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KJC3_001316-T1, KJC3_001316-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001316-T1
Unique NameKJC3_001316-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3385314..3386930-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001316-T1 ID=KJC3_001316-T1|Name=KJC3_001316-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1617bp|location=Sequence derived from alignment at ch1:3385314..3386930- (Aspergillus niger KJC3)
GGAGGCGAAATCATCGCAGTTGATATTGCTAACCCGATTAAAACAAAATG
GCGAAGGTCATTTTTACACCATGGAAGGAGCACTCGCAATTACTCGCAGT
GCGGAGTCAATTCTACCCTGCACCGTTTTATGATGGGCCCGACATGCGCT
CCAAGGCCTGCGCCACTGTATGCGAAAAGACACCCTGAAATAATATAGTT
ATCTTTACTTGACCCTAACATGAATTACAGGTCGCGGCTTGGAAGTTACG
AGGAAATCTGCCACATCCAGTCGAGGCCACGGCCTTGCTAACGGATGCTA
TCCTTCATGATGATGCCCTGAAAAATTCCATCTTTTCTATTCGGGCTACG
TACTCGGCTGCGTTTTGTCGGTATGACTGTCTGCTTTGATTCATCGATTA
CATGATTACGCAACAAGTGTAACGATCACTAACGCCAGTTAGATTCGTGA
CGGGGCTCGTCGACTCCAAGCTGAACGGGCAGCGTAAAACCATGTTCCAA
CGAGCCATTGATCTGGGCCTACCGGCCTCATTTGTGGAACTGCGTCACGA
GGCGACGCATCGTGAACTGCCTTCTCTAACAGTGCTGCGCAATGCCACGC
AGCGGTCCCTTGAGTGGCTGTGGGACTACTACTGGGCCAAGACTGATCTG
AGTGCTGATATGATGCCCGTGTCAGAGCCTGAGGCATTTGACGGTGCTGA
AGATGACGTCGAGCCCATCAAGGCGGCTTTAAGAACTGAATTCGAGCACT
TACTGGCTGAAGAAGATTCGTCAGAACCGCCGCGGAAGAAGAGGAGGTTC
CAGCAGAACGTCTCGTCTACGTCTACGCATTTGGTCTCGATATGCAAGTC
TTCCAGTCGTGGGGCGTCTGCGCTAGCAGGCGTGATCGTGGAGGACTCGG
TGTTGGTTCCTGCTGGACGGAAGTGAGTTTTCTTGATATTCTGATCGTGT
ATGAACATCTATAAGCTGACTTGGTACAGAATGGGTGATTCCATGACGGG
CATGTTCGCTAAGTGGGATTCATTATTGCAGATGCTCGCGGAGGGCCATC
CCCCGGTCCTGGCATCGCTGATGGAGGAGATGGTGAATGTACTCGCCTTT
TCAGGCTCAAAGAACGTGAAAAGCGACCCTCAGTTCGAAGGATTATACAT
GTGGCTGGACCATATACTTCAATCGCCGGAATGGGGGTCTCGAAGACGAC
TACTGTCCCACGCATATCTTCTTGCCGTTTGCGAGCAGAGTTCCAACCAC
TGGACGACGCTTCTTAAGGAAAGCTTACAGCAGAGGACGGACGATTTAGC
ACCTAGCAAGCAGTCGTCCACGTCAAAGAAGCAGTCGAAGAAGGACGGAT
CTGGTCTCAAGCGGACTGCAGATGCCGACGATTTGAAAGAGTTGAAGAAA
TTCGGATGGGAGACGGTAGATACGTGGGATACGCGACCGTTAGGGATAGT
ATAGACAGCGGATACGATTTCAACCAAAACCATGCTGTGCAACGGCTCGA
ATGCCCAGCGTAAAGCAACTCCTGTTCACTCCCAACAAAACCCCAGTAGC
ATCTAACAATCTCTTGAAGGACAAGGGGAAAATGTCACGACCGAAAGCAG
CCTAGCGTCTACGCCAC
