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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3070286..3072018- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001199-T1 ID=KJC3_001199-T1|Name=KJC3_001199-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1733bp|location=Sequence derived from alignment at ch1:3070286..3072018- (Aspergillus niger KJC3)
CGCGAAACTCCCTCAACGCTGCTAGGACCAAGTGACAAAAGACCGCCATA
TCTCCTCTCGCCATCTCGTCCTTTCATCCTCGATGCCTCTGAAGGCTTTG
AATTAATTTTCACGTTTATTCAGAGCACTGGCTGAGGGCACAACATGACG
GACAAGCTCCCCCCTCCGCTTCTGGCGCTCTTCCAACCTCGCCCGCCTCT
GCGTTATGTCACCCCCATCAACCGTGCCCCAGAAGACTGCAAGAAGAGTA
GCATCGGTGGTATTGCGCAGTTCCTTCCTGAGGTGAAGAAGTATGAGGAA
GAGATCCCATATACGCCTACGGAAAGCTGGATCCAGCGCAAACTGCGCCA
GAAAGTGGAGAAGAAAGAGAACATTAACAAGCAATTGACGGAAGGCCTCG
AGACCTGTATGATCATCGCATCTATTCTGGGCTATATCAGTGTCAATACT
GATGATTTGCTGCAGATGAACCATCCAACGACCAACAAGCACGAGGCGAC
CCGTTCAAGACGCTGTTTGTCGCTAGACTGAGCTACGATGTCAAGGAATC
GGACCTGGAACGGGAATTTGGTCGTTTCGGCCCTATTGAACGGGTACAGT
CACAGGCCGAGCGGGCTTGATGGGTTACACGCATCACTGACGTCTCCCAG
ATTCGCATCGTGAAAGACACCGTAACGCCAAAGGGCTCGAAGAAACCACA
CAGGGGATATGCTTTTATTGTCTATGAGCGCGAAAAGGATATGAAAGGTA
TTGCTACAGATCTAGTCGCCTGTCACTCTGGATTCACACTGGTATCGAAT
CCCCGTACTTCATTGATGCTAACCTAGTTTTCTTTTGTCACGAATTCAGC
TGCCTACAAGGAAACGGATGGTATCCGCATCAAGGACCGCCGTGTCTTGG
TAGACGTCGAGCGCGGTCGTACAGTCAAGGGATGGAAGCCTCGTCGCTTT
GGTGGTGGTCTTGGAGGTCGTGGTTACACCAAGGCTTTGCCGTCTCGACC
TATCGGCCCTGGCTCTTTCAACGCCCCCTCTGGTCCCGGCGGCTATGGTG
GTGGATTCCGGGGTGGGTTCGGTGGCCGAGGTGGTTTCAAGGGAGGATTC
CGCGGTGACCGTGGATTTGGTGGGCCCCGCGGGGGTGTTGGATACCAAGG
TGGTCGCAACGGATTCGGTGGAGGCGGACAGGCTCCCCCCAACGCCCCTT
CAGGTCCGGGAGGCGGACGCAGCGGTGGGTTTGGTGGTCCCCCTGGCGGC
GGCAGATTTGAGCGTGAACCCCGGGGCGCCACTGGCAGCAACAGAGAACC
CATCAGGCCCCGGGACGGGTTTGGCGACCGCGATCGTCGAGACCGTGATC
GGGACCGCGACGGTGACCGTCACCGGGACCGTGATCGGGATAGTTATCGC
TACCGTGACCGCGACCGTGAACGCGACCGCGATCGTGGTGACAGGTACGG
AGGCCGGGGCGACGACTACGGGCGGAAGCGATACCATGAAGATGATTCGT
ATGATGACCCCCGTGCGAAGAGAAGATACTGAACCACTGTCCGCGAAGGA
