You are here

Home

KJC3_001072-T1, KJC3_001072-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001072-T1
Unique NameKJC3_001072-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:2720336..2722228-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001072-T1 ID=KJC3_001072-T1|Name=KJC3_001072-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1893bp|location=Sequence derived from alignment at ch1:2720336..2722228- (Aspergillus niger KJC3)
AGAGAATCGATAACCGTTTGCATTGATCGCCCATATGGAAGATAAAGTGA
AGAGAGAGACCGGCAATGGCAAGGCAAAGTGTGGAGGAAAGCAGTACCGG
ATAAGAAAACAGCCGCTCTCCACCACCCACGGTGGGGATTTGTGTGGAGA
AAGCGTGGGGAGTGACGCCACGGGGAAAAGAATCCCAAGAAGTACGGAAA
GCAGATGCCGATCGCAGTCTCACTACACGTTCAGCTATAATAACTACGCG
GCGCTGCCTGCTTCCTATTACCCCTCCCCCTCATTGTCTCTCTTTTCTCA
TTCTCCCCGTTGTCTCCTCCCTGCAACACTGGCTGACTCCCTCTCTGCCT
TGTTGCAATTCGCCCATCATGTCCCACTCCGCCGCTGAACTGCAAAAGCC
CACGGGCGAGTACCGCCAATACTTGCCCGACCTGAGTTTGAAGCGCTTCC
AGGTGATGCGCAATCAGGATGCCCATGAATACGCCCATGATTTCAAGACA
CTGAAGAACCCTCCGTGGCTGCATGCGCTGTACATGCACTGGGTTGATCT
GCTGCAGGAACCCTTCAAGGGTGTGACCACTGATGGTATGTTCTTTTTCC
CGATGAACCCACCCCGCACCGCCATTTTGGAAGGCCAATGCTGATCAATT
CTTAAAGGAAACGTTCGCCCTGGCTTGTTCACGCTCCAAGATGAAGGTGT
GCCTGTTGGCGACATCGTTGATTCCGTCCAGAATGTCCTATCCCTTGCCG
ACGACAAGCAGCGCCAGGCGCTGTCCTACCACATTGACTCCCCCGAATGG
CGGACCTGGTCCAACCCCGAATTTCTTCTAGCTCACAAGGGTCTGCGCCT
CGACGAGATTGACAACAAGCTGCGCGATGCCATCATGAATGTCCTGAAGA
CCTCCCTGTCGCCTGAGGGCTACGACAAGGCAGTCAAGGCGATGCGCATC
AACCACTTCCTCGGCGAACTCGTGGAATCTCCCAAGGTGATGAACGAGTT
CTCCTACAACTTTGTCCTTTTCGGTCGTCCCTCGACCACTCGGCCATGGG
GCTGGTCCTTTTATGGCCACCACCTTTGCCTCAACATTTTCCTGTACAAG
AACCAGATTGTCGCCTCCCCGTGGTTCACCGGCGCCGAGCCCAATGAGAT
TGACGATGGCCCGTACTCGGGTACCCGTATCATGCAGGTCGAAGAAGAGC
TTGGCCTCCGCCTGATGCAATCCTTGACCCCTGACCTTCAGCAAAAGGCC
CGCGTATTCGCAGAGATGCACGATCCCGCCATGCCCCCGGGCCGCTGGAA
CCGCGATGACCAGCGCCACCTGTGCGGAGCTTACCGGGACAACCGTGTCG
TCCCTAACGAGGGTATCACCGTCGACGGATTCACGGAGGAACAGAAGAAA
TACATGTACGGCATCTTCGAGCAATACCTGTTGTACCTCCCTGCTCGGGC
CCGTCAGATGAAGCTGGACCAGATTCGCCAATATGAGTCGGAGACTTACT
TCTGCTGGATTGGTGGCTATGGCGACAGCGACCCCTTCTACTACCGCCTC
CAGAGCCCCGTGGTTCTGATCGAATTCGACCACCACTCCGGTGTCTTCCT
CAACAACGAGGAGCCGAAGAAGTTCCACATCCACACTTTGTTGCGTACGC
CGAATGCCGGAGATTACGGTCAGGCTCTGCGTGCCCAGATCCCCGCCGTG
GAGGGACTTAATGGGAAGGAGATCGTGTGGGAGAAGTCCGCTCTGTGATG
CCGGACACGTGTCAATATATGATGATGTTATGTGAATAGAGTGTTATATA
GCGTACATACATATGGAATCCATGATATCCTCCAGGATGGCTATGAAGCT
GTGGCCATCCTGACAAACCAATTCTTGAGCAGTAAAATCTAGA
back to top

