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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3172979..3174696+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001239-T1 ID=KJC3_001239-T1|Name=KJC3_001239-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1718bp|location=Sequence derived from alignment at ch1:3172979..3174696+ (Aspergillus niger KJC3)
CTTTTTCTGCCCCAGGCACCAACACCTCAAAGCTCCCTTATCGATAAGCC
AATCTCCGATACGAAAATCCATCCATGCTATCATTTTTTCTCCGCATGCG
ACAGACAACATCCACCTCTTCCTCCTCAATAAATAACCCAAACCCCTCCA
CCACACCTCAACCTAATACTTTAGTCTCTCATACCACAGAAGAAAGAAGA
GCAATGTCCACCTCCACCCCCGACTCCCCCCTCTCCGACCTCTGCTCAAT
CTGGTCCGTCCAACATCCTCCCATCTCATCCCAAACCATTCTCCCAATCC
ACACCAACTAACCACAAACCTCTTGTTGTCAAAAAATAACAGCCACCTAC
AACCCCCCAAATACCGCTGTCCGCGCTGCTCGACCCGCACATGCTCCCTC
CCCTGCACGCGGCGCCACAAACTCTGGTCCCAATGCTCCGGGGTCCGGGA
CCCAGCTGCCTACCTACGACGATCTGAACTAGCAACGGAATCCGCCTTTG
ACCGGGACTTTAACTTCATTACGGGGATTGAGCGCTCGATTGAGCGGGCG
GGACGGGACGCCGAGAATAGGGGGATTGATGTTGCTTCGGAGGTAAGGGA
TTTGGAGGCGGTGGGGTTGGATAGTGAGGATACGGAGGGGGTTGCCGCTA
TGGGGAAGAAGGGTGGTGCTGGTGCTGGGGGGAAGAGAAAGAGGGGAGAT
GGTGGTGCAGGTGGTGGGACGAGGGCTGAGATGGAGTTTTTGAGACGCGC
GGAGGAGAGAGGGGTTAAGGTTGTTAGAGCGCCGAAGGGGATGAGTAGGA
ATAAGGGGAATGGGAGTCGGTGGTTGGGAAGGTATGTGTATCTCTATTTC
TTTGCTTGATTTGGGGTGATTGTTTGGTGGGGTTGGGATGAACGCTAACT
GGGTGGTATGTAGGAATCAGTGTTTGGTTTGGACGGTCGAGTGGATTCTG
AGTGATGGGGAGAAGAGGATGAGAAATTGTTCGGAGACGGCTCCTGTTGC
GGATTCTTATGACCGCGTGGTTCCTGTTCCCAAGGAGGAGGGGAGTGATG
AGCAGGATCAGAAACAGACTGGGGATGAGAAGCCGGAGGGGACGTCCGAG
TTGAAGACGGAGGAGCAACAACCACAGGATGCTCCCTCGACTACAGCCCC
CGAGCCAGCCTCGACTACAGAACCTACACAGCCGACAGACGCACCAACTG
CTCAACCGGAAGCTTCAAATGCGACACCAATTACATCGGACTCGCTACCA
CTTACCCCCCACCGTGACCTCTACTTCTATCTTCATCGTCCGCGGACAGC
TACGAAACAGCCTGTTCTGGCCCCCCTGCCCCCAAAGATCTCACTTGCTG
CTGCTCTACGTGATCACATAGTCTTGGAGTTCCCTACTATCTACGTACTG
CCGGACTCACCTGATACTATACGAGCCCAGGAAGATGCCAAGTACATCCT
AGAGGAAGAGTACCTACGCACGCATCAGTCGCCGGAGGAGAGCAGCGATG
ATACGGGGGATGCAGACGACGCTCAATTGCCTCCGGGTGCCATTGACCTC
CGAGGCGTCGACGAGTCCAAGGTTCTGGAAGTCCTCCAGAAGGATCTGTT
CGAGCCTTCGGCAGCAGCGTAGGGCCATCTAGACTTGGCTGGAGCATCAT
GACAGAGAAGGAGGAGGGGATCATTCACTTGTACCTAATACTTGTTCATA
TCATAGCGACAACTGGAG back to topCoding sequence (CDS) from alignment at ch1:3172979..3174696+ >KJC3_001239-T1 ID=KJC3_001239-T1|Name=KJC3_001239-T1|organism=Aspergillus niger KJC3|type=CDS|length=4131bp|location=Sequence derived from alignment at ch1:3172979..3174696+ (Aspergillus niger KJC3)
