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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3271131..3273542- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001274-T1 ID=KJC3_001274-T1|Name=KJC3_001274-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2412bp|location=Sequence derived from alignment at ch1:3271131..3273542- (Aspergillus niger KJC3)
CACCGTGCCACCGACGTGTTCCCCGCGACACGTGCCGTCGTCTCCAGTTC
GGCGGTTGTTCTTCATCCCCGCTGTTGCCATTACGAGGTTGGGCCTTTTG
GTGTTTTGGGCAACATGCCAGAGGTCATCGATCTCCTCTCCTCCACCCCT
CCGCCCCCGTTAGAGCGACGTGAGCAGCTCTCCATCCGCAGAGCGCATTC
TCACCCGCCTGTCGTACCCGCCTCGGACTCCATCTTCTCCGACGAAATTG
ACCTCTCCGCATTTACCTACGATAACCCCATCGAGCAGCCCGCCAAACGA
CGGCGCTTGAGCCATGAGATCACACCCGTCAAAGATGTACCGCTTCCACC
AGCTAAGAACTCGCTGTTCCTCTTCTCCGATGACGACATAATCTTATCCT
CGGACGGTCCCGCCCCTACAAAACCTCCGGCCTGGAATGGAGAATCCGAC
CCTATTGTCTTCACCTCATCGGCGCCTGAACCCACTCATAATCTACCGGT
CAGACCAGCCATAAGCTCGCGTGCTGTAAACACTATCTCACTCGATGATG
ATGATGCTGGCAATTCCAGTGACACCCGCAGTAACAACCGACCCCGGAAA
GAGGCGATTCAAGTGTCCAGCGACCAATTGGATTTCCCGGATGTCGACGA
TTTACTTGATGTGGCCCAGCGAGTCGAAGCAAACGCATTTTCAAGTCGGA
CTGCGAATCTACTAGCAACCCTTGAAGACCGTTCCCGTGGCAGCAATGGC
GAATCTGCGTCCAGGTCGTCGAGAGGTCGGAGGATCCAGGATCAAAGCGA
TGATATAGAGGTTGAAGAGATGCCGCCACCGCGGAAGCCCCAGCGCAAAG
CAACCAAGGTTACAAGCGAAGAGAAGGAGGCTAAAGCCAGAGAGCGGGAG
GCGGCTAAGGCACAAAGGGAACACGACAGGCAACTTGAAAAGGAGCGCAA
GCAGAAAGCCAAGGAAGATAAAGCCCGCGAAAAGCAACTCGCAGCGGACA
TTGCTGAGGTCAACAAGCTCAAGGTGGACAAGAAGGATTCGACGCATGAG
ATGCTAATTGACCTCGCCTCTACATTTACCGACACAAGTCTCGGGAATCA
GACCTCGGAGCTTATGCGCCTTCTCAAAGTTGATCTCTCATTTTTCCCCA
GTACCATTCCGAATATCGTCAAGTGGCGTCGCAAGGTTCGGGCTACATAT
AACGACTCCCTTGGTCACTGGGAACCGTGCGCGCTTCACATCCGCGACGA
AGAGGAGCATGTCCTATGTTTGATAGCGGCTCAAGACTTTATCAATATGA
TCGTGGCCCCAACAACCGAACCAAGAAATACTATCAACGACCACGTTGAG
CGCCTGAAATTAGCCTACCCAAAGTCTCGACCGATCTATTTAATCGAAGG
CTTGACAAGTCTAATGCGGAAGAATAACAATGCACAAAACAGAGCCTACC
AAGCCGCTGTGCGACGACAATATGAAGACAGCTCTGCCCGTCCGTCAACG
CGGAGAAAGCAACAGCAGCCTGAACCGGTTACGCCTATAGACAGCGACAC
GGTTGAAGACGCTCTCCTCGATTTACAGGTGACCCATTCGTGCCTAATCC
ATCATACAAGCTCCCCTGCAGAGTCCGCGGAATGGATCAAGAACTTCACT
GAGTATATTTCCACTGTGCCCTATCGCCGGGAGCGGATGGACTTGAATGA
CTCCGCATTTTGTATGGATGTAGGACAAGTAAAGCCCGGCGAGAACCGAT
CCGACGCATTCGTGAAGATGCTTCAGGAGGTGAACCGAGTCACGGCGTCA
ATGGCATATGGCATTGCGACGCAATACCCAAGTGCGATGGATTTGGTAAA
TGCGATGCGGAAACATGGACCGGGGCTATTAGAAGACGTCAAGGTATATT
CCTTTACGGCTCCTCGCCTTATTCGATTATATCTTTGTCTTGGTACTGAC
CATTATACTTTCAGAAATCAGCAAACAAAAACGGCGCCCTCACCGATTCA
CGCATTGGTCCAGCCGTGAGCAGACGATTGTATAAAGTATTCATGGGAAT
GGATCCGACGTCGACTGATATTTGATCAACATCATCGGGGTCGGCGAACA
