You are here

Home

KJC3_001312-T1, KJC3_001312-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001312-T1
Unique NameKJC3_001312-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3379820..3382170+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001312-T1 ID=KJC3_001312-T1|Name=KJC3_001312-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2351bp|location=Sequence derived from alignment at ch1:3379820..3382170+ (Aspergillus niger KJC3)
ATCTCTTCCTTCCACTCCACCACTTTATCCCCCCGTCCTCCCCCAGTCAC
TCGTCTCGCCATGGCTCATTGCGAGCGGGCCTCCAAGCCCCTGCTCCAAT
GCCTGCAGAAGACCTACACAAAGGGTCTTCCAGGCCTCCAGCTACAGTCC
ACCCGCGCCTTTCAGTCCACCGCTCTGGCTCGCGAGGAAGCCCAGACTGA
GGCCAAGAGCGCTCCCTTCCACAAGGCGCCTGATCCGGCCCTAGTAACGA
GTCCCCGGCTGGAACGGAGGTTGTTACGCCAGGGAATCGCCCCCGTCGGA
TCTCGTCGACGTCGAGCTGCCCTCCAGGGCTCATCCAACATTCCCTTCGA
GCAGCTGCCCTTCCAATGTTTCCAGGAGGCACGCAAGGTTTTGATCGCAG
ACCGGGAAGAGAAGGTGCGCGATATCCAGTCGATGAGCGAGAAGATTGCC
AGACTTCAGGCCCTTCCTACCGAGGAGGCCGGCGGCTTGCAGGTCAAGAA
ATCCAAGCTCCGGGCCATGGAGCTCCATCTGGAGCACCTCAAGATCCTTG
CGGATGTCAACGACCCGCTGGTCAAGAAGAAGTTTGAGGATGGGCAAGGT
GAGACAACACATTCTACAAATTGCCTTCATCACCGCATCCTAACCGACCT
CGTCTAGGTGACCTCAGCAAGCCCATCTACCGCTACCTGGCCGATCGGAA
ATGGAGGGAATACCGTCGCAAGATCCTCGTCCAAAGAATCACGCAAATGA
AGGTGATTCCCGACGTCCTTCCTCACTGCGACCCTATCGTGGACACCAAG
CTCTACTTCAACCGCAGCCAGGTACAGCCTGGAGAATACGTCAACGCCAA
GGTCAGCACGACGGCACCTAAACTTGACGTGCAGCTCTTCGAGGGCGGCG
AGAAGCTCGTCACCATCGCCGTGGTCGACTCCGATGTTCCCAACGTTGAG
AAGGATGGATTCGATTTCAAGATGCACTACCTGGCTGTCAACGTCCCCAT
CTCGGCCACGAACACCAAGGTCGACCTGGCCCAGCTGTCGGCTGAGTCGC
AGGTTGTCCTGCCCTGGGAGCCCCCTGTAGCTCAGAAGGGAAGCCCCTAC
CACCGACTGTCTCTGTTCATTCTCGAACAGAAGGACTCCAAGCCATTGGA
CTTTGCTGCCGTCAAGGCGAAGGAGACGAACCGCGAGAACCTGCTGCCCC
GCACCCTGCAGGCCCGGTACCACCTGAAGGCGATTGGCGCGCACCTGTTC
CGCACGCAATGGGACGAGACGACGTATGAGGTGATGAAGCAGATTGGCTT
CCCCGAGGCGAACATGGAGCTCCGTCGGAAGCGGGTCGAGCCTCTTCCTT
ACAAGAGAAGAAACCCATCCACGTTCCGGTAAACCAGCCTCTTTTTTCCT
TCTGTTCAACTTTTTTTGGCCTTAGATTTGTATTGTACAAGAGAAGATGT
ATGAATATGCACAAATTCCACCAACTCCAGACTCCCATGCCGTATACCTG
AAGGGTATCTATCTATCCACCTTTTATCCATCAAGCACATATGATACAAT
ATTCACTCCGACAAATCCGCCGTCTCCAACGTATTCTTCACCCACTCAAA
CTTATGCAACGGCCACACCCGCGCGATAATCTTCCCATTTATAAGCGCCA