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Coding sequence (CDS) from alignment at ch1:3385314..3386930-

>KJC3_001316-T1 ID=KJC3_001316-T1|Name=KJC3_001316-T1|organism=Aspergillus niger KJC3|type=CDS|length=4860bp|location=Sequence derived from alignment at ch1:3385314..3386930- (Aspergillus niger KJC3)
AATGGGTGATTCCATGACGGGCATGTTCGCTAAGTGGGATTCATTATTGC
AGATGCTCGCGGAGGGCCATCCCCCGGTCCTGGCATCGCTGATGGAGGAG
ATGGTGAATGTACTCGCCTTTTCAGGCTCAAAGAACGTGAAAAGCGACCC
TCAGTTCGAAGGATTATACATGTGGCTGGACCATATACTTCAATCGCCGG
AATGGGGGTCTCGAAGACGACTACTGTCCCACGCATATCTTCTTGCCGTT
TGCGAGCAGAGTTCCAACCACTGGACGACGCTTCTTAAGGAAAGCTTACA
GCAGAGGACGGACGATTTAGCACCTAGCAAGCAGTCGTCCACGTCAAAGA
AGCAGTCGAAGAAGGACGGATCTGGTCTCAAGCGGACTGCAGATGCCGAC
GATTTGAAAGAGTTGAAGAAATTCGGATGGGAGACGGTAGATACGTGGGA
TACGCGACCGTTAGGGATAGTATAGATTCGTGACGGGGCTCGTCGACTCC
AAGCTGAACGGGCAGCGTAAAACCATGTTCCAACGAGCCATTGATCTGGG
CCTACCGGCCTCATTTGTGGAACTGCGTCACGAGGCGACGCATCGTGAAC
TGCCTTCTCTAACAGTGCTGCGCAATGCCACGCAGCGGTCCCTTGAGTGG
CTGTGGGACTACTACTGGGCCAAGACTGATCTGAGTGCTGATATGATGCC
CGTGTCAGAGCCTGAGGCATTTGACGGTGCTGAAGATGACGTCGAGCCCA
TCAAGGCGGCTTTAAGAACTGAATTCGAGCACTTACTGGCTGAAGAAGAT
TCGTCAGAACCGCCGCGGAAGAAGAGGAGGTTCCAGCAGAACGTCTCGTC
TACGTCTACGCATTTGGTCTCGATATGCAAGTCTTCCAGTCGTGGGGCGT
CTGCGCTAGCAGGCGTGATCGTGGAGGACTCGGTGTTGGTTCCTGCTGGA
CGGAAGTCGCGGCTTGGAAGTTACGAGGAAATCTGCCACATCCAGTCGAG
GCCACGGCCTTGCTAACGGATGCTATCCTTCATGATGATGCCCTGAAAAA
TTCCATCTTTTCTATTCGGGCTACGTACTCGGCTGCGTTTTGTCGATGGC
GAAGGTCATTTTTACACCATGGAAGGAGCACTCGCAATTACTCGCAGTGC
GGAGTCAATTCTACCCTGCACCGTTTTATGATGGGCCCGACATGCGCTCC
AAGGCCTGCGCCACTAATGGGTGATTCCATGACGGGCATGTTCGCTAAGT
GGGATTCATTATTGCAGATGCTCGCGGAGGGCCATCCCCCGGTCCTGGCA
TCGCTGATGGAGGAGATGGTGAATGTACTCGCCTTTTCAGGCTCAAAGAA
CGTGAAAAGCGACCCTCAGTTCGAAGGATTATACATGTGGCTGGACCATA
TACTTCAATCGCCGGAATGGGGGTCTCGAAGACGACTACTGTCCCACGCA
TATCTTCTTGCCGTTTGCGAGCAGAGTTCCAACCACTGGACGACGCTTCT
TAAGGAAAGCTTACAGCAGAGGACGGACGATTTAGCACCTAGCAAGCAGT
CGTCCACGTCAAAGAAGCAGTCGAAGAAGGACGGATCTGGTCTCAAGCGG
ACTGCAGATGCCGACGATTTGAAAGAGTTGAAGAAATTCGGATGGGAGAC
GGTAGATACGTGGGATACGCGACCGTTAGGGATAGTATAGATTCGTGACG
GGGCTCGTCGACTCCAAGCTGAACGGGCAGCGTAAAACCATGTTCCAACG
AGCCATTGATCTGGGCCTACCGGCCTCATTTGTGGAACTGCGTCACGAGG