ATGCTATCATTTTTTCTCCGCATGCGACAGACAACATCCACCTCTTCCTC
CTCAATAAATAACCCAAACCCCTCCACCACACCTCAACCTAATACTTTAG
TCTCTCATACCACAGAAGAAAGAAGAGCAATGTCCACCTCCACCCCCGAC
TCCCCCCTCTCCGACCTCTGCTCAATCTGCCACCTACAACCCCCCAAATA
CCGCTGTCCGCGCTGCTCGACCCGCACATGCTCCCTCCCCTGCACGCGGC
GCCACAAACTCTGGTCCCAATGCTCCGGGGTCCGGGACCCAGCTGCCTAC
CTACGACGATCTGAACTAGCAACGGAATCCGCCTTTGACCGGGACTTTAA
CTTCATTACGGGGATTGAGCGCTCGATTGAGCGGGCGGGACGGGACGCCG
AGAATAGGGGGATTGATGTTGCTTCGGAGGTAAGGGATTTGGAGGCGGTG
GGGTTGGATAGTGAGGATACGGAGGGGGTTGCCGCTATGGGGAAGAAGGG
TGGTGCTGGTGCTGGGGGGAAGAGAAAGAGGGGAGATGGTGGTGCAGGTG
GTGGGACGAGGGCTGAGATGGAGTTTTTGAGACGCGCGGAGGAGAGAGGG
GTTAAGGTTGTTAGAGCGCCGAAGGGGATGAGTAGGAATAAGGGGAATGG
GAGTCGGTGGTTGGGAAGGAATCAGTGTTTGGTTTGGACGGTCGAGTGGA
TTCTGAGTGATGGGGAGAAGAGGATGAGAAATTGTTCGGAGACGGCTCCT
GTTGCGGATTCTTATGACCGCGTGGTTCCTGTTCCCAAGGAGGAGGGGAG
TGATGAGCAGGATCAGAAACAGACTGGGGATGAGAAGCCGGAGGGGACGT
CCGAGTTGAAGACGGAGGAGCAACAACCACAGGATGCTCCCTCGACTACA
GCCCCCGAGCCAGCCTCGACTACAGAACCTACACAGCCGACAGACGCACC
AACTGCTCAACCGGAAGCTTCAAATGCGACACCAATTACATCGGACTCGC
TACCACTTACCCCCCACCGTGACCTCTACTTCTATCTTCATCGTCCGCGG
ACAGCTACGAAACAGCCTGTTCTGGCCCCCCTGCCCCCAAAGATCTCACT
TGCTGCTGCTCTACGTGATCACATAGTCTTGGAGTTCCCTACTATCTACG
TACTGCCGGACTCACCTGATACTATACGAGCCCAGGAAGATGCCAAGTAC
ATCCTAGAGGAAGAGTACCTACGCACGCATCAGTCGCCGGAGGAGAGCAG
CGATGATACGGGGGATGCAGACGACGCTCAATTGCCTCCGGGTGCCATTG
ACCTCCGAGGCGTCGACGAGTCCAAGGTTCTGGAAGTCCTCCAGAAGGAT
CTGTTCGAGCCTTCGGCAGCAGCGTAGATGCTATCATTTTTTCTCCGCAT
GCGACAGACAACATCCACCTCTTCCTCCTCAATAAATAACCCAAACCCCT
CCACCACACCTCAACCTAATACTTTAGTCTCTCATACCACAGAAGAAAGA
AGAGCAATGTCCACCTCCACCCCCGACTCCCCCCTCTCCGACCTCTGCTC
AATCTGCCACCTACAACCCCCCAAATACCGCTGTCCGCGCTGCTCGACCC
GCACATGCTCCCTCCCCTGCACGCGGCGCCACAAACTCTGGTCCCAATGC
TCCGGGGTCCGGGACCCAGCTGCCTACCTACGACGATCTGAACTAGCAAC
GGAATCCGCCTTTGACCGGGACTTTAACTTCATTACGGGGATTGAGCGCT
CGATTGAGCGGGCGGGACGGGACGCCGAGAATAGGGGGATTGATGTTGCT
TCGGAGGTAAGGGATTTGGAGGCGGTGGGGTTGGATAGTGAGGATACGGA
GGGGGTTGCCGCTATGGGGAAGAAGGGTGGTGCTGGTGCTGGGGGGAAGA
GAAAGAGGGGAGATGGTGGTGCAGGTGGTGGGACGAGGGCTGAGATGGAG
TTTTTGAGACGCGCGGAGGAGAGAGGGGTTAAGGTTGTTAGAGCGCCGAA
GGGGATGAGTAGGAATAAGGGGAATGGGAGTCGGTGGTTGGGAAGGAATC
AGTGTTTGGTTTGGACGGTCGAGTGGATTCTGAGTGATGGGGAGAAGAGG
ATGAGAAATTGTTCGGAGACGGCTCCTGTTGCGGATTCTTATGACCGCGT
GGTTCCTGTTCCCAAGGAGGAGGGGAGTGATGAGCAGGATCAGAAACAGA
