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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:2916496..2919346- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001145-T1 ID=KJC3_001145-T1|Name=KJC3_001145-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2851bp|location=Sequence derived from alignment at ch1:2916496..2919346- (Aspergillus niger KJC3) CCACCGCTCGGCAGGGGAACCTCATTTCCTTTCAATAACCACAAGGCTTC
AACTGTATCTACCCTCCAGCATTGGGCCCGGCAATCACCCGGGCTGGCCT
AACTTATCTCTTTAGAAATCCGAACAAAATCCATTTAGATCACAAACTAT
ATTGCAATTTAGCATGCATGACAGACCCTTATTTAAGAGCTTATGCTCCG
ATTGAGAGTATCCGCCCAATCCCCTGATCAGTGCTACGGGCCATCGGCTT
AGTCTTGACTTCGGGCGTTTCAGATTGAAATTCCCACCCCTGTTGGGGTA
GGCGAGAGGGAATTCCCAGCAATCCCTATGGAAGCTCGAAATTTTCTGCT
TGGCAACTGGTAAAAGATTCTTGCGCTTTGATTAAGCAATATTAACTGAG
TCGTCAGCTATCAATTAGATTCATCAAAAGGACTCTTGCATCTTCCGCTT
ACTATACTCTCTCAAGGCCTGCCTGATGGTCTGATCAGGAGTGAACTGCC
CAGTATATATGCCCCCTTGAGCCCTTCAATCCACTTGAGTCGATAGGCGG
GGCTAATGCCCCATTCAAATTATCTAAGACAAACGCCCTAAGCATGGAAC
AAGTCTCAACCGGGAGATAGCGCATCGATCCCGCTCTTTCGATGTTTTGG
ATTGCGCCGCTACTTCCTCATCCAGGCAAATTGTTTTGTGGGTTCCAGCA
ATAGTATCGATAGCTTCATCTAGTTCACTCTGGTCGTGTCAGAGGTTTCC
GGTATGGCACCGGCAAAACGTTCTAGAAATAGAAAAGATGACAGCGGGAA
ATAGACTACTGTCAGAGGAGCGCTTGAATAGCTTTTCCCTATAAAGAGAG
CGCCTAGGAACCCCTGCCGTGGGCATGATTCGTTAGATATCTCAATGTTC
ATTCTTTAGGGGTGCTTAGACTCACTTCCTTTCACTCTTTTTTTATTTTG
TAAACCCCCACATTCCTTTCTTTCCTTCAAGCTCGACGAAGCATCATGCT
TCTCGACAAGCTCTCTGTTCTCTCTTTCCTGGGCCTGGCGCCCATCTTTG
CTGCTGCGCAGCTCTCCGGTTCCGTGGGACCGCTGACATCCGCGTCCACC
AAGGCAGCTACCAAGACTTGCAACGTTTTGGACTACGGTGCTAAGGCGGA
TAAGTCTACTGATCTGGGCGCGCCGTTGGCATCTGCCTTCGCTGACTGCA
AGTCTGGCGGTCTCGTCTATGTCCCCTCTGGTGACTATGCTCTCTCCACT
TGGGCGAGGTTGAGCGGTGGTGAGGCATGGGCTCTGCAGATCGATGGAAT
CATCTACCGTACTGGCACGGACGGCGGCAACATGATCTATATCGAGCACT
CTAGCGACTTCGAACTTTTCAGTAGCACCTCCGAAGGTGCCATGCAGGGT
CTGGGCTACGAGTTCCATGCCGATGATAACTGGAGCGGCCCTCGTCTGCT
GCGACTCTATGAAGTTACTGACTTCTCGGTCCACGATTTCATCCTGGTTG
ACTCTCCCTCTTTCCACTTCTCTCTCGACACTTGCACCAATGGCGAAATC
TACAACATGGCAATCCGCGGCGGTAACCATGGTGGTCTGGATGGTATTGA
TGTCTGGAGTAACAACATCTGGGTCCACGATGTGAGTACCGAAGAGCATA
ACGTTTCCATACAGGTTATTAATTAGTCCGATAGGTCGAGGTGACGAACA
AGGACGAGTGTGTCACAGTCAAGGTAAGACCCTGATGAGTGCCCGAGCAG
