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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3371543..3373600- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001308-T1 ID=KJC3_001308-T1|Name=KJC3_001308-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2058bp|location=Sequence derived from alignment at ch1:3371543..3373600- (Aspergillus niger KJC3)
ATGCACCTGCTAACCGAGCGAAAGGCTCCTCGAGCTCGCGGAATGGGCCG
ATCAGGACCCCGACGCCGCACGGGCTGTCTGACCTGCCGGGCACGTAAAG
TCCGTTGCGACGAGGCTAAACCCACGTGTGCCAATTGCACTCGCTTGCGA
CTGCAATGCACCTACAAAACCACCATTCAGACGGTCATCCCGCGACAACG
GCATGGCAGTCAAAGCTCAGGCATTGTCGCGAGCGCAGCAACGGCCCCCA
CCAGCACCGCCAGCACCACCTCATCCGACCGTCCAGACGTGAACTTCTTC
CACACCGTTCTCTGTAATGACCGACTTTCAGCATCGAATTCAGGATCCCC
GCAGCAGGCCGGTCCCAGCAATCGCCCCCAACAACAACAGCAGCAATCCC
TAGGTACGGATAATATCACCTCGTTTGATATCCTCAGTTTCATCGGCGAG
ATCACCTCCGACTTTCAGCAGAAACACCTCGATTTGACTACGAATGGCCT
GGCGGGGTTCCCAGCAGGCTCGGTTCCGGCGGCGATCGCGAACGAGGAAC
TCGACCAGAATGAACGGCCGATAAGTTGGGACGCGGGCTCAGTTTCAGTC
ATCCACGGTGATCGTTCAGAGCAAGGGTCTTCTTCCGATACAAGCGGTGG
TAGTAGTAGTGGTGGTGGTGGCCCTGGCCGGTTGACGTATGAGGATCGGT
TGTTTGCACATTTCGTGGAGGGGGACCCGCCGCCTACGATATTTGGGCCG
GTGGATTTGGATTGGGAGTACGTGCGTGCTAATGTTGTTGCACAGTCGCG
CGATAGTCGCGCAGTTCTACATGGGATTTATTGCTACGCGGAGATACATG
AGGCGTTGGTTGAGGGGAAAGCGTGGAAGTTGGCGTCGAGGTATCATCAG
CTGGCCTGTTCGGAAGTTCAGTCGTGCTTGCTGGGTGAAGTAGGGGAGAC
GGTACTGAAGAGGGTGTTCACTACGGTATTATTGTTGATGCTGGCAGAGG
TGAGTGTTTCTCAATTTTCTTCTGATAATTCAACCACGGCTGAAGGGCTT
ACGAAACAGCTCCTGTCTACCCCTGATCTATGGGGCTCAGGAACGTCCTT
TCTCCACTCTGCATATCTTCTGCTGCAGCGGTTTCACCACCGCACCAAGC
TGTGGACCAGTGTGAGCAATGTGATTGTGTCGTGGGTGTCATTGCTGGAT
GTCAAAGCACTGATAGCTGGCCGTGATGGCGATCCGCTGATTGACCTGGG
CAGCCTTTCATCCAAGGCAAGCACTACGTCTGAACTGGCCACGGAAGACA
AATGGGCCGACAATAGCGGCGACGAGGAGCCACCGAAGCCTGCATACCTT
ATGCGGGAAGCCATCACGGGCCCGGCCTTTCGCTTCTTCCTGCAAACACA
ACAGGTTATCCGACGGATCGTGTGCATCGACCTGCATCACCGCAGTCGTG
GCACTGTCAGTGACGAGTTTGAGGTGCTCCAGATAGCACACCAGGTCGGG
GCCGACCTCGAGACGCTCTGGAACCGGCGTCCGCGCGTGCTAGACGTCTA
CAGTACGCCTGAGGACCTCTTTAATACTCTACAGCCTGCTATCGCGATCG
AAATTTGCCGGACGTTCCGACAGTACATCGCCAACTTCTTAGCGATCTTT
ATCTATCTACACCGGGTTGCGTTCGCCATCTACCCACGGACTGACCGAGT
GCATCGCGCAGTGGATCGGATTATTCAGTTGGCGACTGCTGAGGTGGAGT
CCGGGAGCAATCAGCAACATCTGCCCGCCAGCTTTGTATGGCCGTTATTT
GTGGCTGGTCTCGAGGGATCGTTGGAGCAGCGAAGATGGATTGTGAAAGA
GATGCAACGGATTACTGGCAGCTGTAGTAGTCGCTGTCAGGATCCCGAGC
