You are here

Home

KJC3_001321-T1, KJC3_001321-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001321-T1
Unique NameKJC3_001321-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3407054..3407914+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001321-T1 ID=KJC3_001321-T1|Name=KJC3_001321-T1|organism=Aspergillus niger KJC3|type=mRNA|length=861bp|location=Sequence derived from alignment at ch1:3407054..3407914+ (Aspergillus niger KJC3)
ATCTAGCAATTACCATAAACTATATCAATATCAATCCCACCATTACTTAC
CCCTCCTGATCACTATACCCTCCTTGCCAAACGAGAAACAGCATACAAAC
CACCCCCACCACCACAACAATAAACAGAAGGAGAATAAAGAAATAAAAAA
TGTCCCTCCAAACCCCCCGCATCCTCCCCTCCCACCTCCACGCCTTCCAC
CCCTCCTCCGCCGGCCCACGCACATCCCATACCGTCCGTATCCTAGGAAC
AGTGACTGCTCTGCGCGGCGACACGGCGACTATGACGTGCGGAAACCACG
GCGATGTGACGCTCATCTTGAAGCCCGATTCGCATTTGCAGATGGGCAAG
TTGGTGGAGATTATTGGGAAGGTGGCGGATCTGGATAATGGGAGTGTATG
TTTCAATACCTTATTTTTTCCCCCGCTATAAATGAGGGGTTGTTCTTGGG
TAGGATAATGGCTAATTTTGGTTATGTGGCGTTTAGGGCGTGGGTATTAG
AGTCCTGGGAAGTACGGATTGGGGGAGTCCCGCGGATTGCGGTAGGTTTT
CTTCTTTTCTTATGGACTATGGAGAAGGGGTAAAAGGAAAAAGGTGCTAA
TTGTGGTTGTTGATGTGGCTGCAGATTACACGATCTATGAACAGGTTGTC
AATGCTACGCATAAGCTCAAGCCTATCTTTTATGATGAGTGAGTGGGCTG
TTAGGGAGGATGTGGTACAAAATGAATGGGTTAGTGGATGGTCTTAGGAG
CACTTGTTGAGCTGCCGTGAGATACCTTGCTGTTATGGGTGACTACGAGT
ATCCACCTTATGTGTGCTGCAGTTGAGGTGTCATTTGCGTCGTATTCGGG
TTATTCTTTGG
back to top

Coding sequence (CDS) from alignment at ch1:3407054..3407914+

>KJC3_001321-T1 ID=KJC3_001321-T1|Name=KJC3_001321-T1|organism=Aspergillus niger KJC3|type=CDS|length=1107bp|location=Sequence derived from alignment at ch1:3407054..3407914+ (Aspergillus niger KJC3)
ATGTCCCTCCAAACCCCCCGCATCCTCCCCTCCCACCTCCACGCCTTCCA
CCCCTCCTCCGCCGGCCCACGCACATCCCATACCGTCCGTATCCTAGGAA
CAGTGACTGCTCTGCGCGGCGACACGGCGACTATGACGTGCGGAAACCAC
GGCGATGTGACGCTCATCTTGAAGCCCGATTCGCATTTGCAGATGGGCAA
GTTGGTGGAGATTATTGGGAAGGTGGCGGATCTGGATAATGGGAGTGGCG
TGGGTATTAGAGTCCTGGGAAGTACGGATTGGGGGAGTCCCGCGGATTGC
GATTACACGATCTATGAACAGGTTGTCAATGCTACGCATAAGCTCAAGCC
TATCTTTTATGATGAGTGAATGTCCCTCCAAACCCCCCGCATCCTCCCCT
CCCACCTCCACGCCTTCCACCCCTCCTCCGCCGGCCCACGCACATCCCAT
ACCGTCCGTATCCTAGGAACAGTGACTGCTCTGCGCGGCGACACGGCGAC
TATGACGTGCGGAAACCACGGCGATGTGACGCTCATCTTGAAGCCCGATT
CGCATTTGCAGATGGGCAAGTTGGTGGAGATTATTGGGAAGGTGGCGGAT
CTGGATAATGGGAGTGGCGTGGGTATTAGAGTCCTGGGAAGTACGGATTG
GGGGAGTCCCGCGGATTGCGATTACACGATCTATGAACAGGTTGTCAATG
CTACGCATAAGCTCAAGCCTATCTTTTATGATGAGTGAATGTCCCTCCAA
ACCCCCCGCATCCTCCCCTCCCACCTCCACGCCTTCCACCCCTCCTCCGC
CGGCCCACGCACATCCCATACCGTCCGTATCCTAGGAACAGTGACTGCTC
TGCGCGGCGACACGGCGACTATGACGTGCGGAAACCACGGCGATGTGACG
CTCATCTTGAAGCCCGATTCGCATTTGCAGATGGGCAAGTTGGTGGAGAT
TATTGGGAAGGTGGCGGATCTGGATAATGGGAGTGGCGTGGGTATTAGAG
TCCTGGGAAGTACGGATTGGGGGAGTCCCGCGGATTGCGATTACACGATC
TATGAACAGGTTGTCAATGCTACGCATAAGCTCAAGCCTATCTTTTATGA
TGAGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006260DNA replication
GO:0006310DNA recombination
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001321KJC3_001321Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001321-T1KJC3_001321-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001321-T1.utr5p1KJC3_001321-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001321-T1.exon1KJC3_001321-T1.exon1Aspergillus niger KJC3exon
KJC3_001321-T1.exon2KJC3_001321-T1.exon2Aspergillus niger KJC3exon
KJC3_001321-T1.exon3KJC3_001321-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001321-T1.cdsKJC3_001321-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001321-T1.utr3p1KJC3_001321-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR013970
DBxrefPFAM:PF08661
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3407054..3407914 +
Powered by Drupal