GAAGCTTCAGGCTAACAATCAATAATAGAGCCCATCGAAGAACATCCTCA
TTGAGAGCATCTACTGCAACTGGAGTGGTGGCTGTGGTATGGGCTCGTTT
GGCTCTGATACCAATGTTAGCGACATCACTTACCGCAACATCTACACCTG
GAGCTCGAACAACATGATGTTGATCAAGAGCAACGGAGGTAGCGGCTTCG
TCGAGAATGTCCTCCTCGAGAACTTCATTGGTGAGTGATATCTTATGCAA
AATTATTGGTCTTGACGGGACTAACCGAGGACTCTTTCTGTTGGTAAACA
GGACACGGCAACGCTTACTCTCTGGATATCGACAGCTACTGGGCCAGTAT
GAGCGCGGTGGACGGCGATGGTGTCCAGCTGAGCAACATCACCGTGAAGA
ACTGGAAGGGAACCGAAGCTTACGGTGCTGAGCGTGGTCCTGTCAAGGTG
GTCTGTGCTGATGGTGCCCCTTGCTACGACATTACCATTGAGGACTTCGC
CATGTGGACCGAGGAGGGTGATAGTCAGTGGTACTCTTGTGAGAGTGCTT
ATGGCAGCGGATACTGCCTTCAGGACAGCGATGACCACGTCTCTTACTCG
GTCACCACTTCTACAGTCAGCTCCGCTCCCTCGGGCTACTCTGCGACCTC
CATGGCCGCCGATCTGACCACTGACTTCGGCTCTACTGTCTCTATCCCCA
TCCCGACCATCCCTACCTCTTTCTACCCGGGTGCCACCCCCTACAGTGCT
CTGATGGCCAACAGCGCTTCTACTGCCGCTGCTTCTTCCATTGCCAGCCA
TGCCACTGTCCATAGCAGCAGCGCTTCCGTTGCTGCTTCTGTGCCCAGCG
CTGTCGCCCCTAGCGAGAGCATCCCCGCCGCCACTTCCGCCGTGGTATCC
AGCGCTGCTGCCATTGCCCCCAGCCCCGCTGTGGGTGCCCAGGAGGGGTC
TACCACCTCCGCTCCCAGCTTTGCTGCCCCCAGTGGTGCTGGAAACTCTC
CCCAGGGTCCCACCGGAGCTTCTGGATTCGGCGAAAAGGGCCAGCAGGGT
GAGCAGGGTGAACAGGGCGAACAGGGCGAGCAGGGTGTCTGCTACGTGTA
A back to topCoding sequence (CDS) from alignment at ch1:2916496..2919346- >KJC3_001145-T1 ID=KJC3_001145-T1|Name=KJC3_001145-T1|organism=Aspergillus niger KJC3|type=CDS|length=6708bp|location=Sequence derived from alignment at ch1:2916496..2919346- (Aspergillus niger KJC3) GACACGGCAACGCTTACTCTCTGGATATCGACAGCTACTGGGCCAGTATG AGCGCGGTGGACGGCGATGGTGTCCAGCTGAGCAACATCACCGTGAAGAA CTGGAAGGGAACCGAAGCTTACGGTGCTGAGCGTGGTCCTGTCAAGGTGG TCTGTGCTGATGGTGCCCCTTGCTACGACATTACCATTGAGGACTTCGCC ATGTGGACCGAGGAGGGTGATAGTCAGTGGTACTCTTGTGAGAGTGCTTA TGGCAGCGGATACTGCCTTCAGGACAGCGATGACCACGTCTCTTACTCGG TCACCACTTCTACAGTCAGCTCCGCTCCCTCGGGCTACTCTGCGACCTCC ATGGCCGCCGATCTGACCACTGACTTCGGCTCTACTGTCTCTATCCCCAT CCCGACCATCCCTACCTCTTTCTACCCGGGTGCCACCCCCTACAGTGCTC TGATGGCCAACAGCGCTTCTACTGCCGCTGCTTCTTCCATTGCCAGCCAT GCCACTGTCCATAGCAGCAGCGCTTCCGTTGCTGCTTCTGTGCCCAGCGC TGTCGCCCCTAGCGAGAGCATCCCCGCCGCCACTTCCGCCGTGGTATCCA GCGCTGCTGCCATTGCCCCCAGCCCCGCTGTGGGTGCCCAGGAGGGGTCT ACCACCTCCGCTCCCAGCTTTGCTGCCCCCAGTGGTGCTGGAAACTCTCC CCAGGGTCCCACCGGAGCTTCTGGATTCGGCGAAAAGGGCCAGCAGGGTG AGCAGGGTGAACAGGGCGAACAGGGCGAGCAGGGTGTCTGCTACGTGTAA