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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:2739161..2740540- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001078-T1 ID=KJC3_001078-T1|Name=KJC3_001078-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1380bp|location=Sequence derived from alignment at ch1:2739161..2740540- (Aspergillus niger KJC3)
ACCACTTCTCCCTGCCAGTTCTGACCAAATACCCTCCTCTTTTCCATCTA
ATTAATTCTGCAAAACCTCAGTTTGTTAGACACATAGGATATGGCCGGCC
GACAAAGAATCATGCGCGCAGCATCACTGTACAGCCTGCCATCAATTTCC
CGACCCAACCGCTCCGCCGCAACATCAGCTCGCCTCTTCTCATGCACATC
CCTCCGCTCCAACCGCTCGCGCATACCCCTGGACATCCCTCCTCCATTCC
CCATTACCAAGACATGTCCCGAACCGAGCTGCTCATGTCCCTCGACACCG
TCCATGCCCGCCCCGATCGACTATGACCAGCCGCTAAACGGAACAATGGC
GGCCTACGCGCAGCAGCTTCTCATCTGCACCGGACAACGAGACTGGACAA
GTCGCATAGAAGAGGACGGTCAGGGCCAGAACTGGGGTGAGCTGGTTCGA
GGATTGAAAAGCCTTCTCGGGCGTGGGGGGAAATATGCCGACGTAAGACA
TACTTCCTCATTCGGGTCGCAACATCCCACTGACAATTGCTACTATAGCC
CTTCAACAATATCCTAGTCACCAACGCCTCCTTCCTCCCCTCCTCCTCCT
CCTCCTCCTCATCATCAACCAGCACATCTACCTCGCAGACCGCATCCGCC
TTTCTCTTCCCCAGCTTCAAATACTTCCCCTCCGTCCCCGTTAATCTCCC
CGATTCCGCCCCCGCAACAACCGATCTCTCGACCTTCGTCCGCGCGTTCC
TCCTCCCTATCGAATCGAGACATGGCGGGCAGATCCGCGACCAGGCTCTG
GCGGCTGAATTCCCAGATGCTGTTGATCTGCAACACTCCCCCGTTGTGTT
GATCTGCGGCCACGGTGGTCGCGACATGCGATGTGGTGTAATGGCGCCGG
TTCTGGAGACCGAGTTTCAACGGGTGTTGCAGTCTAAGGGGTACACATCC
GCGGGAAGTGACAATAGTGTCGTCGACAGCCCCGAGCATGCTCACATCGG
GTTAATCAGCCACGTTGGAGGACACAAGTATGCTGGAAACGTCATCGTTT
ACATCCCTCCCGGAATGAAGGAAGCTGGCTCTTCCTCGCCGCATCCATTG
GCGGGCAAGGGTATTTGGTATGGACGTATTGAGCCCAAGCATGTGCAGGG
TGTGGTGGAGGAGACGATTCTGGGTGGAAAGGTCATTACGGACCATTTCC
GTGGGGCGGTTGATCGGGAGAGTGGGGTGTTAAGGTTGTAGACTTGGTGT
TAAAATATAGTAGTGTATAGTAGAAAATAGATTCCTTGGTCATGGCAGTA
GTATGGTTCTGGAGGGATTATATATGGACTATCGTTGAAGACTAGATAGA
TCATGCAATAATGAGGCGCTGTGATGAAAC back to topCoding sequence (CDS) from alignment at ch1:2739161..2740540- >KJC3_001078-T1 ID=KJC3_001078-T1|Name=KJC3_001078-T1|organism=Aspergillus niger KJC3|type=CDS|length=2190bp|location=Sequence derived from alignment at ch1:2739161..2740540- (Aspergillus niger KJC3)
CCCTTCAACAATATCCTAGTCACCAACGCCTCCTTCCTCCCCTCCTCCTC
CTCCTCCTCCTCATCATCAACCAGCACATCTACCTCGCAGACCGCATCCG
CCTTTCTCTTCCCCAGCTTCAAATACTTCCCCTCCGTCCCCGTTAATCTC
CCCGATTCCGCCCCCGCAACAACCGATCTCTCGACCTTCGTCCGCGCGTT
CCTCCTCCCTATCGAATCGAGACATGGCGGGCAGATCCGCGACCAGGCTC
TGGCGGCTGAATTCCCAGATGCTGTTGATCTGCAACACTCCCCCGTTGTG
