2 ID=KJC3_001039-T2|Name=KJC3_001039-T2|organism=Aspergillus niger KJC3|type=CDS|length=1386bp|location=Sequence derived from alignment at ch1:2634745..2637119- (Aspergillus niger KJC3)
AGAGCTTTCCGTCAACGCAAGGAGAGCTATATTCGCAAGCTGGAGGAGCA
AGTGAAGGAGTTTGATAACACAAACGAGACCATGAAGCAGCTGCAAGCTG
AGAACTACCAGCTCCGTGAATATATCATCAACCTGCAATCGCGCCTGTTG
GACTCCCAGGGCGAGGTTCCCGAGCTTCCCGGCAACATTGACCTGAACCA
GCCACGGAATGACATCTCTGTTCCCCCGCCGGGGGCTCCGGCGGCCACCG
GTCCCGCGCCAGGTCCTGGTGGTGCTCCGCAGCAAATGCAGGTCCCCAAC
CCCGGTGCTGCCACGAACGAAGACATGAACTCGCTGAATCGCATCGCGGT
TGCTGGCCTGGGAATGCGCAAGCACCCCAATGAGGAAGCGAACTTCCTGG
GGAACAACTTCCAGGCTCGCCGCCCGCGCAACGACGACGGGCAGCCCGAT
GGGTCTGAAGCAACGAAAACGGAGCCTGGTCACGGGTTGCCCGTTGTATC
ATGAATGCAACCCAACACCACTAGTCCTCGAGACCAGAACAACATCGACC
CTGCCATCTCCGGCGCTGCCATGCTCAGTGGTCCTCCCCAAACTCCTCCC
CAGCCAGAGCCTACGGGCCAGGAATCCCCAAAGACTTATGGCAAGCGACC
GCTGTCGACTTCCAAGCGCGCTGCCCAGAACCGCGCCGCACAGAGAGCTT
TCCGTCAACGCAAGGAGAGCTATATTCGCAAGCTGGAGGAGCAAGTGAAG
GAGTTTGATAACACAAACGAGACCATGAAGCAGCTGCAAGCTGAGAACTA
CCAGCTCCGTGAATATATCATCAACCTGCAATCGCGCCTGTTGGACTCCC
AGGGCGAGGTTCCCGAGCTTCCCGGCAACATTGACCTGAACCAGCCACGG
AATGACATCTCTGTTCCCCCGCCGGGGGCTCCGGCGGCCACCGGTCCCGC
GCCAGGTCCTGGTGGTGCTCCGCAGCAAATGCAGGTCCCCAACCCCGGTG
CTGCCACGAACGAAGACATGAACTCGCTGAATCGCATCGCGGTTGCTGGC
CTGGGAATGCGCAAGCACCCCAATGAGGAAGCGAACTTCCTGGGGAACAA
CTTCCAGGCTCGCCGCCCGCGCAACGACGACGGGCAGCCCGATGGGTCTG
AAGCAACGAAAACGGAGCCTGGTCACGGGTTGCCCGTTGTATCATGAATG
CAACCCAACACCACTAGTCCTCGAGACCAGAACAACATCGACCCTGCCAT
CTCCGGCGCTGCCATGCTCAGTGGTCCTCCCCAAACTCCTCCCCAGCCAG
AGCCTACGGGCCAGGAATCCCCAAAGACTTATGGCAAGCGACCGCTGTCG
ACTTCCAAGCGCGCTGCCCAGAACCGCGCCGCACAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | DNA-binding transcription factor activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001039-T2.utr3p1 | KJC3_001039-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR004827 |
| DBxref | PFAM:PF00170 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:2634745..2637119 - |
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