TTGACTCTCTTTTCTATTGGAGTTATATTTGCAGCGGTATTAGTGCATAT
AATCTGGGTCCGTTATTGGCGCGATAGGTACGCCTTATTGGTATATCCAC
CATTTTTATTGGCACGGATTGGCATCATATTACTTCAAACATCGTTATTG
GTATCGGTTTATCTTGGTTTTTATGTATACTCGGATTATGTATTGGCGGT
CTGCAGGAAAGCTTGTATGGATTTTACTAGTATCCCTTCACCAAATATGT
CTTGATACACAACTCCAGATAGATACATCCCTGGAAAATAATATTCGGCC
ATCAGATCAGGG back to topCoding sequence (CDS) from alignment at ch1:3271131..3273542- >KJC3_001274-T1 ID=KJC3_001274-T1|Name=KJC3_001274-T1|organism=Aspergillus niger KJC3|type=CDS|length=3780bp|location=Sequence derived from alignment at ch1:3271131..3273542- (Aspergillus niger KJC3)
AAATCAGCAAACAAAAACGGCGCCCTCACCGATTCACGCATTGGTCCAGC
CGTGAGCAGACGATTGTATAAAGTATTCATGGGAATGGATCCGACGTCGA
CTGATATTTGAATGCCAGAGGTCATCGATCTCCTCTCCTCCACCCCTCCG
CCCCCGTTAGAGCGACGTGAGCAGCTCTCCATCCGCAGAGCGCATTCTCA
CCCGCCTGTCGTACCCGCCTCGGACTCCATCTTCTCCGACGAAATTGACC
TCTCCGCATTTACCTACGATAACCCCATCGAGCAGCCCGCCAAACGACGG
CGCTTGAGCCATGAGATCACACCCGTCAAAGATGTACCGCTTCCACCAGC
TAAGAACTCGCTGTTCCTCTTCTCCGATGACGACATAATCTTATCCTCGG
ACGGTCCCGCCCCTACAAAACCTCCGGCCTGGAATGGAGAATCCGACCCT
ATTGTCTTCACCTCATCGGCGCCTGAACCCACTCATAATCTACCGGTCAG
ACCAGCCATAAGCTCGCGTGCTGTAAACACTATCTCACTCGATGATGATG
ATGCTGGCAATTCCAGTGACACCCGCAGTAACAACCGACCCCGGAAAGAG
GCGATTCAAGTGTCCAGCGACCAATTGGATTTCCCGGATGTCGACGATTT
ACTTGATGTGGCCCAGCGAGTCGAAGCAAACGCATTTTCAAGTCGGACTG
CGAATCTACTAGCAACCCTTGAAGACCGTTCCCGTGGCAGCAATGGCGAA
TCTGCGTCCAGGTCGTCGAGAGGTCGGAGGATCCAGGATCAAAGCGATGA
TATAGAGGTTGAAGAGATGCCGCCACCGCGGAAGCCCCAGCGCAAAGCAA
CCAAGGTTACAAGCGAAGAGAAGGAGGCTAAAGCCAGAGAGCGGGAGGCG
GCTAAGGCACAAAGGGAACACGACAGGCAACTTGAAAAGGAGCGCAAGCA
GAAAGCCAAGGAAGATAAAGCCCGCGAAAAGCAACTCGCAGCGGACATTG
CTGAGGTCAACAAGCTCAAGGTGGACAAGAAGGATTCGACGCATGAGATG
CTAATTGACCTCGCCTCTACATTTACCGACACAAGTCTCGGGAATCAGAC
CTCGGAGCTTATGCGCCTTCTCAAAGTTGATCTCTCATTTTTCCCCAGTA
CCATTCCGAATATCGTCAAGTGGCGTCGCAAGGTTCGGGCTACATATAAC
GACTCCCTTGGTCACTGGGAACCGTGCGCGCTTCACATCCGCGACGAAGA
GGAGCATGTCCTATGTTTGATAGCGGCTCAAGACTTTATCAATATGATCG
TGGCCCCAACAACCGAACCAAGAAATACTATCAACGACCACGTTGAGCGC
CTGAAATTAGCCTACCCAAAGTCTCGACCGATCTATTTAATCGAAGGCTT
GACAAGTCTAATGCGGAAGAATAACAATGCACAAAACAGAGCCTACCAAG
CCGCTGTGCGACGACAATATGAAGACAGCTCTGCCCGTCCGTCAACGCGG
AGAAAGCAACAGCAGCCTGAACCGGTTACGCCTATAGACAGCGACACGGT
TGAAGACGCTCTCCTCGATTTACAGGTGACCCATTCGTGCCTAATCCATC
ATACAAGCTCCCCTGCAGAGTCCGCGGAATGGATCAAGAACTTCACTGAG
TATATTTCCACTGTGCCCTATCGCCGGGAGCGGATGGACTTGAATGACTC
CGCATTTTGTATGGATGTAGGACAAGTAAAGCCCGGCGAGAACCGATCCG
ACGCATTCGTGAAGATGCTTCAGGAGGTGAACCGAGTCACGGCGTCAATG
GCATATGGCATTGCGACGCAATACCCAAGTGCGATGGATTTGGTAAATGC