TATCCCCATTCCAGTGTTTAATGACGGTTTGCTGGTGGGTATCATTAACT
TGGTCTTTCTCTTGTTATACCCCGTTGCAACAATGGGTAAGGCAAGGTCA
AATAAGGCTCAAGCTCCGTGCTACATCGGACTTCAACCATCGTATAACTC
ACAACAGTTGAAGTGCTCCGTACGAATCTTTCC back to topCoding sequence (CDS) from alignment at ch1:3070286..3072018- >KJC3_001199-T1 ID=KJC3_001199-T1|Name=KJC3_001199-T1|organism=Aspergillus niger KJC3|type=CDS|length=4680bp|location=Sequence derived from alignment at ch1:3070286..3072018- (Aspergillus niger KJC3)
CTGCCTACAAGGAAACGGATGGTATCCGCATCAAGGACCGCCGTGTCTTG
GTAGACGTCGAGCGCGGTCGTACAGTCAAGGGATGGAAGCCTCGTCGCTT
TGGTGGTGGTCTTGGAGGTCGTGGTTACACCAAGGCTTTGCCGTCTCGAC
CTATCGGCCCTGGCTCTTTCAACGCCCCCTCTGGTCCCGGCGGCTATGGT
GGTGGATTCCGGGGTGGGTTCGGTGGCCGAGGTGGTTTCAAGGGAGGATT
CCGCGGTGACCGTGGATTTGGTGGGCCCCGCGGGGGTGTTGGATACCAAG
GTGGTCGCAACGGATTCGGTGGAGGCGGACAGGCTCCCCCCAACGCCCCT
TCAGGTCCGGGAGGCGGACGCAGCGGTGGGTTTGGTGGTCCCCCTGGCGG
CGGCAGATTTGAGCGTGAACCCCGGGGCGCCACTGGCAGCAACAGAGAAC
CCATCAGGCCCCGGGACGGGTTTGGCGACCGCGATCGTCGAGACCGTGAT
CGGGACCGCGACGGTGACCGTCACCGGGACCGTGATCGGGATAGTTATCG
CTACCGTGACCGCGACCGTGAACGCGACCGCGATCGTGGTGACAGGTACG
GAGGCCGGGGCGACGACTACGGGCGGAAGCGATACCATGAAGATGATTCG
TATGATGACCCCCGTGCGAAGAGAAGATACTGAATTCGCATCGTGAAAGA
CACCGTAACGCCAAAGGGCTCGAAGAAACCACACAGGGGATATGCTTTTA
TTGTCTATGAGCGCGAAAAGGATATGAAAGATGAACCATCCAACGACCAA
CAAGCACGAGGCGACCCGTTCAAGACGCTGTTTGTCGCTAGACTGAGCTA
CGATGTCAAGGAATCGGACCTGGAACGGGAATTTGGTCGTTTCGGCCCTA
TTGAACGGATGACGGACAAGCTCCCCCCTCCGCTTCTGGCGCTCTTCCAA
CCTCGCCCGCCTCTGCGTTATGTCACCCCCATCAACCGTGCCCCAGAAGA
CTGCAAGAAGAGTAGCATCGGTGGTATTGCGCAGTTCCTTCCTGAGGTGA
AGAAGTATGAGGAAGAGATCCCATATACGCCTACGGAAAGCTGGATCCAG
CGCAAACTGCGCCAGAAAGTGGAGAAGAAAGAGAACATTAACAAGCAATT
GACGGAAGGCCTCGAGACCTCTGCCTACAAGGAAACGGATGGTATCCGCA
TCAAGGACCGCCGTGTCTTGGTAGACGTCGAGCGCGGTCGTACAGTCAAG
GGATGGAAGCCTCGTCGCTTTGGTGGTGGTCTTGGAGGTCGTGGTTACAC
CAAGGCTTTGCCGTCTCGACCTATCGGCCCTGGCTCTTTCAACGCCCCCT
CTGGTCCCGGCGGCTATGGTGGTGGATTCCGGGGTGGGTTCGGTGGCCGA
GGTGGTTTCAAGGGAGGATTCCGCGGTGACCGTGGATTTGGTGGGCCCCG