AGCCCATCGAAGAACATCCTCATTGAGAGCATCTACTGCAACTGGAGTGG TGGCTGTGGTATGGGCTCGTTTGGCTCTGATACCAATGTTAGCGACATCA CTTACCGCAACATCTACACCTGGAGCTCGAACAACATGATGTTGATCAAG AGCAACGGAGGTAGCGGCTTCGTCGAGAATGTCCTCCTCGAGAACTTCAT TGGTCGAGGTGACGAACAAGGACGAGTGTGTCACAGTCAAGATGCTTCTC GACAAGCTCTCTGTTCTCTCTTTCCTGGGCCTGGCGCCCATCTTTGCTGC TGCGCAGCTCTCCGGTTCCGTGGGACCGCTGACATCCGCGTCCACCAAGG CAGCTACCAAGACTTGCAACGTTTTGGACTACGGTGCTAAGGCGGATAAG TCTACTGATCTGGGCGCGCCGTTGGCATCTGCCTTCGCTGACTGCAAGTC TGGCGGTCTCGTCTATGTCCCCTCTGGTGACTATGCTCTCTCCACTTGGG CGAGGTTGAGCGGTGGTGAGGCATGGGCTCTGCAGATCGATGGAATCATC TACCGTACTGGCACGGACGGCGGCAACATGATCTATATCGAGCACTCTAG CGACTTCGAACTTTTCAGTAGCACCTCCGAAGGTGCCATGCAGGGTCTGG GCTACGAGTTCCATGCCGATGATAACTGGAGCGGCCCTCGTCTGCTGCGA CTCTATGAAGTTACTGACTTCTCGGTCCACGATTTCATCCTGGTTGACTC TCCCTCTTTCCACTTCTCTCTCGACACTTGCACCAATGGCGAAATCTACA ACATGGCAATCCGCGGCGGTAACCATGGTGGTCTGGATGGTATTGATGTC TGGAGTAACAACATCTGGGTCCACGATGACACGGCAACGCTTACTCTCTG GATATCGACAGCTACTGGGCCAGTATGAGCGCGGTGGACGGCGATGGTGT CCAGCTGAGCAACATCACCGTGAAGAACTGGAAGGGAACCGAAGCTTACG GTGCTGAGCGTGGTCCTGTCAAGGTGGTCTGTGCTGATGGTGCCCCTTGC TACGACATTACCATTGAGGACTTCGCCATGTGGACCGAGGAGGGTGATAG TCAGTGGTACTCTTGTGAGAGTGCTTATGGCAGCGGATACTGCCTTCAGG ACAGCGATGACCACGTCTCTTACTCGGTCACCACTTCTACAGTCAGCTCC GCTCCCTCGGGCTACTCTGCGACCTCCATGGCCGCCGATCTGACCACTGA CTTCGGCTCTACTGTCTCTATCCCCATCCCGACCATCCCTACCTCTTTCT ACCCGGGTGCCACCCCCTACAGTGCTCTGATGGCCAACAGCGCTTCTACT GCCGCTGCTTCTTCCATTGCCAGCCATGCCACTGTCCATAGCAGCAGCGC TTCCGTTGCTGCTTCTGTGCCCAGCGCTGTCGCCCCTAGCGAGAGCATCC CCGCCGCCACTTCCGCCGTGGTATCCAGCGCTGCTGCCATTGCCCCCAGC CCCGCTGTGGGTGCCCAGGAGGGGTCTACCACCTCCGCTCCCAGCTTTGC TGCCCCCAGTGGTGCTGGAAACTCTCCCCAGGGTCCCACCGGAGCTTCTG GATTCGGCGAAAAGGGCCAGCAGGGTGAGCAGGGTGAACAGGGCGAACAG GGCGAGCAGGGTGTCTGCTACGTGTAAAGCCCATCGAAGAACATCCTCAT TGAGAGCATCTACTGCAACTGGAGTGGTGGCTGTGGTATGGGCTCGTTTG GCTCTGATACCAATGTTAGCGACATCACTTACCGCAACATCTACACCTGG AGCTCGAACAACATGATGTTGATCAAGAGCAACGGAGGTAGCGGCTTCGT CGAGAATGTCCTCCTCGAGAACTTCATTGGTCGAGGTGACGAACAAGGAC GAGTGTGTCACAGTCAAGATGCTTCTCGACAAGCTCTCTGTTCTCTCTTT CCTGGGCCTGGCGCCCATCTTTGCTGCTGCGCAGCTCTCCGGTTCCGTGG GACCGCTGACATCCGCGTCCACCAAGGCAGCTACCAAGACTTGCAACGTT TTGGACTACGGTGCTAAGGCGGATAAGTCTACTGATCTGGGCGCGCCGTT