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KJC3_001198-T1, KJC3_001198-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001198-T1
Unique NameKJC3_001198-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3068447..3069389+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001198-T1 ID=KJC3_001198-T1|Name=KJC3_001198-T1|organism=Aspergillus niger KJC3|type=mRNA|length=943bp|location=Sequence derived from alignment at ch1:3068447..3069389+ (Aspergillus niger KJC3)
GCCGGCTCTTGCAATTATCACCATCTTCAACTACTCATCTCTCCTTTCTA
CGTTTCATACTCCAATTCTCTAGTGTCTATTTTTCTGTTTCACAGACCCT
AATCAGTCACCATGCCTCGTTCCAAGCGTGCCCGCGTCGTGCACGAGTCC
AAGACCACCAAAAAGTCCCACAAGGAACAGACCCGTCGCCTGTACGCTAA
CATCCGGGAATGCATTGAGAAGTACGACCACCTGTTCGTCTTCGGCGTGG
ACAACATGCGCAACACCTATCTGAAGGATGTCCGTACCGAGTTCGCCGAT
AGCCGGTTAGTCTTCTCTCTCCCCAGCAACCCCCGCCTATCCCCAAGATG
CCCCTCCACTCCAACAACCATGCATGCAAACTAACCACCTGAGCAGTCTC
TTCTTCGGCAAAACCAAGGTCATGGCCGTCGCTCTGGGCCACAACCCCGA
AAACGAAGCCGCGCCCAACCTCCACAAACTCAACCCCTACCTCACCGGCG
CCGTCGGTCTCCTCTTCACCTCCCGCGACCCTCAATCCGTGACCGACTAC
TTCGAGTCCTTCCGGCCGCTTGACTTCGCCCGCTCCGGGACAGTTAGTAC
CCGGGCGTTCTCGATCCCCAACGGCCAGGTGTATTCGCGGGCCGGAGAGA
TCCCCGTCTCCGAGGACGAGCCGCTCAGCCATACCATTGAGCCGGAGTTG
CGTAAACTCGGTGTCCCGACTCGGTTGGTTAAGGGCAAGGTCATGCTGGA
GTTGACGGAGGGTCAGGAGGGATTCCCCGTTTGCAGGGAGGGAGAGGTGC
TGGATTCGAGGCAGACGACGTTGTTGAAGATGTTTGGGGTTGTTATGGCT
GAGTTCCATGTTGCGTTGAAGGCTCATTGGACGAGGGAGTCTGGGGAGGT
GGAGATTCTGGAGAAGGATGAGGCTGGTATGGAGGTTGAGTAA
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Coding sequence (CDS) from alignment at ch1:3068447..3069389+

>KJC3_001198-T1 ID=KJC3_001198-T1|Name=KJC3_001198-T1|organism=Aspergillus niger KJC3|type=CDS|length=1482bp|location=Sequence derived from alignment at ch1:3068447..3069389+ (Aspergillus niger KJC3)
ATGCCTCGTTCCAAGCGTGCCCGCGTCGTGCACGAGTCCAAGACCACCAA
AAAGTCCCACAAGGAACAGACCCGTCGCCTGTACGCTAACATCCGGGAAT
GCATTGAGAAGTACGACCACCTGTTCGTCTTCGGCGTGGACAACATGCGC
AACACCTATCTGAAGGATGTCCGTACCGAGTTCGCCGATAGCCGTCTCTT
CTTCGGCAAAACCAAGGTCATGGCCGTCGCTCTGGGCCACAACCCCGAAA
ACGAAGCCGCGCCCAACCTCCACAAACTCAACCCCTACCTCACCGGCGCC
GTCGGTCTCCTCTTCACCTCCCGCGACCCTCAATCCGTGACCGACTACTT
CGAGTCCTTCCGGCCGCTTGACTTCGCCCGCTCCGGGACAGTTAGTACCC
GGGCGTTCTCGATCCCCAACGGCCAGGTGTATTCGCGGGCCGGAGAGATC
CCCGTCTCCGAGGACGAGCCGCTCAGCCATACCATTGAGCCGGAGTTGCG
TAAACTCGGTGTCCCGACTCGGTTGGTTAAGGGCAAGGTCATGCTGGAGT
TGACGGAGGGTCAGGAGGGATTCCCCGTTTGCAGGGAGGGAGAGGTGCTG
GATTCGAGGCAGACGACGTTGTTGAAGATGTTTGGGGTTGTTATGGCTGA
GTTCCATGTTGCGTTGAAGGCTCATTGGACGAGGGAGTCTGGGGAGGTGG
AGATTCTGGAGAAGGATGAGGCTGGTATGGAGGTTGAGTAAATGCCTCGT
TCCAAGCGTGCCCGCGTCGTGCACGAGTCCAAGACCACCAAAAAGTCCCA
CAAGGAACAGACCCGTCGCCTGTACGCTAACATCCGGGAATGCATTGAGA
AGTACGACCACCTGTTCGTCTTCGGCGTGGACAACATGCGCAACACCTAT
CTGAAGGATGTCCGTACCGAGTTCGCCGATAGCCGTCTCTTCTTCGGCAA
AACCAAGGTCATGGCCGTCGCTCTGGGCCACAACCCCGAAAACGAAGCCG
CGCCCAACCTCCACAAACTCAACCCCTACCTCACCGGCGCCGTCGGTCTC
CTCTTCACCTCCCGCGACCCTCAATCCGTGACCGACTACTTCGAGTCCTT
CCGGCCGCTTGACTTCGCCCGCTCCGGGACAGTTAGTACCCGGGCGTTCT
CGATCCCCAACGGCCAGGTGTATTCGCGGGCCGGAGAGATCCCCGTCTCC
GAGGACGAGCCGCTCAGCCATACCATTGAGCCGGAGTTGCGTAAACTCGG
TGTCCCGACTCGGTTGGTTAAGGGCAAGGTCATGCTGGAGTTGACGGAGG
GTCAGGAGGGATTCCCCGTTTGCAGGGAGGGAGAGGTGCTGGATTCGAGG
CAGACGACGTTGTTGAAGATGTTTGGGGTTGTTATGGCTGAGTTCCATGT
TGCGTTGAAGGCTCATTGGACGAGGGAGTCTGGGGAGGTGGAGATTCTGG
AGAAGGATGAGGCTGGTATGGAGGTTGAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0000027ribosomal large subunit assembly
GO:0042254ribosome biogenesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001198KJC3_001198Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001198-T1.utr5p1KJC3_001198-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001198-T1.exon1KJC3_001198-T1.exon1Aspergillus niger KJC3exon
KJC3_001198-T1.exon2KJC3_001198-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001198-T1.cdsKJC3_001198-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001198-T1KJC3_001198-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_1.14
NoteantiSMASH:Cluster_1.13
NoteBUSCO:EOG09264W46
DBxrefInterPro:IPR033867
DBxrefInterPro:IPR040637
DBxrefInterPro:IPR043141
DBxrefInterPro:IPR043164
DBxrefInterPro:IPR001790
DBxrefPFAM:PF17777
DBxrefPFAM:PF00466
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3068447..3069389 +
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