You are here

Home

KJC3_001309-T1, KJC3_001309-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001309-T1
Unique NameKJC3_001309-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3373803..3375768-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001309-T1 ID=KJC3_001309-T1|Name=KJC3_001309-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1966bp|location=Sequence derived from alignment at ch1:3373803..3375768- (Aspergillus niger KJC3)
GGCATCCATAACTATCCGTCGGTCCCTTCGGCCGGCAATCATAATTTAAT
TCCTCGTCTTCCACCGAATCCAAATTTATCGTCCAAGCATGCAACTTTCG
GGAATCTAAGTATCCATCAAAAGTCCTATAATGGCAGAATCACCTTTACT
CCAGGCTCACACAGGGCCGCGAACATCTTGCGATTCGCAAGACCCGGCAG
AGCCATTTCTACCCCGACCCTCGGCCCCCGGGTCCTCAGTGCATCAGAAC
CCAACCCGAATTCTGTTCCGGTTGTATATTTCCCATTTTCTATCAACATG
GAACTCGCGAATGTTCGAGTTTGGGGCCGTCTTGTTCCTGGCGACTATCT
TCCCGGGAACACTGCGGTATACTTCGGTTTATGCTCTGGTTCGATCGCTG
TCTGCGGTGGTCCTGTCATCATGGTTGGGATCGGTGGTGGACCGAGCGAA
TAGGTTGAGAGCGATTCGGCATTCCATTAGTATGTTGGAGTAGCAAGCGC
AGAGGGAGATATGGTTATGGACTGACACCGTCTAGTATGGCAGAGAATCC
CTGTAGCTGCCTCGTGCGCATGCTTTACGGCTCTCCTGACCCCGAGTACA
ACGGCGTTTACCTCGCTCGTGTTCGCGGGTACGGTTTTGCTCGCTTGTGT
GGAGAAGCTCGCTGCTACTGCGAACTGTGTTGCTGTTGAAAGGGATTGGG
TGAGTTGACCGTTCTCCTGCTATGATACCTGGCTAATTCGAAAAGGCCAT
TGTTGTGTCGGATGCCCTAGATATTCCTCGACAAGGTATGCTACGCATTG
CTGCCTGCCATAGTCAGTACTAATTGAGCAGACCTCAATGCGTCTATGAG
ACGGATAGACCTGTTTTGCAAACTCTTAGCTCCGGTGGTCATCTCCGTGG
TTGATGGGCTGTCGACTAAGATAGCCATATGGACGGTCTTGGTTGTAAAT
GTGTCTTGTGTCGTCGTTGAATACATTGCAATTGCTCAGGTATTATCTCC
CCAGGTTGGAGACGTCTGTATGCTTACAAAGTCCAGGTGTATACGTCCAT
TCCTGAACTCAAGCGTTGTCAGGATGAAAGCAGTGAGATCGGAGATGGAC
CTGGGCTTGAGCCGCAAGATGGGGGCAGTGCGCCAACCGCAGCTCGTCGG
ATAGCGCAGTATAGCAGAAAGGCTCTTGCTCCGTGGCGAGAGTACGTGGC
TAGCTCTGTGTTCCTAGCCTCCCTTGCCTTGAGCTTACTTTATCTCACGG
TGCTTTCTTTCGGTACTACCACGGTTACGTACCTGCTACATACTGGGTTC
ACCCCGCTGCAGGTCAGCGGGATGAGAATCGGCGCTGTCATTGCAGAGCT
GTCGGGGACATGGGCGGCACCCTTTATCACGGGAAGGATTGGGCCTATCC
GGTCAGGCCTGTGGTTTTTGAACTGGCAGTTTGCCTGTCTGGCAGCTGCA
GTGGCGGCCTTTGCTTTCCTCGACAACCAGTCTCAAGTGGTGGCTATTAG
CCTGATTGTCGGAGTAGCTCTCAGTCGAATTGGTCTCTGGGGCTTTGATC
TGTCGGTGCAATTCCTAGTCCAAGAGGTAAGTCCTACTGTTCGAACTGAA
TCTAATGATCAAGCTCTTACTATGATAGGGTGTGGACGAACGTGCTCGCG
CGCGGTTCTCATCCACGGAAATGGCTCTCCAAAACATCTTTGAGCTTCTA
TCCTTTGCGACGACCATTGCATTCCCCCTTCCTGAACAATTCAAATACCC
AGTATTCATCAGTTACGGGGGCATTGCGATAGCGGCCATTTGTTTTGCGA
CGTATGTGCGGAAGGAACGGGGACATTTGCTGCATACATCCAAATGTTTT
