|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3107804..3109795+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001215-T1 ID=KJC3_001215-T1|Name=KJC3_001215-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1992bp|location=Sequence derived from alignment at ch1:3107804..3109795+ (Aspergillus niger KJC3)
ATGAATGCTCGCAGAGAGGGGATTGACTTCCTCACTCCGAATCCCTTCAA
CGTGCGGCACAGCAACTATGAATCAATACTGCAGCAACTGCAGGGCAACC
CATCCTTAGTTGCCTCTATTTTAGTGACTGTCATCACTTTGTATTTAGCC
GTCAGCTATTTGGGCCCAGCTTCGTTGTCGGTGGCTCGGATAGCCTGGAA
TATACTTGTCTACTTGACACCTTCGCGATTGATTGCCGCCCTAGATTCCA
AGACACCGAAATCCGACGAGAACCCTCTTTCGTTGACCTTCGAGGCCAAG
AGTGAAGCGATGCAACGTATACTTGGCCTTGACGATACCTCCTTCTCCTC
CCTCTTCCCTCGCGCTCCGGCTTTCTCGAGCTTCGGGACCTCCCTCTTGA
GCAGCAAAAACAACGTACCGCCAGGGCTTGGAAACTGGGATAATTCGTGC
TACCAGAATAGCATAATACAAGGACTGGCGTCCCTTCAGTCGCTGGAGAG
ATTCTTGGATCAAAACGTTGAGCAGCTAGGACAAAAAGCTCTTTTGTCCA
CGCATCAAGCTTTGAAGGATATCATAGAGCGACTCAACAGTGCCGACAGC
AATGGCCAACTTCTATGGACTCCGGCAGATCTCAAATCTATGAGCAGCTG
GCAACAGCAGGATGCACAGGAATATTTCTCGAAGATCGTTGATCAGTTGG
ATCTGGAAGTCCAACAGGCGACTCGGCGACACACACGCAACTTGGGCCTG
AAGATGGCAGGACCGCAGGAACATGTGATTGGATCTGGTATATCTCAGGA
GCTACAGGAAAGTAGTGCAGGGGAGACACGGATAACAGGAAATCAGATCT
TTCGGAATCCGTTGGAAGGTCTTCTTGCGCAGAGAGTGGGATGCATTCAG
TGCGGTTGGACCGAAGGTCTCTCACTAATTCCTTTTAACTGCTTGACTGT
GCCGCTTGGCCCGAAATTTGAGTACGATATTCGAGAGTGTCTCCATCATT
ACATGCACTTGGAACCCATTGAGGGGGTGGAATGTGCAAAATGTACATTG
TTACGTGTACAGTCTCAGTTACTGAACTTGCTGAAGCAAATCGGCGATGA
TGAGGAGACTCCGAGTGCTACTCCGGAGTCACCAAAGATATCAGATGCGC
TTCGAAGCTCGGCACAGGAGCGCCTACAGGCCGTTGAGCAAGCGTTGGAA
GAGGAGGATTTTGCAGAGAAAACGCTCTCCCAAAAGTGCCATATTCCCGG
AAAGAATCGAGTGTCGTCGACCAAATCCAGACAGGCCGTGGTTGCCAGGC
CTCCACAATGCCTAGTCATTCATGTCAATCGAAGCATGTTCGACGAAAAT
ACAGGAATGCTCCGGAAGAACTACGCAGCCGTCAAATTTCCAAACGCCCT
CGACTTGAATCCGTGGTGCTTGGGCGGGGTCTCCAAGAACCAGAGTGAAC
CAAGTCTAGAAGCTTGGGAAACCAATCCCAGCGTATCAATGCTCTCGCAT
GCAGGAAGAGGCGCGAATGCAGGTGGTCACTATCAGTTGCGTGCTGTGAT
CACCCACTACGGCCGTCATGAGAATGGCCATTACATATGTTACAGAAAAT
ATCCAACCGACACTTTTCCGGCCCACGTCCCGGACGCGATTATCGAGGCA
GATGGAGACAAGGAGAGAGACGAGCGTTGGTACAGGCTAAGCGACGAGGA
CGTGCAGATGGTCAGCGAAGCGAACGTCATGTCTCAGGGCGGCGCCTTCA
TGCTCTTCTACGAGGCGGTTGAGGACTACTCCCCGGAGGCCGCAGAGGAT
GTGGATTCTGGGTTGGCGGAAGAGGAGGGTTCAGCACCTTCTTCTAGCTG
CACGCCATCGGAGACCATGTCCACAACATCTGCTGCCACAGGAGACTCCA
CGTCCGATGTATCGCAAGCGACCAGCGTCTCAACGGCGTTAAATGTTGAA
CCTCGCGTTGAGAAATCCCTGCTTATGTCCGACGTTGACTGA back to topCoding sequence (CDS) from alignment at ch1:3107804..3109795+ >KJC3_001215-T1 ID=KJC3_001215-T1|Name=KJC3_001215-T1|organism=Aspergillus niger KJC3|type=CDS|length=1992bp|location=Sequence derived from alignment at ch1:3107804..3109795+ (Aspergillus niger KJC3)
