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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3233840..3235207- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001258-T1 ID=KJC3_001258-T1|Name=KJC3_001258-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1368bp|location=Sequence derived from alignment at ch1:3233840..3235207- (Aspergillus niger KJC3)
GTACAATGCAGAGACTTGATATATCTATGCCACAAAGGATAATACTACTT
AGTGCTGGTCCATTGGCCTGGATCCTGAATAACCGAGGCAGCCAGCCAGA
CAGACAATCCCTTGACCCCGCTCGAATACTGACAGGGGCGAAAGCTAGTT
ATATGGTTGTCCAGCACTCGCCAGCGCCCGACGAAATCCTAACTCCTTTC
ACATCTCATTTAATAGGGAGTATTAAATACCGCAAACATCCATCATGGCC
TGCAAAGTATCAGGAACGGCGTTTATCACCGGGGGTGGAAATGGTAAGTA
AAAGTTTCCTCAAATAGTATAATGACCTAGCCCGATCGGGAAAATGTGCT
CAGAGGCTTCAGGCATTGGCAAGACCACCGCCTTCGCGCTTGCTCAAAAT
GGAATCGAAGCAGTATCTCTTCTGGATGTAAACGAGTCACTCCTCCAACG
CACTAAAGACGAGCTCGCTACCTCACATCCCCAAGTTGCAGTGGAACTCA
CGGTTGGAGACGTCTCCAAGGAGGCCTGCGTGGATGAAGCCGTGCGTCGC
ACTGTCGAGCGATTCGGTCGTATCGATATCTCGGTTCACTGCGCCGGGAT
TGTGGGGCAGCCGTCCGCGACCCATGAGCTGACGGCAGCAGAATGGCAGA
GGGTGATCGATATTAACCAGACCGGGGTGCTACTCTGCCAAAAGGCAGTG
ATACGCCAGATGCTGACACAGGAGTATGTTTCACTGGTCCACTTGAGGGG
AAGATAGCCGGCTAAGCGTATTGCAGATCGCGCGGTTTGCGTCTCGGTCG
GGGGACGATCGTGAATGTGGCTTCTATGTTTGGGGTAGTGGCTCCGGGAG
GTTGGTCAGGACTGTCGGCATATACAGCCTCCAAGCATGGTAAGTGGATG
CCTGGGATTGGTGGATGAATGTACCTAGATGGTTAATGGTTGCAGCTGTG
GTTGCTTTCTCAAAAATGGTCTGTTGTTCATGATGATTCCCCCAGACTGC
GAGACTAAGCCGGATTAGGACGCCAAAGCGTATATTCAACAGGAGATACG
CATTAACGCTATCTGTCCTGGGTAGGTGACTTGTTGGTCAGCATAAGATC
CACTGATTAGCTAACGATCCAGATACACGGACACCGATATGATCCGCACA
TATTGGGATGCGGGATACATGGAGCCAGATTCACAGCGAGTCGCCATTGG
CCGTAGGGCACAACCGGAGGAGATCGCCGATGCAGTCCTGTTTCTGGCCT
CCCCGATGAGCAGCTACATGGTAGGCTCCGCCTTGGTCGTGGATGGTGGT
TACACGGCTTGAGCGCCTTGAGCTCTGTGGCTTCTTGATCTACCTGCGTA
CAGCACTGAATTAATACC back to topCoding sequence (CDS) from alignment at ch1:3233840..3235207- >KJC3_001258-T1 ID=KJC3_001258-T1|Name=KJC3_001258-T1|organism=Aspergillus niger KJC3|type=CDS|length=4734bp|location=Sequence derived from alignment at ch1:3233840..3235207- (Aspergillus niger KJC3)
ATACACGGACACCGATATGATCCGCACATATTGGGATGCGGGATACATGG
AGCCAGATTCACAGCGAGTCGCCATTGGCCGTAGGGCACAACCGGAGGAG
ATCGCCGATGCAGTCCTGTTTCTGGCCTCCCCGATGAGCAGCTACATGGT
AGGCTCCGCCTTGGTCGTGGATGGTGGTTACACGGCTTGAGACGCCAAAG
CGTATATTCAACAGGAGATACGCATTAACGCTATCTGTCCTGGCTGTGGT
TGCTTTCTCAAAAATGATCGCGCGGTTTGCGTCTCGGTCGGGGGACGATC
GTGAATGTGGCTTCTATGTTTGGGGTAGTGGCTCCGGGAGGTTGGTCAGG
ACTGTCGGCATATACAGCCTCCAAGCATGGCATTGGCAAGACCACCGCCT