GGGGGAGACAAGAAGCGGATCGTCCCTGACCCGCAGGATGTCCTCATCCG
GCGCGCATAATGAGATAGAATGCATGTAGTGCCATGAGATATGAATCAAA
AATGCTATCTGACGTA
back to top

Coding sequence (CDS) from alignment at ch1:3373803..3375768-

>KJC3_001309-T1 ID=KJC3_001309-T1|Name=KJC3_001309-T1|organism=Aspergillus niger KJC3|type=CDS|length=2898bp|location=Sequence derived from alignment at ch1:3373803..3375768- (Aspergillus niger KJC3)
GGTGTGGACGAACGTGCTCGCGCGCGGTTCTCATCCACGGAAATGGCTCT
CCAAAACATCTTTGAGCTTCTATCCTTTGCGACGACCATTGCATTCCCCC
TTCCTGAACAATTCAAATACCCAGTATTCATCAGTTACGGGGGCATTGCG
ATAGCGGCCATTTGTTTTGCGACGTATGTGCGGAAGGAACGGGGACATTT
GCTGCATACATCCAAATGTTTTGGGGGAGACAAGAAGCGGATCGTCCCTG
ACCCGCAGGATGTCCTCATCCGGCGCGCATAAGTGTATACGTCCATTCCT
GAACTCAAGCGTTGTCAGGATGAAAGCAGTGAGATCGGAGATGGACCTGG
GCTTGAGCCGCAAGATGGGGGCAGTGCGCCAACCGCAGCTCGTCGGATAG
CGCAGTATAGCAGAAAGGCTCTTGCTCCGTGGCGAGAGTACGTGGCTAGC
TCTGTGTTCCTAGCCTCCCTTGCCTTGAGCTTACTTTATCTCACGGTGCT
TTCTTTCGGTACTACCACGGTTACGTACCTGCTACATACTGGGTTCACCC
CGCTGCAGGTCAGCGGGATGAGAATCGGCGCTGTCATTGCAGAGCTGTCG
GGGACATGGGCGGCACCCTTTATCACGGGAAGGATTGGGCCTATCCGGTC
AGGCCTGTGGTTTTTGAACTGGCAGTTTGCCTGTCTGGCAGCTGCAGTGG
CGGCCTTTGCTTTCCTCGACAACCAGTCTCAAGTGGTGGCTATTAGCCTG
ATTGTCGGAGTAGCTCTCAGTCGAATTGGTCTCTGGGGCTTTGATCTGTC
GGTGCAATTCCTAGTCCAAGAGATGAGACGGATAGACCTGTTTTGCAAAC
TCTTAGCTCCGGTGGTCATCTCCGTGGTTGATGGGCTGTCGACTAAGATA
GCCATATGGACGGTCTTGGTTGTAAATGTGTCTTGTGTCGTCGTTGAATA
CATTGCAATTGCTCAGGGTGTGGACGAACGTGCTCGCGCGCGGTTCTCAT
CCACGGAAATGGCTCTCCAAAACATCTTTGAGCTTCTATCCTTTGCGACG
ACCATTGCATTCCCCCTTCCTGAACAATTCAAATACCCAGTATTCATCAG
TTACGGGGGCATTGCGATAGCGGCCATTTGTTTTGCGACGTATGTGCGGA
AGGAACGGGGACATTTGCTGCATACATCCAAATGTTTTGGGGGAGACAAG
AAGCGGATCGTCCCTGACCCGCAGGATGTCCTCATCCGGCGCGCATAAGT
GTATACGTCCATTCCTGAACTCAAGCGTTGTCAGGATGAAAGCAGTGAGA
TCGGAGATGGACCTGGGCTTGAGCCGCAAGATGGGGGCAGTGCGCCAACC
GCAGCTCGTCGGATAGCGCAGTATAGCAGAAAGGCTCTTGCTCCGTGGCG
AGAGTACGTGGCTAGCTCTGTGTTCCTAGCCTCCCTTGCCTTGAGCTTAC
TTTATCTCACGGTGCTTTCTTTCGGTACTACCACGGTTACGTACCTGCTA
CATACTGGGTTCACCCCGCTGCAGGTCAGCGGGATGAGAATCGGCGCTGT
CATTGCAGAGCTGTCGGGGACATGGGCGGCACCCTTTATCACGGGAAGGA
TTGGGCCTATCCGGTCAGGCCTGTGGTTTTTGAACTGGCAGTTTGCCTGT
CTGGCAGCTGCAGTGGCGGCCTTTGCTTTCCTCGACAACCAGTCTCAAGT
GGTGGCTATTAGCCTGATTGTCGGAGTAGCTCTCAGTCGAATTGGTCTCT
GGGGCTTTGATCTGTCGGTGCAATTCCTAGTCCAAGAGATGAGACGGATA
GACCTGTTTTGCAAACTCTTAGCTCCGGTGGTCATCTCCGTGGTTGATGG