GCATCCGTGGAAGCTCTCGTACGGCGCGACATCCGCATGCGGGGAAAGCA
TTGCTACTGCTAGAGGAGATGACGCGACGACAAGATGCGTCGCGGACATG
GGCGGACTCGCGGTGCGTGCGACGGGAGCTATTTACTGACTTCTTCGTGA
TGATCTAG back to topCoding sequence (CDS) from alignment at ch1:3371543..3373600- >KJC3_001308-T1 ID=KJC3_001308-T1|Name=KJC3_001308-T1|organism=Aspergillus niger KJC3|type=CDS|length=3996bp|location=Sequence derived from alignment at ch1:3371543..3373600- (Aspergillus niger KJC3)
CTCCTGTCTACCCCTGATCTATGGGGCTCAGGAACGTCCTTTCTCCACTC
TGCATATCTTCTGCTGCAGCGGTTTCACCACCGCACCAAGCTGTGGACCA
GTGTGAGCAATGTGATTGTGTCGTGGGTGTCATTGCTGGATGTCAAAGCA
CTGATAGCTGGCCGTGATGGCGATCCGCTGATTGACCTGGGCAGCCTTTC
ATCCAAGGCAAGCACTACGTCTGAACTGGCCACGGAAGACAAATGGGCCG
ACAATAGCGGCGACGAGGAGCCACCGAAGCCTGCATACCTTATGCGGGAA
GCCATCACGGGCCCGGCCTTTCGCTTCTTCCTGCAAACACAACAGGTTAT
CCGACGGATCGTGTGCATCGACCTGCATCACCGCAGTCGTGGCACTGTCA
GTGACGAGTTTGAGGTGCTCCAGATAGCACACCAGGTCGGGGCCGACCTC
GAGACGCTCTGGAACCGGCGTCCGCGCGTGCTAGACGTCTACAGTACGCC
TGAGGACCTCTTTAATACTCTACAGCCTGCTATCGCGATCGAAATTTGCC
GGACGTTCCGACAGTACATCGCCAACTTCTTAGCGATCTTTATCTATCTA
CACCGGGTTGCGTTCGCCATCTACCCACGGACTGACCGAGTGCATCGCGC
AGTGGATCGGATTATTCAGTTGGCGACTGCTGAGGTGGAGTCCGGGAGCA
ATCAGCAACATCTGCCCGCCAGCTTTGTATGGCCGTTATTTGTGGCTGGT
CTCGAGGGATCGTTGGAGCAGCGAAGATGGATTGTGAAAGAGATGCAACG
GATTACTGGCAGCTGTAGTAGTCGCTGTCAGGATCCCGAGCGCATCCGTG
GAAGCTCTCGTACGGCGCGACATCCGCATGCGGGGAAAGCATTGCTACTG
CTAGAGGAGATGACGCGACGACAAGATGCGTCGCGGACATGGGCGGACTC
GCGGTGCGTGCGACGGGAGCTATTTACTGACTTCTTCGTGATGATCTAGA
TGCACCTGCTAACCGAGCGAAAGGCTCCTCGAGCTCGCGGAATGGGCCGA
TCAGGACCCCGACGCCGCACGGGCTGTCTGACCTGCCGGGCACGTAAAGT
CCGTTGCGACGAGGCTAAACCCACGTGTGCCAATTGCACTCGCTTGCGAC
TGCAATGCACCTACAAAACCACCATTCAGACGGTCATCCCGCGACAACGG
CATGGCAGTCAAAGCTCAGGCATTGTCGCGAGCGCAGCAACGGCCCCCAC
CAGCACCGCCAGCACCACCTCATCCGACCGTCCAGACGTGAACTTCTTCC
ACACCGTTCTCTGTAATGACCGACTTTCAGCATCGAATTCAGGATCCCCG
CAGCAGGCCGGTCCCAGCAATCGCCCCCAACAACAACAGCAGCAATCCCT
AGGTACGGATAATATCACCTCGTTTGATATCCTCAGTTTCATCGGCGAGA
TCACCTCCGACTTTCAGCAGAAACACCTCGATTTGACTACGAATGGCCTG
GCGGGGTTCCCAGCAGGCTCGGTTCCGGCGGCGATCGCGAACGAGGAACT
CGACCAGAATGAACGGCCGATAAGTTGGGACGCGGGCTCAGTTTCAGTCA
TCCACGGTGATCGTTCAGAGCAAGGGTCTTCTTCCGATACAAGCGGTGGT
AGTAGTAGTGGTGGTGGTGGCCCTGGCCGGTTGACGTATGAGGATCGGTT
GTTTGCACATTTCGTGGAGGGGGACCCGCCGCCTACGATATTTGGGCCGG
TGGATTTGGATTGGGAGTACGTGCGTGCTAATGTTGTTGCACAGTCGCGC
GATAGTCGCGCAGTTCTACATGGGATTTATTGCTACGCGGAGATACATGA