CGGGGGTGTTGGATACCAAGGTGGTCGCAACGGATTCGGTGGAGGCGGAC
AGGCTCCCCCCAACGCCCCTTCAGGTCCGGGAGGCGGACGCAGCGGTGGG
TTTGGTGGTCCCCCTGGCGGCGGCAGATTTGAGCGTGAACCCCGGGGCGC
CACTGGCAGCAACAGAGAACCCATCAGGCCCCGGGACGGGTTTGGCGACC
GCGATCGTCGAGACCGTGATCGGGACCGCGACGGTGACCGTCACCGGGAC
CGTGATCGGGATAGTTATCGCTACCGTGACCGCGACCGTGAACGCGACCG
CGATCGTGGTGACAGGTACGGAGGCCGGGGCGACGACTACGGGCGGAAGC
GATACCATGAAGATGATTCGTATGATGACCCCCGTGCGAAGAGAAGATAC
TGAATTCGCATCGTGAAAGACACCGTAACGCCAAAGGGCTCGAAGAAACC
ACACAGGGGATATGCTTTTATTGTCTATGAGCGCGAAAAGGATATGAAAG
ATGAACCATCCAACGACCAACAAGCACGAGGCGACCCGTTCAAGACGCTG
TTTGTCGCTAGACTGAGCTACGATGTCAAGGAATCGGACCTGGAACGGGA
ATTTGGTCGTTTCGGCCCTATTGAACGGATGACGGACAAGCTCCCCCCTC
CGCTTCTGGCGCTCTTCCAACCTCGCCCGCCTCTGCGTTATGTCACCCCC
ATCAACCGTGCCCCAGAAGACTGCAAGAAGAGTAGCATCGGTGGTATTGC
GCAGTTCCTTCCTGAGGTGAAGAAGTATGAGGAAGAGATCCCATATACGC
CTACGGAAAGCTGGATCCAGCGCAAACTGCGCCAGAAAGTGGAGAAGAAA
GAGAACATTAACAAGCAATTGACGGAAGGCCTCGAGACCTCTGCCTACAA
GGAAACGGATGGTATCCGCATCAAGGACCGCCGTGTCTTGGTAGACGTCG
AGCGCGGTCGTACAGTCAAGGGATGGAAGCCTCGTCGCTTTGGTGGTGGT
CTTGGAGGTCGTGGTTACACCAAGGCTTTGCCGTCTCGACCTATCGGCCC
TGGCTCTTTCAACGCCCCCTCTGGTCCCGGCGGCTATGGTGGTGGATTCC
GGGGTGGGTTCGGTGGCCGAGGTGGTTTCAAGGGAGGATTCCGCGGTGAC
CGTGGATTTGGTGGGCCCCGCGGGGGTGTTGGATACCAAGGTGGTCGCAA
CGGATTCGGTGGAGGCGGACAGGCTCCCCCCAACGCCCCTTCAGGTCCGG
GAGGCGGACGCAGCGGTGGGTTTGGTGGTCCCCCTGGCGGCGGCAGATTT
GAGCGTGAACCCCGGGGCGCCACTGGCAGCAACAGAGAACCCATCAGGCC
CCGGGACGGGTTTGGCGACCGCGATCGTCGAGACCGTGATCGGGACCGCG
ACGGTGACCGTCACCGGGACCGTGATCGGGATAGTTATCGCTACCGTGAC
CGCGACCGTGAACGCGACCGCGATCGTGGTGACAGGTACGGAGGCCGGGG
CGACGACTACGGGCGGAAGCGATACCATGAAGATGATTCGTATGATGACC
CCCGTGCGAAGAGAAGATACTGAATTCGCATCGTGAAAGACACCGTAACG
CCAAAGGGCTCGAAGAAACCACACAGGGGATATGCTTTTATTGTCTATGA
GCGCGAAAAGGATATGAAAGATGAACCATCCAACGACCAACAAGCACGAG
GCGACCCGTTCAAGACGCTGTTTGTCGCTAGACTGAGCTACGATGTCAAG
GAATCGGACCTGGAACGGGAATTTGGTCGTTTCGGCCCTATTGAACGGAT
GACGGACAAGCTCCCCCCTCCGCTTCTGGCGCTCTTCCAACCTCGCCCGC
CTCTGCGTTATGTCACCCCCATCAACCGTGCCCCAGAAGACTGCAAGAAG
