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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3179514..3180893+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001242-T1 ID=KJC3_001242-T1|Name=KJC3_001242-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1380bp|location=Sequence derived from alignment at ch1:3179514..3180893+ (Aspergillus niger KJC3)
AATCACCAACATCATCATTCTCTCAACCATCCTCATCATACAACTACTAC
CACTATCCCTAACAACCCCCTCCTACATATATCCTCACACCTATTCCTAC
TATTCATACCACCACTTCTCAAAATGAAACTCCTTCTCACCACTCTCATC
CTCCCATCCCTCCTCTCCACCCACTTGCTCTTCGCAACCGCAATATCCAT
ACCATCACCCCAAGAAACCCACCCCGACGCCAACTGCGACTGCTACATCA
CTTCCAGCTTCACCTCCAACTCCAACCTTACAGCCCCAACGTACTTCACG
CACTACAAATTCTGGGACTTCCGCAACGCACCCCTTCCCCAAAGCGGCCC
CGAAACAACCCAAACCAACCCGTCCAACCCGCACGACACCTCCACGTTGG
AAATCTACCCCCTAACCAAAACCCTCTTCTCGCACGACTGGCGCGCCCAA
ACCTGGGACCGCGAAGCAACAGACATCAGCCCTGTGCCGATGAAAAACAC
CGACGGGAATGTCTTCCTGCTCAAGCACCCATCCAGCACACCCAGGGACC
CTCGCTCATCATTCCTAGTGCTCCGCACCACTCGATTCCAGGACCACGCA
TCAACAGCCGAAATGGAAGGTCTATTCGGATACATATACCACTGTTCGCT
ACGACTACGAATGAGACTGATGTCTCGAGACGATATCGTAACGACAGCAG
CATCCACACACCCTAATAACCAACCAGGTTCGCAACCCGGATCACAATCC
AAAATCCCCCAAGGCAGCTGCGCCGGCATTTTCACCTACCGGTCGTCGAT
CTGCGAATCCGACATCGAAATACTGACCACCGAAGACAGCCACACAGTCC
ATTACGCCAATCAACCAGACTACGATCCTATCTCGGATACCTTGATCCCA
GGGGCAAGTTCGATCGTGAATCTGACCAAGCCGTGGACGTCGTGGACGAC
GCATCGACTGGACTGGGTGGCTGATATGTCGGCCTGGTATGCGGATGGGC
AGTTACAGAGTAAGAGTAACTATTCGGTGCCGGATCGGCCGAGTATCGTG
GCGATGAATCTGTGGAGTAATGGGGGCAACTGGTCAGGGGATATGAAGGT
CGGAGAGAGTGTGTTCATGGGGATTGAGTGGATTGAGTTGGTGTATAATG
TTACTAAGGCTGATCAGGATCTTCCTATTAAAGATCATCCGGGGCATAGG
GATCGGTATCATCGGGTTGGAGGGCTTGGTTCTGCTTCTGCTTCTTTTTC
TTCTTCGGCTTCTTCTGTGGGTGGGGATTTGGTGGATGAGGAAGATGTCG
AGCGGCAGATGGGGAAGGCTAAGGAGAAGAGCGATGGGTGTCAGAGACCG
TGCTGGATTGATCCGTGGCATCCTGTGTAG back to topCoding sequence (CDS) from alignment at ch1:3179514..3180893+ >KJC3_001242-T1 ID=KJC3_001242-T1|Name=KJC3_001242-T1|organism=Aspergillus niger KJC3|type=CDS|length=1257bp|location=Sequence derived from alignment at ch1:3179514..3180893+ (Aspergillus niger KJC3)
ATGAAACTCCTTCTCACCACTCTCATCCTCCCATCCCTCCTCTCCACCCA
CTTGCTCTTCGCAACCGCAATATCCATACCATCACCCCAAGAAACCCACC
CCGACGCCAACTGCGACTGCTACATCACTTCCAGCTTCACCTCCAACTCC
AACCTTACAGCCCCAACGTACTTCACGCACTACAAATTCTGGGACTTCCG
CAACGCACCCCTTCCCCAAAGCGGCCCCGAAACAACCCAAACCAACCCGT
CCAACCCGCACGACACCTCCACGTTGGAAATCTACCCCCTAACCAAAACC
CTCTTCTCGCACGACTGGCGCGCCCAAACCTGGGACCGCGAAGCAACAGA
CATCAGCCCTGTGCCGATGAAAAACACCGACGGGAATGTCTTCCTGCTCA
AGCACCCATCCAGCACACCCAGGGACCCTCGCTCATCATTCCTAGTGCTC
CGCACCACTCGATTCCAGGACCACGCATCAACAGCCGAAATGGAAGGTCT
ATTCGGATACATATACCACTGTTCGCTACGACTACGAATGAGACTGATGT
CTCGAGACGATATCGTAACGACAGCAGCATCCACACACCCTAATAACCAA
CCAGGTTCGCAACCCGGATCACAATCCAAAATCCCCCAAGGCAGCTGCGC
CGGCATTTTCACCTACCGGTCGTCGATCTGCGAATCCGACATCGAAATAC
TGACCACCGAAGACAGCCACACAGTCCATTACGCCAATCAACCAGACTAC
GATCCTATCTCGGATACCTTGATCCCAGGGGCAAGTTCGATCGTGAATCT
GACCAAGCCGTGGACGTCGTGGACGACGCATCGACTGGACTGGGTGGCTG
ATATGTCGGCCTGGTATGCGGATGGGCAGTTACAGAGTAAGAGTAACTAT
TCGGTGCCGGATCGGCCGAGTATCGTGGCGATGAATCTGTGGAGTAATGG
GGGCAACTGGTCAGGGGATATGAAGGTCGGAGAGAGTGTGTTCATGGGGA
TTGAGTGGATTGAGTTGGTGTATAATGTTACTAAGGCTGATCAGGATCTT
CCTATTAAAGATCATCCGGGGCATAGGGATCGGTATCATCGGGTTGGAGG
GCTTGGTTCTGCTTCTGCTTCTTTTTCTTCTTCGGCTTCTTCTGTGGGTG
GGGATTTGGTGGATGAGGAAGATGTCGAGCGGCAGATGGGGAAGGCTAAG
GAGAAGAGCGATGGGTGTCAGAGACCGTGCTGGATTGATCCGTGGCATCC
TGTGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001242-T1.utr5p1 | KJC3_001242-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-23) |
| Note | CAZy:GH16 |
| DBxref | InterPro:IPR013320 |
| DBxref | InterPro:IPR000757 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3179514..3180893 + |
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