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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:2995619..2997780+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001172-T1 ID=KJC3_001172-T1|Name=KJC3_001172-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2162bp|location=Sequence derived from alignment at ch1:2995619..2997780+ (Aspergillus niger KJC3)
AACAGGATTCATCACTCGTGTGAACAGAGCCACATAAGGGTGCAGCGCTA
GGGGTTCGCTCGGCGCAACTTGTGCTTAGACGCTTAAGTCACTGGCCAAT
TACTACAATACGTATGATGATTCCCCCGCCGCAGCAGCAAAGCAACTTGC
TTGCTTGTCGTCCATCCATTTCCTTCCCAAGCGCCATGCCATCCCCTCTC
CACTCCGGCGATTGTGATCACCCAATTGCGGTTGTACTTGCTTACTGGTT
ATAATCTCGTTGCCTTCCGGTTTCCTGTCCTGGTGGGTGTGGATGTACTT
CTGGATTTTTTCTGTTTCTCTTTCTTTTTGTTCTACTTTGGTTCTTGATT
TGGTGACTTGGACTCATTTGGATGTTGAACTTCATCTCTGCACACTCACT
GTGCTATACCGCTTATTGATGCTTCTCTCCTCCGGGTTGCGAGCGGAGGG
TGTGCGCCTCGCCGGTACATGTAGATCCCTACGGGACGACCGCATTTGAG
CGACCTGACAATATCATTCAACCCTCGAGAACCTTCTTTTGCTTGGGTGT
CAAAGAGCTGAAACGCTCTGCGCACTACGGTATAGTGTCTGAAGCTGTAG
ACAAGTTCACGAGTTTGCGATCTGGAATCAGAAGCGACCGCCACCATGAA
CAGACAACTGCAGCTGAATACGTCCAATCTGGGCTCCAATCCGAGATACT
CTTATATGGAAACTCCGTTAGAGATGCATGCTCCAGGAAGCCGACTAAGA
GACGAGATCACACCTCCAGCGGCCACAACGAACACCCAGTCAACAGAATC
ACAGACTGTCATGGAGCACTTTCAACCACCGGTGAATGAGAAGTCGCAAC
AATACCAGCAAGACATGGCCGTTCAAGGCTATCCCTGCGGACCAAATCTC
GAACAACATCCAGCCAACTATGCGCCGTACGCGGATGAGATCCAACAAGT
CCAGCAGAATCCGAAAGTGCCTGAATACTCTTACGCACAGCCTCCACAAT
CCCCGGGCCCTCTTCCAGTCAAAAAAGACCTGGAAATGTCAGAACCGTTA
CCAAATAAACAGCCTATGGCTGTTGTGCCAGACACGAATCCTTTACATTC
GCCTCAATTACCCCAGTTTCCCCCTCCAGTCGCCCATGGGGCGCCAGCGA
CACCTGCAGGATTTGACCTTATGGCATATCATCGGCCGGGTCAAATAACG
CATCCTGATCTCGAGATTAAAGGCGGATCGTGGCGCACTAGCATGTGCGG
CTGCTATGATGTTGGGTCATGCTGTCTCGGACTACTCTGTCCATGCATCC
TATTCGGAAAAACGCAATATCGACTTTCTATGAAGTCAAGGAGTGAAGAC
CCAACCAATATGCTCGGGTATGAAACGTGTAATAGCTCCTGCACCGCTAT
GGCTCTGGCCTGTGGGTGTCAATGTAAGTGTGCACCTTTCCAGTTAGTCT
TCAGCACCAGCAAAGTATGCTAACAAGCTGTCGCAGGTTTTCTGGCAACA
TTTCAGCGCCGTCGAACGCGAAAAGCCTATAAGATCGAAGGGGATATTGT
CTCCGACTGCGTTCGAGCTACGTGCTGCACATGCTGTACGCTCATCCAAA
ACGAGGTCGAGATCAAGAAACGGGAAGAAGAACGCGGGAGATATGCTAGT
GCCACGGGGGCAGCGTTAGTATCACCATACCTGCCTCCGACGCAGATGTC
GTACGGACCACCTCCGAGGTGATGGGACTTCCGTAAGGGCTTTTCTGGGG
GAGGAATGTGGGGGTGTGAGACCCTGATCACTGTTTGGACTATAGAAGGA
GGGGGGGGGAGAGAGAGAGTAATGGGGATGTTTGTACGACTGAAGTGGTG
TCTAACTAAGGGACGCAGTGCATGGGATCTGGTTAATTCCGTCCTCTCTC
ATCCATCTGTACTACCATGTTTGTTTTGTTGGGAGGCTGAGGTCTCCGTG
TGATCGATTGTCAGTCAAACATGTTCCCTCGTGGCCTTCGTCTTATGCTT
GGGGTCCCATCGCGGGTCGATTTTTGTCAAGATTGCTGGTGTGGACCTGC
ACTGGGGTCTAGCCAACTTGTACATACATAATCAATCAGGACAACTGTCA
TAGTTGCATTGCAGAATACAAGCAAGAGTTCCGAACGAGATAGCTGTACA