CTGGGGATGAGAAGCCGGAGGGGACGTCCGAGTTGAAGACGGAGGAGCAA
CAACCACAGGATGCTCCCTCGACTACAGCCCCCGAGCCAGCCTCGACTAC
AGAACCTACACAGCCGACAGACGCACCAACTGCTCAACCGGAAGCTTCAA
ATGCGACACCAATTACATCGGACTCGCTACCACTTACCCCCCACCGTGAC
CTCTACTTCTATCTTCATCGTCCGCGGACAGCTACGAAACAGCCTGTTCT
GGCCCCCCTGCCCCCAAAGATCTCACTTGCTGCTGCTCTACGTGATCACA
TAGTCTTGGAGTTCCCTACTATCTACGTACTGCCGGACTCACCTGATACT
ATACGAGCCCAGGAAGATGCCAAGTACATCCTAGAGGAAGAGTACCTACG
CACGCATCAGTCGCCGGAGGAGAGCAGCGATGATACGGGGGATGCAGACG
ACGCTCAATTGCCTCCGGGTGCCATTGACCTCCGAGGCGTCGACGAGTCC
AAGGTTCTGGAAGTCCTCCAGAAGGATCTGTTCGAGCCTTCGGCAGCAGC
GTAGATGCTATCATTTTTTCTCCGCATGCGACAGACAACATCCACCTCTT
CCTCCTCAATAAATAACCCAAACCCCTCCACCACACCTCAACCTAATACT
TTAGTCTCTCATACCACAGAAGAAAGAAGAGCAATGTCCACCTCCACCCC
CGACTCCCCCCTCTCCGACCTCTGCTCAATCTGCCACCTACAACCCCCCA
AATACCGCTGTCCGCGCTGCTCGACCCGCACATGCTCCCTCCCCTGCACG
CGGCGCCACAAACTCTGGTCCCAATGCTCCGGGGTCCGGGACCCAGCTGC
CTACCTACGACGATCTGAACTAGCAACGGAATCCGCCTTTGACCGGGACT
TTAACTTCATTACGGGGATTGAGCGCTCGATTGAGCGGGCGGGACGGGAC
GCCGAGAATAGGGGGATTGATGTTGCTTCGGAGGTAAGGGATTTGGAGGC
GGTGGGGTTGGATAGTGAGGATACGGAGGGGGTTGCCGCTATGGGGAAGA
AGGGTGGTGCTGGTGCTGGGGGGAAGAGAAAGAGGGGAGATGGTGGTGCA
GGTGGTGGGACGAGGGCTGAGATGGAGTTTTTGAGACGCGCGGAGGAGAG
AGGGGTTAAGGTTGTTAGAGCGCCGAAGGGGATGAGTAGGAATAAGGGGA
ATGGGAGTCGGTGGTTGGGAAGGAATCAGTGTTTGGTTTGGACGGTCGAG
TGGATTCTGAGTGATGGGGAGAAGAGGATGAGAAATTGTTCGGAGACGGC
TCCTGTTGCGGATTCTTATGACCGCGTGGTTCCTGTTCCCAAGGAGGAGG
GGAGTGATGAGCAGGATCAGAAACAGACTGGGGATGAGAAGCCGGAGGGG
ACGTCCGAGTTGAAGACGGAGGAGCAACAACCACAGGATGCTCCCTCGAC
TACAGCCCCCGAGCCAGCCTCGACTACAGAACCTACACAGCCGACAGACG
CACCAACTGCTCAACCGGAAGCTTCAAATGCGACACCAATTACATCGGAC
TCGCTACCACTTACCCCCCACCGTGACCTCTACTTCTATCTTCATCGTCC
GCGGACAGCTACGAAACAGCCTGTTCTGGCCCCCCTGCCCCCAAAGATCT
CACTTGCTGCTGCTCTACGTGATCACATAGTCTTGGAGTTCCCTACTATC
TACGTACTGCCGGACTCACCTGATACTATACGAGCCCAGGAAGATGCCAA
GTACATCCTAGAGGAAGAGTACCTACGCACGCATCAGTCGCCGGAGGAGA
GCAGCGATGATACGGGGGATGCAGACGACGCTCAATTGCCTCCGGGTGCC
ATTGACCTCCGAGGCGTCGACGAGTCCAAGGTTCTGGAAGTCCTCCAGAA
GGATCTGTTCGAGCCTTCGGCAGCAGCGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001239-T1.utr5p1 | KJC3_001239-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001239-T1.utr3p1 | KJC3_001239-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007529 |
| DBxref | PFAM:PF04438 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3172979..3174696 + |
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