|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3190261..3191456+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001245-T1 ID=KJC3_001245-T1|Name=KJC3_001245-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1196bp|location=Sequence derived from alignment at ch1:3190261..3191456+ (Aspergillus niger KJC3)
TAACCTTTTGTACAGAAAGCCACTTTACTTCGACATTCCTAACAACGCAG
GGGAATTGCTCAACACACACCGACCCAGAAAACTTTCCGCTGTGCTTTTG
ACAAGACAGTGGATCGTTGAGCAGCAATTATTACCGAGCCGCATTTCCTG
ACCGACAATTCCCACCCCTTCCGGAACGGCACTGTATACTCACATTCCTC
GAAATTCTCCTACTCCGCCATCATGTCAGGTACAATGTACGACGAGCACG
TTTATGCACCCTCACGGCGCCATTCAGTTGCTACTCCTCCCCCATCCATG
ACTCCACGACATAGTCGGACCCGCAGTCAAAGTGTCAGAGTTAGCAACGG
CACCGTGAGCACAAATACAAGCGTTTCGAGTGGGAGGATGTCGGAAGCTA
CAAACATTACACATCCACCTGCGTATTCCAAGAAGTTTGTTGTGGTTGGT
GATGGTGGATGTGGAAAGACGTGCCTTTTGATCAGTTATTCCCAAGGTTA
TTTCCCAGAGGTAGGTTCCAATCATGTCTGCGAACTTCCCGTATCGTTGC
TAAACTAATCACTGTGTATTTAGAAATACGTTCCTACTGTGTTCGAGAAC
TACATCACACAAACCACGCACCGAGCCTCAGGCAAGACGGTTGAACTAGC
CCTCTGGGATACTGCTGGACAGGAAGAATATGACCGGCTGCGTCCACTTT
CATATCCGGAGACGGACCTGTTGTTTGTTTGCTTTGCGATAGATTGCCCT
GCATCTCTGGAAAACGTTATGGACAAGGTAATTCCCAAATTCCCAGCCGT
TCCGCGACCAGTTATAGTAGCTAATACCGGCCGCAGTGGTATCCCGAAGT
TTTGCACTTTTGTCCCACTACCCCGCTCATTCTGGTTGGGCTGAAGTCAG
ATTTGCGCTCGAAGAGAACGTGTATTGAACTTCTAAAGACCCAGGGTCTA
ACGCCTGTGACGCCGGAACAAGGTGAGGCGGTGGCGCGCAGGATGAATGC
CTCTTACATAGAGTGTAGTAGCAAAGAAATGCGCGGCGTCGATGGCGTCT
TCTCCCTGGCAGTCGATACCGTTGTCTCCGCCGAGGAACAAGACTGGAAT
GACCGCCAAACGTCTACTACTCCCGGAAGCAAACCTAAAGTCGGTGGTGG
TGGCGGAGGAAAGAAGGTCAAAAAGCGTTCCTGCAAGATTCTGTAG back to topCoding sequence (CDS) from alignment at ch1:3190261..3191456+ >KJC3_001245-T1 ID=KJC3_001245-T1|Name=KJC3_001245-T1|organism=Aspergillus niger KJC3|type=CDS|length=2556bp|location=Sequence derived from alignment at ch1:3190261..3191456+ (Aspergillus niger KJC3)
ATGTCAGGTACAATGTACGACGAGCACGTTTATGCACCCTCACGGCGCCA
TTCAGTTGCTACTCCTCCCCCATCCATGACTCCACGACATAGTCGGACCC
GCAGTCAAAGTGTCAGAGTTAGCAACGGCACCGTGAGCACAAATACAAGC
GTTTCGAGTGGGAGGATGTCGGAAGCTACAAACATTACACATCCACCTGC
GTATTCCAAGAAGTTTGTTGTGGTTGGTGATGGTGGATGTGGAAAGACGT
GCCTTTTGATCAGTTATTCCCAAGGTTATTTCCCAGAGAAATACGTTCCT
ACTGTGTTCGAGAACTACATCACACAAACCACGCACCGAGCCTCAGGCAA
GACGGTTGAACTAGCCCTCTGGGATACTGCTGGACAGGAAGAATATGACC
GGCTGCGTCCACTTTCATATCCGGAGACGGACCTGTTGTTTGTTTGCTTT
GCGATAGATTGCCCTGCATCTCTGGAAAACGTTATGGACAAGTGGTATCC
CGAAGTTTTGCACTTTTGTCCCACTACCCCGCTCATTCTGGTTGGGCTGA
AGTCAGATTTGCGCTCGAAGAGAACGTGTATTGAACTTCTAAAGACCCAG