GTTAGAAAGAGG back to topCoding sequence (CDS) from alignment at ch1:2995619..2997780+ >KJC3_001172-T1 ID=KJC3_001172-T1|Name=KJC3_001172-T1|organism=Aspergillus niger KJC3|type=CDS|length=2028bp|location=Sequence derived from alignment at ch1:2995619..2997780+ (Aspergillus niger KJC3)
ATGAACAGACAACTGCAGCTGAATACGTCCAATCTGGGCTCCAATCCGAG
ATACTCTTATATGGAAACTCCGTTAGAGATGCATGCTCCAGGAAGCCGAC
TAAGAGACGAGATCACACCTCCAGCGGCCACAACGAACACCCAGTCAACA
GAATCACAGACTGTCATGGAGCACTTTCAACCACCGGTGAATGAGAAGTC
GCAACAATACCAGCAAGACATGGCCGTTCAAGGCTATCCCTGCGGACCAA
ATCTCGAACAACATCCAGCCAACTATGCGCCGTACGCGGATGAGATCCAA
CAAGTCCAGCAGAATCCGAAAGTGCCTGAATACTCTTACGCACAGCCTCC
ACAATCCCCGGGCCCTCTTCCAGTCAAAAAAGACCTGGAAATGTCAGAAC
CGTTACCAAATAAACAGCCTATGGCTGTTGTGCCAGACACGAATCCTTTA
CATTCGCCTCAATTACCCCAGTTTCCCCCTCCAGTCGCCCATGGGGCGCC
AGCGACACCTGCAGGATTTGACCTTATGGCATATCATCGGCCGGGTCAAA
TAACGCATCCTGATCTCGAGATTAAAGGCGGATCGTGGCGCACTAGCATG
TGCGGCTGCTATGATGTTGGGTCATGCTGTCTCGGACTACTCTGTCCATG
CATCCTATTCGGAAAAACGCAATATCGACTTTCTATGAAGTCAAGGAGTG
AAGACCCAACCAATATGCTCGGGTATGAAACGTGTAATAGCTCCTGCACC
GCTATGGCTCTGGCCTGTGGGTGTCAATGTTTTCTGGCAACATTTCAGCG
CCGTCGAACGCGAAAAGCCTATAAGATCGAAGGGGATATTGTCTCCGACT
GCGTTCGAGCTACGTGCTGCACATGCTGTACGCTCATCCAAAACGAGGTC
GAGATCAAGAAACGGGAAGAAGAACGCGGGAGATATGCTAGTGCCACGGG
GGCAGCGTTAGTATCACCATACCTGCCTCCGACGCAGATGTCGTACGGAC
CACCTCCGAGGTGAATGAACAGACAACTGCAGCTGAATACGTCCAATCTG
GGCTCCAATCCGAGATACTCTTATATGGAAACTCCGTTAGAGATGCATGC
TCCAGGAAGCCGACTAAGAGACGAGATCACACCTCCAGCGGCCACAACGA
ACACCCAGTCAACAGAATCACAGACTGTCATGGAGCACTTTCAACCACCG
GTGAATGAGAAGTCGCAACAATACCAGCAAGACATGGCCGTTCAAGGCTA
TCCCTGCGGACCAAATCTCGAACAACATCCAGCCAACTATGCGCCGTACG
CGGATGAGATCCAACAAGTCCAGCAGAATCCGAAAGTGCCTGAATACTCT
TACGCACAGCCTCCACAATCCCCGGGCCCTCTTCCAGTCAAAAAAGACCT
GGAAATGTCAGAACCGTTACCAAATAAACAGCCTATGGCTGTTGTGCCAG
ACACGAATCCTTTACATTCGCCTCAATTACCCCAGTTTCCCCCTCCAGTC
GCCCATGGGGCGCCAGCGACACCTGCAGGATTTGACCTTATGGCATATCA
TCGGCCGGGTCAAATAACGCATCCTGATCTCGAGATTAAAGGCGGATCGT
GGCGCACTAGCATGTGCGGCTGCTATGATGTTGGGTCATGCTGTCTCGGA
CTACTCTGTCCATGCATCCTATTCGGAAAAACGCAATATCGACTTTCTAT
GAAGTCAAGGAGTGAAGACCCAACCAATATGCTCGGGTATGAAACGTGTA
ATAGCTCCTGCACCGCTATGGCTCTGGCCTGTGGGTGTCAATGTTTTCTG
GCAACATTTCAGCGCCGTCGAACGCGAAAAGCCTATAAGATCGAAGGGGA
TATTGTCTCCGACTGCGTTCGAGCTACGTGCTGCACATGCTGTACGCTCA
TCCAAAACGAGGTCGAGATCAAGAAACGGGAAGAAGAACGCGGGAGATAT
GCTAGTGCCACGGGGGCAGCGTTAGTATCACCATACCTGCCTCCGACGCA
GATGTCGTACGGACCACCTCCGAGGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001172-T1.utr5p1 | KJC3_001172-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001172-T1.utr3p1 | KJC3_001172-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR006461 |
| DBxref | PFAM:PF04749 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:2995619..2997780 + |
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