TTGATCTGCGGCCACGGTGGTCGCGACATGCGATGTGGTGTAATGGCGCC
GGTTCTGGAGACCGAGTTTCAACGGGTGTTGCAGTCTAAGGGGTACACAT
CCGCGGGAAGTGACAATAGTGTCGTCGACAGCCCCGAGCATGCTCACATC
GGGTTAATCAGCCACGTTGGAGGACACAAGTATGCTGGAAACGTCATCGT
TTACATCCCTCCCGGAATGAAGGAAGCTGGCTCTTCCTCGCCGCATCCAT
TGGCGGGCAAGGGTATTTGGTATGGACGTATTGAGCCCAAGCATGTGCAG
GGTGTGGTGGAGGAGACGATTCTGGGTGGAAAGGTCATTACGGACCATTT
CCGTGGGGCGGTTGATCGGGAGAGTGGGGTGTTAAGGTTGTAGATGGCCG
GCCGACAAAGAATCATGCGCGCAGCATCACTGTACAGCCTGCCATCAATT
TCCCGACCCAACCGCTCCGCCGCAACATCAGCTCGCCTCTTCTCATGCAC
ATCCCTCCGCTCCAACCGCTCGCGCATACCCCTGGACATCCCTCCTCCAT
TCCCCATTACCAAGACATGTCCCGAACCGAGCTGCTCATGTCCCTCGACA
CCGTCCATGCCCGCCCCGATCGACTATGACCAGCCGCTAAACGGAACAAT
GGCGGCCTACGCGCAGCAGCTTCTCATCTGCACCGGACAACGAGACTGGA
CAAGTCGCATAGAAGAGGACGGTCAGGGCCAGAACTGGGGTGAGCTGGTT
CGAGGATTGAAAAGCCTTCTCGGGCGTGGGGGGAAATATGCCGACCCCTT
CAACAATATCCTAGTCACCAACGCCTCCTTCCTCCCCTCCTCCTCCTCCT
CCTCCTCATCATCAACCAGCACATCTACCTCGCAGACCGCATCCGCCTTT
CTCTTCCCCAGCTTCAAATACTTCCCCTCCGTCCCCGTTAATCTCCCCGA
TTCCGCCCCCGCAACAACCGATCTCTCGACCTTCGTCCGCGCGTTCCTCC
TCCCTATCGAATCGAGACATGGCGGGCAGATCCGCGACCAGGCTCTGGCG
GCTGAATTCCCAGATGCTGTTGATCTGCAACACTCCCCCGTTGTGTTGAT
CTGCGGCCACGGTGGTCGCGACATGCGATGTGGTGTAATGGCGCCGGTTC
TGGAGACCGAGTTTCAACGGGTGTTGCAGTCTAAGGGGTACACATCCGCG
GGAAGTGACAATAGTGTCGTCGACAGCCCCGAGCATGCTCACATCGGGTT
AATCAGCCACGTTGGAGGACACAAGTATGCTGGAAACGTCATCGTTTACA
TCCCTCCCGGAATGAAGGAAGCTGGCTCTTCCTCGCCGCATCCATTGGCG
GGCAAGGGTATTTGGTATGGACGTATTGAGCCCAAGCATGTGCAGGGTGT
GGTGGAGGAGACGATTCTGGGTGGAAAGGTCATTACGGACCATTTCCGTG
GGGCGGTTGATCGGGAGAGTGGGGTGTTAAGGTTGTAGATGGCCGGCCGA
CAAAGAATCATGCGCGCAGCATCACTGTACAGCCTGCCATCAATTTCCCG
ACCCAACCGCTCCGCCGCAACATCAGCTCGCCTCTTCTCATGCACATCCC
TCCGCTCCAACCGCTCGCGCATACCCCTGGACATCCCTCCTCCATTCCCC
ATTACCAAGACATGTCCCGAACCGAGCTGCTCATGTCCCTCGACACCGTC
CATGCCCGCCCCGATCGACTATGACCAGCCGCTAAACGGAACAATGGCGG
CCTACGCGCAGCAGCTTCTCATCTGCACCGGACAACGAGACTGGACAAGT
CGCATAGAAGAGGACGGTCAGGGCCAGAACTGGGGTGAGCTGGTTCGAGG
ATTGAAAAGCCTTCTCGGGCGTGGGGGGAAATATGCCGAC back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001078-T1.utr3p1 | KJC3_001078-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001078-T1.utr5p1 | KJC3_001078-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036249 |
| DBxref | InterPro:IPR009737 |
| DBxref | PFAM:PF06999 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:2739161..2740540 - |
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