TCGCGCTTGCTCAAAATGGAATCGAAGCAGTATCTCTTCTGGATGTAAAC
GAGTCACTCCTCCAACGCACTAAAGACGAGCTCGCTACCTCACATCCCCA
AGTTGCAGTGGAACTCACGGTTGGAGACGTCTCCAAGGAGGCCTGCGTGG
ATGAAGCCGTGCGTCGCACTGTCGAGCGATTCGGTCGTATCGATATCTCG
GTTCACTGCGCCGGGATTGTGGGGCAGCCGTCCGCGACCCATGAGCTGAC
GGCAGCAGAATGGCAGAGGGTGATCGATATTAACCAGACCGGGGTGCTAC
TCTGCCAAAAGGCAGTGATACGCCAGATGCTGACACAGGAATGGCCTGCA
AAGTATCAGGAACGGCGTTTATCACCGGGGGTGGAAATGATACACGGACA
CCGATATGATCCGCACATATTGGGATGCGGGATACATGGAGCCAGATTCA
CAGCGAGTCGCCATTGGCCGTAGGGCACAACCGGAGGAGATCGCCGATGC
AGTCCTGTTTCTGGCCTCCCCGATGAGCAGCTACATGGTAGGCTCCGCCT
TGGTCGTGGATGGTGGTTACACGGCTTGAGACGCCAAAGCGTATATTCAA
CAGGAGATACGCATTAACGCTATCTGTCCTGGCTGTGGTTGCTTTCTCAA
AAATGATCGCGCGGTTTGCGTCTCGGTCGGGGGACGATCGTGAATGTGGC
TTCTATGTTTGGGGTAGTGGCTCCGGGAGGTTGGTCAGGACTGTCGGCAT
ATACAGCCTCCAAGCATGGCATTGGCAAGACCACCGCCTTCGCGCTTGCT
CAAAATGGAATCGAAGCAGTATCTCTTCTGGATGTAAACGAGTCACTCCT
CCAACGCACTAAAGACGAGCTCGCTACCTCACATCCCCAAGTTGCAGTGG
AACTCACGGTTGGAGACGTCTCCAAGGAGGCCTGCGTGGATGAAGCCGTG
CGTCGCACTGTCGAGCGATTCGGTCGTATCGATATCTCGGTTCACTGCGC
CGGGATTGTGGGGCAGCCGTCCGCGACCCATGAGCTGACGGCAGCAGAAT
GGCAGAGGGTGATCGATATTAACCAGACCGGGGTGCTACTCTGCCAAAAG
GCAGTGATACGCCAGATGCTGACACAGGAATGGCCTGCAAAGTATCAGGA
ACGGCGTTTATCACCGGGGGTGGAAATGATACACGGACACCGATATGATC
CGCACATATTGGGATGCGGGATACATGGAGCCAGATTCACAGCGAGTCGC
CATTGGCCGTAGGGCACAACCGGAGGAGATCGCCGATGCAGTCCTGTTTC
TGGCCTCCCCGATGAGCAGCTACATGGTAGGCTCCGCCTTGGTCGTGGAT
GGTGGTTACACGGCTTGAGACGCCAAAGCGTATATTCAACAGGAGATACG
CATTAACGCTATCTGTCCTGGCTGTGGTTGCTTTCTCAAAAATGATCGCG
CGGTTTGCGTCTCGGTCGGGGGACGATCGTGAATGTGGCTTCTATGTTTG
GGGTAGTGGCTCCGGGAGGTTGGTCAGGACTGTCGGCATATACAGCCTCC
AAGCATGGCATTGGCAAGACCACCGCCTTCGCGCTTGCTCAAAATGGAAT
CGAAGCAGTATCTCTTCTGGATGTAAACGAGTCACTCCTCCAACGCACTA
AAGACGAGCTCGCTACCTCACATCCCCAAGTTGCAGTGGAACTCACGGTT
GGAGACGTCTCCAAGGAGGCCTGCGTGGATGAAGCCGTGCGTCGCACTGT
CGAGCGATTCGGTCGTATCGATATCTCGGTTCACTGCGCCGGGATTGTGG
GGCAGCCGTCCGCGACCCATGAGCTGACGGCAGCAGAATGGCAGAGGGTG
ATCGATATTAACCAGACCGGGGTGCTACTCTGCCAAAAGGCAGTGATACG
CCAGATGCTGACACAGGAATGGCCTGCAAAGTATCAGGAACGGCGTTTAT
CACCGGGGGTGGAAATGATACACGGACACCGATATGATCCGCACATATTG
GGATGCGGGATACATGGAGCCAGATTCACAGCGAGTCGCCATTGGCCGTA
GGGCACAACCGGAGGAGATCGCCGATGCAGTCCTGTTTCTGGCCTCCCCG
ATGAGCAGCTACATGGTAGGCTCCGCCTTGGTCGTGGATGGTGGTTACAC
GGCTTGAGACGCCAAAGCGTATATTCAACAGGAGATACGCATTAACGCTA
TCTGTCCTGGCTGTGGTTGCTTTCTCAAAAATGATCGCGCGGTTTGCGTC
TCGGTCGGGGGACGATCGTGAATGTGGCTTCTATGTTTGGGGTAGTGGCT
CCGGGAGGTTGGTCAGGACTGTCGGCATATACAGCCTCCAAGCATGGCAT