GGCATCTGCCTTCGCTGACTGCAAGTCTGGCGGTCTCGTCTATGTCCCCT CTGGTGACTATGCTCTCTCCACTTGGGCGAGGTTGAGCGGTGGTGAGGCA TGGGCTCTGCAGATCGATGGAATCATCTACCGTACTGGCACGGACGGCGG CAACATGATCTATATCGAGCACTCTAGCGACTTCGAACTTTTCAGTAGCA CCTCCGAAGGTGCCATGCAGGGTCTGGGCTACGAGTTCCATGCCGATGAT AACTGGAGCGGCCCTCGTCTGCTGCGACTCTATGAAGTTACTGACTTCTC GGTCCACGATTTCATCCTGGTTGACTCTCCCTCTTTCCACTTCTCTCTCG ACACTTGCACCAATGGCGAAATCTACAACATGGCAATCCGCGGCGGTAAC CATGGTGGTCTGGATGGTATTGATGTCTGGAGTAACAACATCTGGGTCCA CGATGACACGGCAACGCTTACTCTCTGGATATCGACAGCTACTGGGCCAG TATGAGCGCGGTGGACGGCGATGGTGTCCAGCTGAGCAACATCACCGTGA AGAACTGGAAGGGAACCGAAGCTTACGGTGCTGAGCGTGGTCCTGTCAAG GTGGTCTGTGCTGATGGTGCCCCTTGCTACGACATTACCATTGAGGACTT CGCCATGTGGACCGAGGAGGGTGATAGTCAGTGGTACTCTTGTGAGAGTG CTTATGGCAGCGGATACTGCCTTCAGGACAGCGATGACCACGTCTCTTAC TCGGTCACCACTTCTACAGTCAGCTCCGCTCCCTCGGGCTACTCTGCGAC CTCCATGGCCGCCGATCTGACCACTGACTTCGGCTCTACTGTCTCTATCC CCATCCCGACCATCCCTACCTCTTTCTACCCGGGTGCCACCCCCTACAGT GCTCTGATGGCCAACAGCGCTTCTACTGCCGCTGCTTCTTCCATTGCCAG CCATGCCACTGTCCATAGCAGCAGCGCTTCCGTTGCTGCTTCTGTGCCCA GCGCTGTCGCCCCTAGCGAGAGCATCCCCGCCGCCACTTCCGCCGTGGTA TCCAGCGCTGCTGCCATTGCCCCCAGCCCCGCTGTGGGTGCCCAGGAGGG GTCTACCACCTCCGCTCCCAGCTTTGCTGCCCCCAGTGGTGCTGGAAACT CTCCCCAGGGTCCCACCGGAGCTTCTGGATTCGGCGAAAAGGGCCAGCAG GGTGAGCAGGGTGAACAGGGCGAACAGGGCGAGCAGGGTGTCTGCTACGT GTAAAGCCCATCGAAGAACATCCTCATTGAGAGCATCTACTGCAACTGGA GTGGTGGCTGTGGTATGGGCTCGTTTGGCTCTGATACCAATGTTAGCGAC ATCACTTACCGCAACATCTACACCTGGAGCTCGAACAACATGATGTTGAT CAAGAGCAACGGAGGTAGCGGCTTCGTCGAGAATGTCCTCCTCGAGAACT TCATTGGTCGAGGTGACGAACAAGGACGAGTGTGTCACAGTCAAGATGCT TCTCGACAAGCTCTCTGTTCTCTCTTTCCTGGGCCTGGCGCCCATCTTTG CTGCTGCGCAGCTCTCCGGTTCCGTGGGACCGCTGACATCCGCGTCCACC AAGGCAGCTACCAAGACTTGCAACGTTTTGGACTACGGTGCTAAGGCGGA TAAGTCTACTGATCTGGGCGCGCCGTTGGCATCTGCCTTCGCTGACTGCA AGTCTGGCGGTCTCGTCTATGTCCCCTCTGGTGACTATGCTCTCTCCACT TGGGCGAGGTTGAGCGGTGGTGAGGCATGGGCTCTGCAGATCGATGGAAT CATCTACCGTACTGGCACGGACGGCGGCAACATGATCTATATCGAGCACT CTAGCGACTTCGAACTTTTCAGTAGCACCTCCGAAGGTGCCATGCAGGGT CTGGGCTACGAGTTCCATGCCGATGATAACTGGAGCGGCCCTCGTCTGCT GCGACTCTATGAAGTTACTGACTTCTCGGTCCACGATTTCATCCTGGTTG ACTCTCCCTCTTTCCACTTCTCTCTCGACACTTGCACCAATGGCGAAATC TACAACATGGCAATCCGCGGCGGTAACCATGGTGGTCTGGATGGTATTGA TGTCTGGAGTAACAACATCTGGGTCCACGATGACACGGCAACGCTTACTC