AGTAGCATCGGTGGTATTGCGCAGTTCCTTCCTGAGGTGAAGAAGTATGA
GGAAGAGATCCCATATACGCCTACGGAAAGCTGGATCCAGCGCAAACTGC
GCCAGAAAGTGGAGAAGAAAGAGAACATTAACAAGCAATTGACGGAAGGC
CTCGAGACCTCTGCCTACAAGGAAACGGATGGTATCCGCATCAAGGACCG
CCGTGTCTTGGTAGACGTCGAGCGCGGTCGTACAGTCAAGGGATGGAAGC
CTCGTCGCTTTGGTGGTGGTCTTGGAGGTCGTGGTTACACCAAGGCTTTG
CCGTCTCGACCTATCGGCCCTGGCTCTTTCAACGCCCCCTCTGGTCCCGG
CGGCTATGGTGGTGGATTCCGGGGTGGGTTCGGTGGCCGAGGTGGTTTCA
AGGGAGGATTCCGCGGTGACCGTGGATTTGGTGGGCCCCGCGGGGGTGTT
GGATACCAAGGTGGTCGCAACGGATTCGGTGGAGGCGGACAGGCTCCCCC
CAACGCCCCTTCAGGTCCGGGAGGCGGACGCAGCGGTGGGTTTGGTGGTC
CCCCTGGCGGCGGCAGATTTGAGCGTGAACCCCGGGGCGCCACTGGCAGC
AACAGAGAACCCATCAGGCCCCGGGACGGGTTTGGCGACCGCGATCGTCG
AGACCGTGATCGGGACCGCGACGGTGACCGTCACCGGGACCGTGATCGGG
ATAGTTATCGCTACCGTGACCGCGACCGTGAACGCGACCGCGATCGTGGT
GACAGGTACGGAGGCCGGGGCGACGACTACGGGCGGAAGCGATACCATGA
AGATGATTCGTATGATGACCCCCGTGCGAAGAGAAGATACTGAATTCGCA
TCGTGAAAGACACCGTAACGCCAAAGGGCTCGAAGAAACCACACAGGGGA
TATGCTTTTATTGTCTATGAGCGCGAAAAGGATATGAAAGATGAACCATC
CAACGACCAACAAGCACGAGGCGACCCGTTCAAGACGCTGTTTGTCGCTA
GACTGAGCTACGATGTCAAGGAATCGGACCTGGAACGGGAATTTGGTCGT
TTCGGCCCTATTGAACGGATGACGGACAAGCTCCCCCCTCCGCTTCTGGC
GCTCTTCCAACCTCGCCCGCCTCTGCGTTATGTCACCCCCATCAACCGTG
CCCCAGAAGACTGCAAGAAGAGTAGCATCGGTGGTATTGCGCAGTTCCTT
CCTGAGGTGAAGAAGTATGAGGAAGAGATCCCATATACGCCTACGGAAAG
CTGGATCCAGCGCAAACTGCGCCAGAAAGTGGAGAAGAAAGAGAACATTA
ACAAGCAATTGACGGAAGGCCTCGAGACCT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030619 | U1 snRNA binding |
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001199-T1.utr3p1 | KJC3_001199-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001199-T1.utr5p1 | KJC3_001199-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264G1F |
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR034143 |
| DBxref | InterPro:IPR022023 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF12220 |
| DBxref | PFAM:PF00076 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3070286..3072018 - |
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