CGACGCATCGTGAACTGCCTTCTCTAACAGTGCTGCGCAATGCCACGCAG
CGGTCCCTTGAGTGGCTGTGGGACTACTACTGGGCCAAGACTGATCTGAG
TGCTGATATGATGCCCGTGTCAGAGCCTGAGGCATTTGACGGTGCTGAAG
ATGACGTCGAGCCCATCAAGGCGGCTTTAAGAACTGAATTCGAGCACTTA
CTGGCTGAAGAAGATTCGTCAGAACCGCCGCGGAAGAAGAGGAGGTTCCA
GCAGAACGTCTCGTCTACGTCTACGCATTTGGTCTCGATATGCAAGTCTT
CCAGTCGTGGGGCGTCTGCGCTAGCAGGCGTGATCGTGGAGGACTCGGTG
TTGGTTCCTGCTGGACGGAAGTCGCGGCTTGGAAGTTACGAGGAAATCTG
CCACATCCAGTCGAGGCCACGGCCTTGCTAACGGATGCTATCCTTCATGA
TGATGCCCTGAAAAATTCCATCTTTTCTATTCGGGCTACGTACTCGGCTG
CGTTTTGTCGATGGCGAAGGTCATTTTTACACCATGGAAGGAGCACTCGC
AATTACTCGCAGTGCGGAGTCAATTCTACCCTGCACCGTTTTATGATGGG
CCCGACATGCGCTCCAAGGCCTGCGCCACTAATGGGTGATTCCATGACGG
GCATGTTCGCTAAGTGGGATTCATTATTGCAGATGCTCGCGGAGGGCCAT
CCCCCGGTCCTGGCATCGCTGATGGAGGAGATGGTGAATGTACTCGCCTT
TTCAGGCTCAAAGAACGTGAAAAGCGACCCTCAGTTCGAAGGATTATACA
TGTGGCTGGACCATATACTTCAATCGCCGGAATGGGGGTCTCGAAGACGA
CTACTGTCCCACGCATATCTTCTTGCCGTTTGCGAGCAGAGTTCCAACCA
CTGGACGACGCTTCTTAAGGAAAGCTTACAGCAGAGGACGGACGATTTAG
CACCTAGCAAGCAGTCGTCCACGTCAAAGAAGCAGTCGAAGAAGGACGGA
TCTGGTCTCAAGCGGACTGCAGATGCCGACGATTTGAAAGAGTTGAAGAA
ATTCGGATGGGAGACGGTAGATACGTGGGATACGCGACCGTTAGGGATAG
TATAGATTCGTGACGGGGCTCGTCGACTCCAAGCTGAACGGGCAGCGTAA
AACCATGTTCCAACGAGCCATTGATCTGGGCCTACCGGCCTCATTTGTGG
AACTGCGTCACGAGGCGACGCATCGTGAACTGCCTTCTCTAACAGTGCTG
CGCAATGCCACGCAGCGGTCCCTTGAGTGGCTGTGGGACTACTACTGGGC
CAAGACTGATCTGAGTGCTGATATGATGCCCGTGTCAGAGCCTGAGGCAT
TTGACGGTGCTGAAGATGACGTCGAGCCCATCAAGGCGGCTTTAAGAACT
GAATTCGAGCACTTACTGGCTGAAGAAGATTCGTCAGAACCGCCGCGGAA
GAAGAGGAGGTTCCAGCAGAACGTCTCGTCTACGTCTACGCATTTGGTCT
CGATATGCAAGTCTTCCAGTCGTGGGGCGTCTGCGCTAGCAGGCGTGATC
GTGGAGGACTCGGTGTTGGTTCCTGCTGGACGGAAGTCGCGGCTTGGAAG
TTACGAGGAAATCTGCCACATCCAGTCGAGGCCACGGCCTTGCTAACGGA
TGCTATCCTTCATGATGATGCCCTGAAAAATTCCATCTTTTCTATTCGGG
CTACGTACTCGGCTGCGTTTTGTCGATGGCGAAGGTCATTTTTACACCAT
GGAAGGAGCACTCGCAATTACTCGCAGTGCGGAGTCAATTCTACCCTGCA
CCGTTTTATGATGGGCCCGACATGCGCTCCAAGGCCTGCGCCACTAATGG
GTGATTCCATGACGGGCATGTTCGCTAAGTGGGATTCATTATTGCAGATG
CTCGCGGAGGGCCATCCCCCGGTCCTGGCATCGCTGATGGAGGAGATGGT
GAATGTACTCGCCTTTTCAGGCTCAAAGAACGTGAAAAGCGACCCTCAGT
TCGAAGGATTATACATGTGGCTGGACCATATACTTCAATCGCCGGAATGG
GGGTCTCGAAGACGACTACTGTCCCACGCATATCTTCTTGCCGTTTGCGA