TCGGTATAGGGCCATAATTCCTGGAATCCCTCGACCACGGCAAATTATCC
CCAGCAAGATAGACATGCCCTTCAGGAACCTGCAACCAAACAAAAACCAC
ATTAGCTTAACCCCAACCCCAACCCTCAAATCGAAAGCAATAAAAAGGAA
GATTAACATACCCTGATCATCTCCCCCTCCCCACCAACCTCCCTACTAAA
CGGCAAATCCCTACACACAAAATCCCCCGGCAACCCAATGACCCTCTTCG
CCCCATTCACCCCCAAAAACGTCGGATGATAGAACCGCACCACGTCGCCA
ACCTGAATCCCCCGGCCGTGCTTGTGCACTCGCGATATGAGAAGGTAGTC
GCCTCGCGGACTGAAAGTCGGGTACATCGATGGACCTTCGCTCAGTTGGA
CAGTGATCAGGTGTTCCCAGATTAGTGTGCATGCGCAGAACACTCCCAGG
CTGTTGAGGCCGAAGCGGAATAGATGGCCCGGGGTGCTGCGTTTTAGGGT
GTAGCGGAGGAAGCGGTCCATTTTTGTAGATTCTTGTGTTTTTTCTTTGT
GATTGGTGTTATTGGGGTATGGGGTTGGGGGGCATGGTAGTCGTTCAATT
CGTTTGTTAGGTTATTATTGCGATTTGTATGGAAACTAGTTTGGTTTGCT
TGGTATGACGGCGGAGAGCTTCGGAGGTGGTAGGTCATGTGACTGGGTCG
G
back to top

Coding sequence (CDS) from alignment at ch1:3379820..3382170+

>KJC3_001312-T1 ID=KJC3_001312-T1|Name=KJC3_001312-T1|organism=Aspergillus niger KJC3|type=CDS|length=2526bp|location=Sequence derived from alignment at ch1:3379820..3382170+ (Aspergillus niger KJC3)
ATGGCTCATTGCGAGCGGGCCTCCAAGCCCCTGCTCCAATGCCTGCAGAA
GACCTACACAAAGGGTCTTCCAGGCCTCCAGCTACAGTCCACCCGCGCCT
TTCAGTCCACCGCTCTGGCTCGCGAGGAAGCCCAGACTGAGGCCAAGAGC
GCTCCCTTCCACAAGGCGCCTGATCCGGCCCTAGTAACGAGTCCCCGGCT
GGAACGGAGGTTGTTACGCCAGGGAATCGCCCCCGTCGGATCTCGTCGAC
GTCGAGCTGCCCTCCAGGGCTCATCCAACATTCCCTTCGAGCAGCTGCCC
TTCCAATGTTTCCAGGAGGCACGCAAGGTTTTGATCGCAGACCGGGAAGA
GAAGGTGCGCGATATCCAGTCGATGAGCGAGAAGATTGCCAGACTTCAGG
CCCTTCCTACCGAGGAGGCCGGCGGCTTGCAGGTCAAGAAATCCAAGCTC
CGGGCCATGGAGCTCCATCTGGAGCACCTCAAGATCCTTGCGGATGTCAA
CGACCCGCTGGTCAAGAAGAAGTTTGAGGATGGGCAAGGTGACCTCAGCA
AGCCCATCTACCGCTACCTGGCCGATCGGAAATGGAGGGAATACCGTCGC
AAGATCCTCGTCCAAAGAATCACGCAAATGAAGGTGATTCCCGACGTCCT
TCCTCACTGCGACCCTATCGTGGACACCAAGCTCTACTTCAACCGCAGCC
AGGTACAGCCTGGAGAATACGTCAACGCCAAGGTCAGCACGACGGCACCT
AAACTTGACGTGCAGCTCTTCGAGGGCGGCGAGAAGCTCGTCACCATCGC
CGTGGTCGACTCCGATGTTCCCAACGTTGAGAAGGATGGATTCGATTTCA
AGATGCACTACCTGGCTGTCAACGTCCCCATCTCGGCCACGAACACCAAG
GTCGACCTGGCCCAGCTGTCGGCTGAGTCGCAGGTTGTCCTGCCCTGGGA
GCCCCCTGTAGCTCAGAAGGGAAGCCCCTACCACCGACTGTCTCTGTTCA
TTCTCGAACAGAAGGACTCCAAGCCATTGGACTTTGCTGCCGTCAAGGCG
AAGGAGACGAACCGCGAGAACCTGCTGCCCCGCACCCTGCAGGCCCGGTA
CCACCTGAAGGCGATTGGCGCGCACCTGTTCCGCACGCAATGGGACGAGA