Coding sequence (CDS) from alignment at ch1:2720336..2722228-

>KJC3_001072-T1 ID=KJC3_001072-T1|Name=KJC3_001072-T1|organism=Aspergillus niger KJC3|type=CDS|length=2616bp|location=Sequence derived from alignment at ch1:2720336..2722228- (Aspergillus niger KJC3)
GAAACGTTCGCCCTGGCTTGTTCACGCTCCAAGATGAAGGTGTGCCTGTT
GGCGACATCGTTGATTCCGTCCAGAATGTCCTATCCCTTGCCGACGACAA
GCAGCGCCAGGCGCTGTCCTACCACATTGACTCCCCCGAATGGCGGACCT
GGTCCAACCCCGAATTTCTTCTAGCTCACAAGGGTCTGCGCCTCGACGAG
ATTGACAACAAGCTGCGCGATGCCATCATGAATGTCCTGAAGACCTCCCT
GTCGCCTGAGGGCTACGACAAGGCAGTCAAGGCGATGCGCATCAACCACT
TCCTCGGCGAACTCGTGGAATCTCCCAAGGTGATGAACGAGTTCTCCTAC
AACTTTGTCCTTTTCGGTCGTCCCTCGACCACTCGGCCATGGGGCTGGTC
CTTTTATGGCCACCACCTTTGCCTCAACATTTTCCTGTACAAGAACCAGA
TTGTCGCCTCCCCGTGGTTCACCGGCGCCGAGCCCAATGAGATTGACGAT
GGCCCGTACTCGGGTACCCGTATCATGCAGGTCGAAGAAGAGCTTGGCCT
CCGCCTGATGCAATCCTTGACCCCTGACCTTCAGCAAAAGGCCCGCGTAT
TCGCAGAGATGCACGATCCCGCCATGCCCCCGGGCCGCTGGAACCGCGAT
GACCAGCGCCACCTGTGCGGAGCTTACCGGGACAACCGTGTCGTCCCTAA
CGAGGGTATCACCGTCGACGGATTCACGGAGGAACAGAAGAAATACATGT
ACGGCATCTTCGAGCAATACCTGTTGTACCTCCCTGCTCGGGCCCGTCAG
ATGAAGCTGGACCAGATTCGCCAATATGAGTCGGAGACTTACTTCTGCTG
GATTGGTGGCTATGGCGACAGCGACCCCTTCTACTACCGCCTCCAGAGCC
CCGTGGTTCTGATCGAATTCGACCACCACTCCGGTGTCTTCCTCAACAAC
GAGGAGCCGAAGAAGTTCCACATCCACACTTTGTTGCGTACGCCGAATGC
CGGAGATTACGGTCAGGCTCTGCGTGCCCAGATCCCCGCCGTGGAGGGAC
TTAATGGGAAGGAGATCGTGTGGGAGAAGTCCGCTCTGTGAATGTCCCAC
TCCGCCGCTGAACTGCAAAAGCCCACGGGCGAGTACCGCCAATACTTGCC
CGACCTGAGTTTGAAGCGCTTCCAGGTGATGCGCAATCAGGATGCCCATG
AATACGCCCATGATTTCAAGACACTGAAGAACCCTCCGTGGCTGCATGCG
CTGTACATGCACTGGGTTGATCTGCTGCAGGAACCCTTCAAGGGTGTGAC
CACTGATGGAAACGTTCGCCCTGGCTTGTTCACGCTCCAAGATGAAGGTG
TGCCTGTTGGCGACATCGTTGATTCCGTCCAGAATGTCCTATCCCTTGCC
GACGACAAGCAGCGCCAGGCGCTGTCCTACCACATTGACTCCCCCGAATG
GCGGACCTGGTCCAACCCCGAATTTCTTCTAGCTCACAAGGGTCTGCGCC
TCGACGAGATTGACAACAAGCTGCGCGATGCCATCATGAATGTCCTGAAG
ACCTCCCTGTCGCCTGAGGGCTACGACAAGGCAGTCAAGGCGATGCGCAT
CAACCACTTCCTCGGCGAACTCGTGGAATCTCCCAAGGTGATGAACGAGT
TCTCCTACAACTTTGTCCTTTTCGGTCGTCCCTCGACCACTCGGCCATGG
GGCTGGTCCTTTTATGGCCACCACCTTTGCCTCAACATTTTCCTGTACAA
GAACCAGATTGTCGCCTCCCCGTGGTTCACCGGCGCCGAGCCCAATGAGA
TTGACGATGGCCCGTACTCGGGTACCCGTATCATGCAGGTCGAAGAAGAG
CTTGGCCTCCGCCTGATGCAATCCTTGACCCCTGACCTTCAGCAAAAGGC
CCGCGTATTCGCAGAGATGCACGATCCCGCCATGCCCCCGGGCCGCTGGA
ACCGCGATGACCAGCGCCACCTGTGCGGAGCTTACCGGGACAACCGTGTC
GTCCCTAACGAGGGTATCACCGTCGACGGATTCACGGAGGAACAGAAGAA
ATACATGTACGGCATCTTCGAGCAATACCTGTTGTACCTCCCTGCTCGGG
CCCGTCAGATGAAGCTGGACCAGATTCGCCAATATGAGTCGGAGACTTAC
TTCTGCTGGATTGGTGGCTATGGCGACAGCGACCCCTTCTACTACCGCCT
CCAGAGCCCCGTGGTTCTGATCGAATTCGACCACCACTCCGGTGTCTTCC
TCAACAACGAGGAGCCGAAGAAGTTCCACATCCACACTTTGTTGCGTACG
CCGAATGCCGGAGATTACGGTCAGGCTCTGCGTGCCCAGATCCCCGCCGT
GGAGGGACTTAATGGGAAGGAGATCGTGTGGGAGAAGTCCGCTCTGTGAA
TGTCCCACTCCGCCGCTGAACTGCAAAAGCCCACGGGCGAGTACCGCCAA
TACTTGCCCGACCTGAGTTTGAAGCGCTTCCAGGTGATGCGCAATCAGGA
TGCCCATGAATACGCCCATGATTTCAAGACACTGAAGAACCCTCCGTGGC
TGCATGCGCTGTACATGCACTGGGTTGATCTGCTGCAGGAACCCTTCAAG
GGTGTGACCACTGATG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001072KJC3_001072Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001072-T1KJC3_001072-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001072-T1.cdsKJC3_001072-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001072-T1.utr3p1KJC3_001072-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001072-T1.exon2KJC3_001072-T1.exon2Aspergillus niger KJC3exon
KJC3_001072-T1.exon1KJC3_001072-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001072-T1.utr5p1KJC3_001072-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR021889
DBxrefPFAM:PF12006
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:2720336..2722228 -
Powered by Drupal