TGGCAAGACCACCGCCTTCGCGCTTGCTCAAAATGGAATCGAAGCAGTAT
CTCTTCTGGATGTAAACGAGTCACTCCTCCAACGCACTAAAGACGAGCTC
GCTACCTCACATCCCCAAGTTGCAGTGGAACTCACGGTTGGAGACGTCTC
CAAGGAGGCCTGCGTGGATGAAGCCGTGCGTCGCACTGTCGAGCGATTCG
GTCGTATCGATATCTCGGTTCACTGCGCCGGGATTGTGGGGCAGCCGTCC
GCGACCCATGAGCTGACGGCAGCAGAATGGCAGAGGGTGATCGATATTAA
CCAGACCGGGGTGCTACTCTGCCAAAAGGCAGTGATACGCCAGATGCTGA
CACAGGAATGGCCTGCAAAGTATCAGGAACGGCGTTTATCACCGGGGGTG
GAAATGATACACGGACACCGATATGATCCGCACATATTGGGATGCGGGAT
ACATGGAGCCAGATTCACAGCGAGTCGCCATTGGCCGTAGGGCACAACCG
GAGGAGATCGCCGATGCAGTCCTGTTTCTGGCCTCCCCGATGAGCAGCTA
CATGGTAGGCTCCGCCTTGGTCGTGGATGGTGGTTACACGGCTTGAGACG
CCAAAGCGTATATTCAACAGGAGATACGCATTAACGCTATCTGTCCTGGC
TGTGGTTGCTTTCTCAAAAATGATCGCGCGGTTTGCGTCTCGGTCGGGGG
ACGATCGTGAATGTGGCTTCTATGTTTGGGGTAGTGGCTCCGGGAGGTTG
GTCAGGACTGTCGGCATATACAGCCTCCAAGCATGGCATTGGCAAGACCA
CCGCCTTCGCGCTTGCTCAAAATGGAATCGAAGCAGTATCTCTTCTGGAT
GTAAACGAGTCACTCCTCCAACGCACTAAAGACGAGCTCGCTACCTCACA
TCCCCAAGTTGCAGTGGAACTCACGGTTGGAGACGTCTCCAAGGAGGCCT
GCGTGGATGAAGCCGTGCGTCGCACTGTCGAGCGATTCGGTCGTATCGAT
ATCTCGGTTCACTGCGCCGGGATTGTGGGGCAGCCGTCCGCGACCCATGA
GCTGACGGCAGCAGAATGGCAGAGGGTGATCGATATTAACCAGACCGGGG
TGCTACTCTGCCAAAAGGCAGTGATACGCCAGATGCTGACACAGGAATGG
CCTGCAAAGTATCAGGAACGGCGTTTATCACCGGGGGTGGAAATGATACA
CGGACACCGATATGATCCGCACATATTGGGATGCGGGATACATGGAGCCA
GATTCACAGCGAGTCGCCATTGGCCGTAGGGCACAACCGGAGGAGATCGC
CGATGCAGTCCTGTTTCTGGCCTCCCCGATGAGCAGCTACATGGTAGGCT
CCGCCTTGGTCGTGGATGGTGGTTACACGGCTTGAGACGCCAAAGCGTAT
ATTCAACAGGAGATACGCATTAACGCTATCTGTCCTGGCTGTGGTTGCTT
TCTCAAAAATGATCGCGCGGTTTGCGTCTCGGTCGGGGGACGATCGTGAA
TGTGGCTTCTATGTTTGGGGTAGTGGCTCCGGGAGGTTGGTCAGGACTGT
CGGCATATACAGCCTCCAAGCATGGCATTGGCAAGACCACCGCCTTCGCG
CTTGCTCAAAATGGAATCGAAGCAGTATCTCTTCTGGATGTAAACGAGTC
ACTCCTCCAACGCACTAAAGACGAGCTCGCTACCTCACATCCCCAAGTTG
CAGTGGAACTCACGGTTGGAGACGTCTCCAAGGAGGCCTGCGTGGATGAA
GCCGTGCGTCGCACTGTCGAGCGATTCGGTCGTATCGATATCTCGGTTCA
CTGCGCCGGGATTGTGGGGCAGCCGTCCGCGACCCATGAGCTGACGGCAG
CAGAATGGCAGAGGGTGATCGATATTAACCAGACCGGGGTGCTACTCTGC
CAAAAGGCAGTGATACGCCAGATGCTGACACAGGAATGGCCTGCAAAGTA
TCAGGAACGGCGTTTATCACCGGGGGTGGAAATG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001258-T1.utr3p1 | KJC3_001258-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001258-T1.utr5p1 | KJC3_001258-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR002347 |
| DBxref | PFAM:PF08659 |
| DBxref | PFAM:PF13561 |
| DBxref | PFAM:PF00106 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3233840..3235207 - |
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