CGACGTATGAGGTGATGAAGCAGATTGGCTTCCCCGAGGCGAACATGGAG
CTCCGTCGGAAGCGGGTCGAGCCTCTTCCTTACAAGAGAAGAAACCCATC
CACGTTCCGGTAAATGGCTCATTGCGAGCGGGCCTCCAAGCCCCTGCTCC
AATGCCTGCAGAAGACCTACACAAAGGGTCTTCCAGGCCTCCAGCTACAG
TCCACCCGCGCCTTTCAGTCCACCGCTCTGGCTCGCGAGGAAGCCCAGAC
TGAGGCCAAGAGCGCTCCCTTCCACAAGGCGCCTGATCCGGCCCTAGTAA
CGAGTCCCCGGCTGGAACGGAGGTTGTTACGCCAGGGAATCGCCCCCGTC
GGATCTCGTCGACGTCGAGCTGCCCTCCAGGGCTCATCCAACATTCCCTT
CGAGCAGCTGCCCTTCCAATGTTTCCAGGAGGCACGCAAGGTTTTGATCG
CAGACCGGGAAGAGAAGGTGCGCGATATCCAGTCGATGAGCGAGAAGATT
GCCAGACTTCAGGCCCTTCCTACCGAGGAGGCCGGCGGCTTGCAGGTCAA
GAAATCCAAGCTCCGGGCCATGGAGCTCCATCTGGAGCACCTCAAGATCC
TTGCGGATGTCAACGACCCGCTGGTCAAGAAGAAGTTTGAGGATGGGCAA
GGTGACCTCAGCAAGCCCATCTACCGCTACCTGGCCGATCGGAAATGGAG
GGAATACCGTCGCAAGATCCTCGTCCAAAGAATCACGCAAATGAAGGTGA
TTCCCGACGTCCTTCCTCACTGCGACCCTATCGTGGACACCAAGCTCTAC
TTCAACCGCAGCCAGGTACAGCCTGGAGAATACGTCAACGCCAAGGTCAG
CACGACGGCACCTAAACTTGACGTGCAGCTCTTCGAGGGCGGCGAGAAGC
TCGTCACCATCGCCGTGGTCGACTCCGATGTTCCCAACGTTGAGAAGGAT
GGATTCGATTTCAAGATGCACTACCTGGCTGTCAACGTCCCCATCTCGGC
CACGAACACCAAGGTCGACCTGGCCCAGCTGTCGGCTGAGTCGCAGGTTG
TCCTGCCCTGGGAGCCCCCTGTAGCTCAGAAGGGAAGCCCCTACCACCGA
CTGTCTCTGTTCATTCTCGAACAGAAGGACTCCAAGCCATTGGACTTTGC
TGCCGTCAAGGCGAAGGAGACGAACCGCGAGAACCTGCTGCCCCGCACCC
TGCAGGCCCGGTACCACCTGAAGGCGATTGGCGCGCACCTGTTCCGCACG
CAATGGGACGAGACGACGTATGAGGTGATGAAGCAGATTGGCTTCCCCGA
GGCGAACATGGAGCTCCGTCGGAAGCGGGTCGAGCCTCTTCCTTACAAGA
GAAGAAACCCATCCACGTTCCGGTAA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001312KJC3_001312Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001312-T1.utr5p1KJC3_001312-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001312-T1.exon1KJC3_001312-T1.exon1Aspergillus niger KJC3exon
KJC3_001312-T1.exon2KJC3_001312-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001312-T1.cdsKJC3_001312-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001312-T1.utr3p1KJC3_001312-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001312-T1KJC3_001312-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262U7S
DBxrefInterPro:IPR035810
DBxrefInterPro:IPR008914
DBxrefInterPro:IPR036610
DBxrefPFAM:PF01161
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3379820..3382170 +
Powered by Drupal