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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3356080..3357870+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001302-T1 ID=KJC3_001302-T1|Name=KJC3_001302-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1791bp|location=Sequence derived from alignment at ch1:3356080..3357870+ (Aspergillus niger KJC3)
AGCTGACGATCGGTGGGCCTGCCGATCAACACTCCGCCCTGCTCAATCTT
ACGGCGTGAAAAAGGACACCCGGGAAGCTGCTTGCCGTTCTCCCCCTTTA
ATATATTCGCTGATGTCTCGCGGTTTATAAAGTTGGTGCTTCTCAGACAA
GACATACACTTACACATATACACACGATCCATCTACACTAGATCCAACGC
AAGCTGCTTCATCATGAGCGCTCCCTCAGATTCTCCGGCCCCTGCGCCTG
CTGTCGACACCTCACAGACCACCCCTTCTGACCCATCACCTTCGAATCCT
GCTGAGATCGCAGCTACCCCTGAGACTACCACTAAACCCGCAGAATCCAC
CGAGCAAGCCAAGGAAATCGACGAGTTTGAGTCTCAGTTGCCATTGTCCG
CCGCCGACGGCCTTATCCAGAAGCCTTTCCCCCGCCCCCTTGAATCGGCC
AAGCCGACACCCCCGGCAGAGCTCACCTCCGACCAACAAGCAAAATACAA
GGATGTCCTGAAGGCTGTGTCGGAATGGACCACTGTTCCGACAACGTCCG
CTAAGAATTCTCCCACCGAACCCATTACCGACAATGAGCGCATGTTCTTG
ACCCGCGAATGTCTGTTGCGGTACCTGCGCGCAACCAAATGGAATGTCTC
CGAAGCAATTGCGCGCCTCCAGCGCACGCTCACTTGGCGCCGTGAGTACG
GCGTTGAAAAGCTCACAGCCGACTACATTTCAGTTGAGAACGAGACGGGC
AAGCAGGTCATTCTGGGGTATGACATTCACGGGCGTCCATGTCTGTACCT
CTTGCCATCGAACCAGAACACGGAAACGAGCGACCGTCAGATCCAACACT
TGGTCTTCATGCTTGAGCGCGTCATCGACCTTATGGGCCCGGATCAGGAG
ACGCTGGCATTGATTGTCAACTACAAGGAGACGAAGTCGGGTCAGAATGC
GAGTATCGGCCAGGCCAAGCAGACCCTCAACTTTCTGCAGAACCACTACC
CAGAGAGAATGGGTCGCGCCCTTGTAATTAACAGTGAGTTGTCCCTATCT
TATGCAAGCGATAACCTCTGACCACGTCAGTGCCGTTCATGATCCTCGGT
TTCTTCAAGATCATCACTCCGTTCATCGATCCATTGACCCGCCAAAAACT
CAAGTTCAACGAGGACCTGGGTCAGCATGTGCCTCCGGGCCAGTTGATGA
AGTCCATGGGCGGTGAAGTCGAGTTCCGGTACGACCATTCGATCTACTGG
CCGACGCTCAACAAGCTTGCCGACCAGCGCAGAGCAGCATACAAGGAGCG
GTGGATTCAGGGCGGGAAACGTGTTGGTGAGATTGAGAACTATCTGAAGA
CGGGCACCAGCCCGAGTCTCTCCCAGACAGAGGGGGCGAATGGCACCGCG
TAGCCTACGGCATGAAACTTCCCATATTGTGCGACTTCCGGGTAAAAATT
GTCTTTCAGTGTTCTTCGAGCGTCGGCGATTGCATGGCTGTGGCATAAAG
CATAGATACGCCTTTATAATTCTTTGGCACCGTTCTCTTCGAGCTCTCGG
TTAGTCTTGTGGTGTAGTTAGACACATGGCCCAAATATAATCAGCAACCT
TGGCTTGTTATTCAACCTGTCGCGTTAATATTAAGGAGGCATTGATGTCG
GCGTAGGTAGAGACCGGAGCTAGTCAAGCGACTCGAAGCTTTCTCCGCAG
TGTCCTTGTCACGTGTGGGGATGGCGGGGCATTTTATGCCTCAGGCATGT
ATCCCACAACCTCCCACCAGTTATTGAAGCTGCAGCAATAC back to topCoding sequence (CDS) from alignment at ch1:3356080..3357870+ >KJC3_001302-T1 ID=KJC3_001302-T1|Name=KJC3_001302-T1|organism=Aspergillus niger KJC3|type=CDS|length=858bp|location=Sequence derived from alignment at ch1:3356080..3357870+ (Aspergillus niger KJC3)
ATGAGCGCTCCCTCAGATTCTCCGGCCCCTGCGCCTGCTGTCGACACCTC
ACAGACCACCCCTTCTGACCCATCACCTTCGAATCCTGCTGAGATCGCAG
CTACCCCTGAGACTACCACTAAACCCGCAGAATCCACCGAGCAAGCCAAG
GAAATCGACGAGTTTGAGTCTCAGTTGCCATTGTCCGCCGCCGACGGCCT
TATCCAGAAGCCTTTCCCCCGCCCCCTTGAATCGGCCAAGCCGACACCCC
CGGCAGAGCTCACCTCCGACCAACAAGCAAAATACAAGGATGTCCTGAAG
GCTGTGTCGGAATGGACCACTGTTCCGACAACGTCCGCTAAGAATTCTCC
CACCGAACCCATTACCGACAATGAGCGCATGTTCTTGACCCGCGAATGTC
TGTTGCGGTACCTGCGCGCAACCAAATGGAATGTCTCCGAAGCAATTGCG
CGCCTCCAGCGCACGCTCACTTGGCGCCGTGAGTACGGCGTTGAAAAGCT
CACAGCCGACTACATTTCAGTTGAGAACGAGACGGGCAAGCAGGTCATTC
TGGGGTATGACATTCACGGGCGTCCATGTCTGTACCTCTTGCCATCGAAC
CAGAACACGGAAACGAGCGACCGTCAGATCCAACACTTGGTCTTCATGCT
TGAGCGCGTCATCGACCTTATGGGCCCGGATCAGGAGACGCTGGCATTGA
TTGTCAACTACAAGGAGACGAAGTCGGGTCAGAATGCGAGTATCGGCCAG
GCCAAGCAGACCCTCAACTTTCTGCAGAACCACTACCCAGAGAGAATGGG
TCGCGCCCTTGTAATTAACAGTGAGTTGTCCCTATCTTATGCAAGCGATA
ACCTCTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001302-T1.utr5p1 | KJC3_001302-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001302-T1.utr3p1 | KJC3_001302-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036273 |
| DBxref | InterPro:IPR036865 |
| DBxref | InterPro:IPR001251 |
| DBxref | InterPro:IPR011074 |
| DBxref | PFAM:PF03765 |
| DBxref | PFAM:PF00650 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3356080..3357870 + |
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