GATGCGGAAACATGGACCGGGGCTATTAGAAGACGTCAAGAAATCAGCAA
ACAAAAACGGCGCCCTCACCGATTCACGCATTGGTCCAGCCGTGAGCAGA
CGATTGTATAAAGTATTCATGGGAATGGATCCGACGTCGACTGATATTTG
AATGCCAGAGGTCATCGATCTCCTCTCCTCCACCCCTCCGCCCCCGTTAG
AGCGACGTGAGCAGCTCTCCATCCGCAGAGCGCATTCTCACCCGCCTGTC
GTACCCGCCTCGGACTCCATCTTCTCCGACGAAATTGACCTCTCCGCATT
TACCTACGATAACCCCATCGAGCAGCCCGCCAAACGACGGCGCTTGAGCC
ATGAGATCACACCCGTCAAAGATGTACCGCTTCCACCAGCTAAGAACTCG
CTGTTCCTCTTCTCCGATGACGACATAATCTTATCCTCGGACGGTCCCGC
CCCTACAAAACCTCCGGCCTGGAATGGAGAATCCGACCCTATTGTCTTCA
CCTCATCGGCGCCTGAACCCACTCATAATCTACCGGTCAGACCAGCCATA
AGCTCGCGTGCTGTAAACACTATCTCACTCGATGATGATGATGCTGGCAA
TTCCAGTGACACCCGCAGTAACAACCGACCCCGGAAAGAGGCGATTCAAG
TGTCCAGCGACCAATTGGATTTCCCGGATGTCGACGATTTACTTGATGTG
GCCCAGCGAGTCGAAGCAAACGCATTTTCAAGTCGGACTGCGAATCTACT
AGCAACCCTTGAAGACCGTTCCCGTGGCAGCAATGGCGAATCTGCGTCCA
GGTCGTCGAGAGGTCGGAGGATCCAGGATCAAAGCGATGATATAGAGGTT
GAAGAGATGCCGCCACCGCGGAAGCCCCAGCGCAAAGCAACCAAGGTTAC
AAGCGAAGAGAAGGAGGCTAAAGCCAGAGAGCGGGAGGCGGCTAAGGCAC
AAAGGGAACACGACAGGCAACTTGAAAAGGAGCGCAAGCAGAAAGCCAAG
GAAGATAAAGCCCGCGAAAAGCAACTCGCAGCGGACATTGCTGAGGTCAA
CAAGCTCAAGGTGGACAAGAAGGATTCGACGCATGAGATGCTAATTGACC
TCGCCTCTACATTTACCGACACAAGTCTCGGGAATCAGACCTCGGAGCTT
ATGCGCCTTCTCAAAGTTGATCTCTCATTTTTCCCCAGTACCATTCCGAA
TATCGTCAAGTGGCGTCGCAAGGTTCGGGCTACATATAACGACTCCCTTG
GTCACTGGGAACCGTGCGCGCTTCACATCCGCGACGAAGAGGAGCATGTC
CTATGTTTGATAGCGGCTCAAGACTTTATCAATATGATCGTGGCCCCAAC
AACCGAACCAAGAAATACTATCAACGACCACGTTGAGCGCCTGAAATTAG
CCTACCCAAAGTCTCGACCGATCTATTTAATCGAAGGCTTGACAAGTCTA
ATGCGGAAGAATAACAATGCACAAAACAGAGCCTACCAAGCCGCTGTGCG
ACGACAATATGAAGACAGCTCTGCCCGTCCGTCAACGCGGAGAAAGCAAC
AGCAGCCTGAACCGGTTACGCCTATAGACAGCGACACGGTTGAAGACGCT
CTCCTCGATTTACAGGTGACCCATTCGTGCCTAATCCATCATACAAGCTC
CCCTGCAGAGTCCGCGGAATGGATCAAGAACTTCACTGAGTATATTTCCA
CTGTGCCCTATCGCCGGGAGCGGATGGACTTGAATGACTCCGCATTTTGT
ATGGATGTAGGACAAGTAAAGCCCGGCGAGAACCGATCCGACGCATTCGT
GAAGATGCTTCAGGAGGTGAACCGAGTCACGGCGTCAATGGCATATGGCA
TTGCGACGCAATACCCAAGTGCGATGGATTTGGTAAATGCGATGCGGAAA
CATGGACCGGGGCTATTAGAAGACGTCAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0004518 | nuclease activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001274-T1.utr3p1 | KJC3_001274-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001274-T1.utr5p1 | KJC3_001274-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR042530 |
| DBxref | InterPro:IPR006166 |
| DBxref | PFAM:PF02732 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| ch1 | supercontig | ch1:3271131..3273542 - |
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