GCTGTCGACTAAGATAGCCATATGGACGGTCTTGGTTGTAAATGTGTCTT
GTGTCGTCGTTGAATACATTGCAATTGCTCAGGGTGTGGACGAACGTGCT
CGCGCGCGGTTCTCATCCACGGAAATGGCTCTCCAAAACATCTTTGAGCT
TCTATCCTTTGCGACGACCATTGCATTCCCCCTTCCTGAACAATTCAAAT
ACCCAGTATTCATCAGTTACGGGGGCATTGCGATAGCGGCCATTTGTTTT
GCGACGTATGTGCGGAAGGAACGGGGACATTTGCTGCATACATCCAAATG
TTTTGGGGGAGACAAGAAGCGGATCGTCCCTGACCCGCAGGATGTCCTCA
TCCGGCGCGCATAAGTGTATACGTCCATTCCTGAACTCAAGCGTTGTCAG
GATGAAAGCAGTGAGATCGGAGATGGACCTGGGCTTGAGCCGCAAGATGG
GGGCAGTGCGCCAACCGCAGCTCGTCGGATAGCGCAGTATAGCAGAAAGG
CTCTTGCTCCGTGGCGAGAGTACGTGGCTAGCTCTGTGTTCCTAGCCTCC
CTTGCCTTGAGCTTACTTTATCTCACGGTGCTTTCTTTCGGTACTACCAC
GGTTACGTACCTGCTACATACTGGGTTCACCCCGCTGCAGGTCAGCGGGA
TGAGAATCGGCGCTGTCATTGCAGAGCTGTCGGGGACATGGGCGGCACCC
TTTATCACGGGAAGGATTGGGCCTATCCGGTCAGGCCTGTGGTTTTTGAA
CTGGCAGTTTGCCTGTCTGGCAGCTGCAGTGGCGGCCTTTGCTTTCCTCG
ACAACCAGTCTCAAGTGGTGGCTATTAGCCTGATTGTCGGAGTAGCTCTC
AGTCGAATTGGTCTCTGGGGCTTTGATCTGTCGGTGCAATTCCTAGTCCA
AGAGATGAGACGGATAGACCTGTTTTGCAAACTCTTAGCTCCGGTGGTCA
TCTCCGTGGTTGATGGGCTGTCGACTAAGATAGCCATATGGACGGTCTTG
GTTGTAAATGTGTCTTGTGTCGTCGTTGAATACATTGCAATTGCTCAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0034755iron ion transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005381iron ion transmembrane transporter activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001309KJC3_001309Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001309-T1KJC3_001309-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001309-T1.cdsKJC3_001309-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001309-T1.utr3p1KJC3_001309-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001309-T1.exon5KJC3_001309-T1.exon5Aspergillus niger KJC3exon
KJC3_001309-T1.exon4KJC3_001309-T1.exon4Aspergillus niger KJC3exon
KJC3_001309-T1.exon3KJC3_001309-T1.exon3Aspergillus niger KJC3exon
KJC3_001309-T1.exon2KJC3_001309-T1.exon2Aspergillus niger KJC3exon
KJC3_001309-T1.exon1KJC3_001309-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001309-T1.utr5p3KJC3_001309-T1.utr5p3Aspergillus niger KJC3five_prime_UTR
KJC3_001309-T1.utr5p2KJC3_001309-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_001309-T1.utr5p1KJC3_001309-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036259
DBxrefInterPro:IPR009716
DBxrefPFAM:PF06963
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3373803..3375768 -
Powered by Drupal