GGCGTTGGTTGAGGGGAAAGCGTGGAAGTTGGCGTCGAGGTATCATCAGC
TGGCCTGTTCGGAAGTTCAGTCGTGCTTGCTGGGTGAAGTAGGGGAGACG
GTACTGAAGAGGGTGTTCACTACGGTATTATTGTTGATGCTGGCAGAGCT
CCTGTCTACCCCTGATCTATGGGGCTCAGGAACGTCCTTTCTCCACTCTG
CATATCTTCTGCTGCAGCGGTTTCACCACCGCACCAAGCTGTGGACCAGT
GTGAGCAATGTGATTGTGTCGTGGGTGTCATTGCTGGATGTCAAAGCACT
GATAGCTGGCCGTGATGGCGATCCGCTGATTGACCTGGGCAGCCTTTCAT
CCAAGGCAAGCACTACGTCTGAACTGGCCACGGAAGACAAATGGGCCGAC
AATAGCGGCGACGAGGAGCCACCGAAGCCTGCATACCTTATGCGGGAAGC
CATCACGGGCCCGGCCTTTCGCTTCTTCCTGCAAACACAACAGGTTATCC
GACGGATCGTGTGCATCGACCTGCATCACCGCAGTCGTGGCACTGTCAGT
GACGAGTTTGAGGTGCTCCAGATAGCACACCAGGTCGGGGCCGACCTCGA
GACGCTCTGGAACCGGCGTCCGCGCGTGCTAGACGTCTACAGTACGCCTG
AGGACCTCTTTAATACTCTACAGCCTGCTATCGCGATCGAAATTTGCCGG
ACGTTCCGACAGTACATCGCCAACTTCTTAGCGATCTTTATCTATCTACA
CCGGGTTGCGTTCGCCATCTACCCACGGACTGACCGAGTGCATCGCGCAG
TGGATCGGATTATTCAGTTGGCGACTGCTGAGGTGGAGTCCGGGAGCAAT
CAGCAACATCTGCCCGCCAGCTTTGTATGGCCGTTATTTGTGGCTGGTCT
CGAGGGATCGTTGGAGCAGCGAAGATGGATTGTGAAAGAGATGCAACGGA
TTACTGGCAGCTGTAGTAGTCGCTGTCAGGATCCCGAGCGCATCCGTGGA
AGCTCTCGTACGGCGCGACATCCGCATGCGGGGAAAGCATTGCTACTGCT
AGAGGAGATGACGCGACGACAAGATGCGTCGCGGACATGGGCGGACTCGC
GGTGCGTGCGACGGGAGCTATTTACTGACTTCTTCGTGATGATCTAGATG
CACCTGCTAACCGAGCGAAAGGCTCCTCGAGCTCGCGGAATGGGCCGATC
AGGACCCCGACGCCGCACGGGCTGTCTGACCTGCCGGGCACGTAAAGTCC
GTTGCGACGAGGCTAAACCCACGTGTGCCAATTGCACTCGCTTGCGACTG
CAATGCACCTACAAAACCACCATTCAGACGGTCATCCCGCGACAACGGCA
TGGCAGTCAAAGCTCAGGCATTGTCGCGAGCGCAGCAACGGCCCCCACCA
GCACCGCCAGCACCACCTCATCCGACCGTCCAGACGTGAACTTCTTCCAC
ACCGTTCTCTGTAATGACCGACTTTCAGCATCGAATTCAGGATCCCCGCA
GCAGGCCGGTCCCAGCAATCGCCCCCAACAACAACAGCAGCAATCCCTAG
GTACGGATAATATCACCTCGTTTGATATCCTCAGTTTCATCGGCGAGATC
ACCTCCGACTTTCAGCAGAAACACCTCGATTTGACTACGAATGGCCTGGC
GGGGTTCCCAGCAGGCTCGGTTCCGGCGGCGATCGCGAACGAGGAACTCG
ACCAGAATGAACGGCCGATAAGTTGGGACGCGGGCTCAGTTTCAGTCATC
CACGGTGATCGTTCAGAGCAAGGGTCTTCTTCCGATACAAGCGGTGGTAG
TAGTAGTGGTGGTGGTGGCCCTGGCCGGTTGACGTATGAGGATCGGTTGT
TTGCACATTTCGTGGAGGGGGACCCGCCGCCTACGATATTTGGGCCGGTG
GATTTGGATTGGGAGTACGTGCGTGCTAATGTTGTTGCACAGTCGCGCGA
TAGTCGCGCAGTTCTACATGGGATTTATTGCTACGCGGAGATACATGAGG
CGTTGGTTGAGGGGAAAGCGTGGAAGTTGGCGTCGAGGTATCATCAGCTG
GCCTGTTCGGAAGTTCAGTCGTGCTTGCTGGGTGAAGTAGGGGAGACGGT
ACTGAAGAGGGTGTTCACTACGGTATTATTGTTGATGCTGGCAGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3371543..3373600 - |
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