ATGAATGCTCGCAGAGAGGGGATTGACTTCCTCACTCCGAATCCCTTCAA
CGTGCGGCACAGCAACTATGAATCAATACTGCAGCAACTGCAGGGCAACC
CATCCTTAGTTGCCTCTATTTTAGTGACTGTCATCACTTTGTATTTAGCC
GTCAGCTATTTGGGCCCAGCTTCGTTGTCGGTGGCTCGGATAGCCTGGAA
TATACTTGTCTACTTGACACCTTCGCGATTGATTGCCGCCCTAGATTCCA
AGACACCGAAATCCGACGAGAACCCTCTTTCGTTGACCTTCGAGGCCAAG
AGTGAAGCGATGCAACGTATACTTGGCCTTGACGATACCTCCTTCTCCTC
CCTCTTCCCTCGCGCTCCGGCTTTCTCGAGCTTCGGGACCTCCCTCTTGA
GCAGCAAAAACAACGTACCGCCAGGGCTTGGAAACTGGGATAATTCGTGC
TACCAGAATAGCATAATACAAGGACTGGCGTCCCTTCAGTCGCTGGAGAG
ATTCTTGGATCAAAACGTTGAGCAGCTAGGACAAAAAGCTCTTTTGTCCA
CGCATCAAGCTTTGAAGGATATCATAGAGCGACTCAACAGTGCCGACAGC
AATGGCCAACTTCTATGGACTCCGGCAGATCTCAAATCTATGAGCAGCTG
GCAACAGCAGGATGCACAGGAATATTTCTCGAAGATCGTTGATCAGTTGG
ATCTGGAAGTCCAACAGGCGACTCGGCGACACACACGCAACTTGGGCCTG
AAGATGGCAGGACCGCAGGAACATGTGATTGGATCTGGTATATCTCAGGA
GCTACAGGAAAGTAGTGCAGGGGAGACACGGATAACAGGAAATCAGATCT
TTCGGAATCCGTTGGAAGGTCTTCTTGCGCAGAGAGTGGGATGCATTCAG
TGCGGTTGGACCGAAGGTCTCTCACTAATTCCTTTTAACTGCTTGACTGT
GCCGCTTGGCCCGAAATTTGAGTACGATATTCGAGAGTGTCTCCATCATT
ACATGCACTTGGAACCCATTGAGGGGGTGGAATGTGCAAAATGTACATTG
TTACGTGTACAGTCTCAGTTACTGAACTTGCTGAAGCAAATCGGCGATGA
TGAGGAGACTCCGAGTGCTACTCCGGAGTCACCAAAGATATCAGATGCGC
TTCGAAGCTCGGCACAGGAGCGCCTACAGGCCGTTGAGCAAGCGTTGGAA
GAGGAGGATTTTGCAGAGAAAACGCTCTCCCAAAAGTGCCATATTCCCGG
AAAGAATCGAGTGTCGTCGACCAAATCCAGACAGGCCGTGGTTGCCAGGC
CTCCACAATGCCTAGTCATTCATGTCAATCGAAGCATGTTCGACGAAAAT
ACAGGAATGCTCCGGAAGAACTACGCAGCCGTCAAATTTCCAAACGCCCT
CGACTTGAATCCGTGGTGCTTGGGCGGGGTCTCCAAGAACCAGAGTGAAC
CAAGTCTAGAAGCTTGGGAAACCAATCCCAGCGTATCAATGCTCTCGCAT
GCAGGAAGAGGCGCGAATGCAGGTGGTCACTATCAGTTGCGTGCTGTGAT
CACCCACTACGGCCGTCATGAGAATGGCCATTACATATGTTACAGAAAAT
ATCCAACCGACACTTTTCCGGCCCACGTCCCGGACGCGATTATCGAGGCA
GATGGAGACAAGGAGAGAGACGAGCGTTGGTACAGGCTAAGCGACGAGGA
CGTGCAGATGGTCAGCGAAGCGAACGTCATGTCTCAGGGCGGCGCCTTCA
TGCTCTTCTACGAGGCGGTTGAGGACTACTCCCCGGAGGCCGCAGAGGAT
GTGGATTCTGGGTTGGCGGAAGAGGAGGGTTCAGCACCTTCTTCTAGCTG
CACGCCATCGGAGACCATGTCCACAACATCTGCTGCCACAGGAGACTCCA
CGTCCGATGTATCGCAAGCGACCAGCGTCTCAACGGCGTTAAATGTTGAA
CCTCGCGTTGAGAAATCCCTGCTTATGTCCGACGTTGACTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process |
| GO:0016579 | protein deubiquitination |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004843 | thiol-dependent ubiquitin-specific protease activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | MEROPS:MER0000864 |
| DBxref | InterPro:IPR038765 |
| DBxref | InterPro:IPR028889 |
| DBxref | InterPro:IPR018200 |
| DBxref | InterPro:IPR001394 |
| DBxref | PFAM:PF13423 |
| DBxref | PFAM:PF00443 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3107804..3109795 + |
|