TCTGGATATCGACAGCTACTGGGCCAGTATGAGCGCGGTGGACGGCGATG GTGTCCAGCTGAGCAACATCACCGTGAAGAACTGGAAGGGAACCGAAGCT TACGGTGCTGAGCGTGGTCCTGTCAAGGTGGTCTGTGCTGATGGTGCCCC TTGCTACGACATTACCATTGAGGACTTCGCCATGTGGACCGAGGAGGGTG ATAGTCAGTGGTACTCTTGTGAGAGTGCTTATGGCAGCGGATACTGCCTT CAGGACAGCGATGACCACGTCTCTTACTCGGTCACCACTTCTACAGTCAG CTCCGCTCCCTCGGGCTACTCTGCGACCTCCATGGCCGCCGATCTGACCA CTGACTTCGGCTCTACTGTCTCTATCCCCATCCCGACCATCCCTACCTCT TTCTACCCGGGTGCCACCCCCTACAGTGCTCTGATGGCCAACAGCGCTTC TACTGCCGCTGCTTCTTCCATTGCCAGCCATGCCACTGTCCATAGCAGCA GCGCTTCCGTTGCTGCTTCTGTGCCCAGCGCTGTCGCCCCTAGCGAGAGC ATCCCCGCCGCCACTTCCGCCGTGGTATCCAGCGCTGCTGCCATTGCCCC CAGCCCCGCTGTGGGTGCCCAGGAGGGGTCTACCACCTCCGCTCCCAGCT TTGCTGCCCCCAGTGGTGCTGGAAACTCTCCCCAGGGTCCCACCGGAGCT TCTGGATTCGGCGAAAAGGGCCAGCAGGGTGAGCAGGGTGAACAGGGCGA ACAGGGCGAGCAGGGTGTCTGCTACGTGTAAAGCCCATCGAAGAACATCC TCATTGAGAGCATCTACTGCAACTGGAGTGGTGGCTGTGGTATGGGCTCG TTTGGCTCTGATACCAATGTTAGCGACATCACTTACCGCAACATCTACAC CTGGAGCTCGAACAACATGATGTTGATCAAGAGCAACGGAGGTAGCGGCT TCGTCGAGAATGTCCTCCTCGAGAACTTCATTGGTCGAGGTGACGAACAA GGACGAGTGTGTCACAGTCAAGATGCTTCTCGACAAGCTCTCTGTTCTCT CTTTCCTGGGCCTGGCGCCCATCTTTGCTGCTGCGCAGCTCTCCGGTTCC GTGGGACCGCTGACATCCGCGTCCACCAAGGCAGCTACCAAGACTTGCAA CGTTTTGGACTACGGTGCTAAGGCGGATAAGTCTACTGATCTGGGCGCGC CGTTGGCATCTGCCTTCGCTGACTGCAAGTCTGGCGGTCTCGTCTATGTC CCCTCTGGTGACTATGCTCTCTCCACTTGGGCGAGGTTGAGCGGTGGTGA GGCATGGGCTCTGCAGATCGATGGAATCATCTACCGTACTGGCACGGACG GCGGCAACATGATCTATATCGAGCACTCTAGCGACTTCGAACTTTTCAGT AGCACCTCCGAAGGTGCCATGCAGGGTCTGGGCTACGAGTTCCATGCCGA TGATAACTGGAGCGGCCCTCGTCTGCTGCGACTCTATGAAGTTACTGACT TCTCGGTCCACGATTTCATCCTGGTTGACTCTCCCTCTTTCCACTTCTCT CTCGACACTTGCACCAATGGCGAAATCTACAACATGGCAATCCGCGGCGG TAACCATGGTGGTCTGGATGGTATTGATGTCTGGAGTAACAACATCTGGG TCCACGAT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
Term | Definition |
GO:0004650 | polygalacturonase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
Property Name | Value |
Note | SECRETED:SignalP(1-21) |
Note | CAZy:GH28 |
DBxref | InterPro:IPR011050 |
DBxref | InterPro:IPR012334 |
DBxref | InterPro:IPR000743 |
DBxref | PFAM:PF00295 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch1 | supercontig | ch1:2916496..2919346 - |
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