GGTCTAACGCCTGTGACGCCGGAACAAGGTGAGGCGGTGGCGCGCAGGAT
GAATGCCTCTTACATAGAGTGTAGTAGCAAAGAAATGCGCGGCGTCGATG
GCGTCTTCTCCCTGGCAGTCGATACCGTTGTCTCCGCCGAGGAACAAGAC
TGGAATGACCGCCAAACGTCTACTACTCCCGGAAGCAAACCTAAAGTCGG
TGGTGGTGGCGGAGGAAAGAAGGTCAAAAAGCGTTCCTGCAAGATTCTGT
AGATGTCAGGTACAATGTACGACGAGCACGTTTATGCACCCTCACGGCGC
CATTCAGTTGCTACTCCTCCCCCATCCATGACTCCACGACATAGTCGGAC
CCGCAGTCAAAGTGTCAGAGTTAGCAACGGCACCGTGAGCACAAATACAA
GCGTTTCGAGTGGGAGGATGTCGGAAGCTACAAACATTACACATCCACCT
GCGTATTCCAAGAAGTTTGTTGTGGTTGGTGATGGTGGATGTGGAAAGAC
GTGCCTTTTGATCAGTTATTCCCAAGGTTATTTCCCAGAGAAATACGTTC
CTACTGTGTTCGAGAACTACATCACACAAACCACGCACCGAGCCTCAGGC
AAGACGGTTGAACTAGCCCTCTGGGATACTGCTGGACAGGAAGAATATGA
CCGGCTGCGTCCACTTTCATATCCGGAGACGGACCTGTTGTTTGTTTGCT
TTGCGATAGATTGCCCTGCATCTCTGGAAAACGTTATGGACAAGTGGTAT
CCCGAAGTTTTGCACTTTTGTCCCACTACCCCGCTCATTCTGGTTGGGCT
GAAGTCAGATTTGCGCTCGAAGAGAACGTGTATTGAACTTCTAAAGACCC
AGGGTCTAACGCCTGTGACGCCGGAACAAGGTGAGGCGGTGGCGCGCAGG
ATGAATGCCTCTTACATAGAGTGTAGTAGCAAAGAAATGCGCGGCGTCGA
TGGCGTCTTCTCCCTGGCAGTCGATACCGTTGTCTCCGCCGAGGAACAAG
ACTGGAATGACCGCCAAACGTCTACTACTCCCGGAAGCAAACCTAAAGTC
GGTGGTGGTGGCGGAGGAAAGAAGGTCAAAAAGCGTTCCTGCAAGATTCT
GTAGATGTCAGGTACAATGTACGACGAGCACGTTTATGCACCCTCACGGC
GCCATTCAGTTGCTACTCCTCCCCCATCCATGACTCCACGACATAGTCGG
ACCCGCAGTCAAAGTGTCAGAGTTAGCAACGGCACCGTGAGCACAAATAC
AAGCGTTTCGAGTGGGAGGATGTCGGAAGCTACAAACATTACACATCCAC
CTGCGTATTCCAAGAAGTTTGTTGTGGTTGGTGATGGTGGATGTGGAAAG
ACGTGCCTTTTGATCAGTTATTCCCAAGGTTATTTCCCAGAGAAATACGT
TCCTACTGTGTTCGAGAACTACATCACACAAACCACGCACCGAGCCTCAG
GCAAGACGGTTGAACTAGCCCTCTGGGATACTGCTGGACAGGAAGAATAT
GACCGGCTGCGTCCACTTTCATATCCGGAGACGGACCTGTTGTTTGTTTG
CTTTGCGATAGATTGCCCTGCATCTCTGGAAAACGTTATGGACAAGTGGT
ATCCCGAAGTTTTGCACTTTTGTCCCACTACCCCGCTCATTCTGGTTGGG
CTGAAGTCAGATTTGCGCTCGAAGAGAACGTGTATTGAACTTCTAAAGAC
CCAGGGTCTAACGCCTGTGACGCCGGAACAAGGTGAGGCGGTGGCGCGCA
GGATGAATGCCTCTTACATAGAGTGTAGTAGCAAAGAAATGCGCGGCGTC
GATGGCGTCTTCTCCCTGGCAGTCGATACCGTTGTCTCCGCCGAGGAACA
AGACTGGAATGACCGCCAAACGTCTACTACTCCCGGAAGCAAACCTAAAG
TCGGTGGTGGTGGCGGAGGAAAGAAGGTCAAAAAGCGTTCCTGCAAGATT
CTGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007264 | small GTPase mediated signal transduction |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001245-T1.utr5p1 | KJC3_001245-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR003578 |
| DBxref | InterPro:IPR001806 |
| DBxref | InterPro:IPR005225 |
| DBxref | PFAM:PF08477 |
| DBxref | PFAM:PF00071 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3190261..3191456 + |
|