GCAGAGTTCCAACCACTGGACGACGCTTCTTAAGGAAAGCTTACAGCAGA
GGACGGACGATTTAGCACCTAGCAAGCAGTCGTCCACGTCAAAGAAGCAG
TCGAAGAAGGACGGATCTGGTCTCAAGCGGACTGCAGATGCCGACGATTT
GAAAGAGTTGAAGAAATTCGGATGGGAGACGGTAGATACGTGGGATACGC
GACCGTTAGGGATAGTATAGATTCGTGACGGGGCTCGTCGACTCCAAGCT
GAACGGGCAGCGTAAAACCATGTTCCAACGAGCCATTGATCTGGGCCTAC
CGGCCTCATTTGTGGAACTGCGTCACGAGGCGACGCATCGTGAACTGCCT
TCTCTAACAGTGCTGCGCAATGCCACGCAGCGGTCCCTTGAGTGGCTGTG
GGACTACTACTGGGCCAAGACTGATCTGAGTGCTGATATGATGCCCGTGT
CAGAGCCTGAGGCATTTGACGGTGCTGAAGATGACGTCGAGCCCATCAAG
GCGGCTTTAAGAACTGAATTCGAGCACTTACTGGCTGAAGAAGATTCGTC
AGAACCGCCGCGGAAGAAGAGGAGGTTCCAGCAGAACGTCTCGTCTACGT
CTACGCATTTGGTCTCGATATGCAAGTCTTCCAGTCGTGGGGCGTCTGCG
CTAGCAGGCGTGATCGTGGAGGACTCGGTGTTGGTTCCTGCTGGACGGAA
GTCGCGGCTTGGAAGTTACGAGGAAATCTGCCACATCCAGTCGAGGCCAC
GGCCTTGCTAACGGATGCTATCCTTCATGATGATGCCCTGAAAAATTCCA
TCTTTTCTATTCGGGCTACGTACTCGGCTGCGTTTTGTCGATGGCGAAGG
TCATTTTTACACCATGGAAGGAGCACTCGCAATTACTCGCAGTGCGGAGT
CAATTCTACCCTGCACCGTTTTATGATGGGCCCGACATGCGCTCCAAGGC
CTGCGCCACT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0090730Las1 complex
Vocabulary: Molecular Function
TermDefinition
GO:0004519endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001316KJC3_001316Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001316-T1KJC3_001316-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001316-T1.cdsKJC3_001316-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001316-T1.utr3p2KJC3_001316-T1.utr3p2Aspergillus niger KJC3three_prime_UTR
KJC3_001316-T1.utr3p1KJC3_001316-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001316-T1.exon5KJC3_001316-T1.exon5Aspergillus niger KJC3exon
KJC3_001316-T1.exon4KJC3_001316-T1.exon4Aspergillus niger KJC3exon
KJC3_001316-T1.exon3KJC3_001316-T1.exon3Aspergillus niger KJC3exon
KJC3_001316-T1.exon2KJC3_001316-T1.exon2Aspergillus niger KJC3exon
KJC3_001316-T1.exon1KJC3_001316-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001316-T1.utr5p1KJC3_001316-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR007174
DBxrefPFAM:PF04031
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3385314..3386930 -
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