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KJC3_001323-T1, KJC3_001323-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001323-T1
Unique NameKJC3_001323-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3412779..3414149+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001323-T1 ID=KJC3_001323-T1|Name=KJC3_001323-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1371bp|location=Sequence derived from alignment at ch1:3412779..3414149+ (Aspergillus niger KJC3)
CAAGTTCAAGCCTGTCCCTGCTGTCCTCCTCTGCACCGGCACCTTCCACC
CCATATTTATACTCGCGCCCACCATGTCGACCGATCCCAAGATCCAGTAA
TTACCCCTCTTTTCCTACCCTCCTTTACATCCCGATGAGTCATTAGCTCT
TGTCATGGTGTAATCCGCTCCTCAACCTGCCGGACCTCATTGCTAACCTT
GTCTTGCAATTCATTAGGGACCTGCTCAACAAGCCTAAGAGCGAGCTCAC
GTACGTTATCGAACCCCTCCTCTTCTTTCCGGCTTTTATCAAAGCTTTCT
ATTCCCGTGTTCCTATCACATGATGCCCGATCCCCTTTGCACACCTATCA
GTCCAACTACCCATGCCCACCACAACCCATGATATCCGGATAGTGTCCCG
CGCGCCTAATTCTCATCGCGCCACATCATATCTATCTATCTACCAACCCA
TCATCGCCGTCCATTCGCTAACCTGGCGCCTCATTCAGTGAATACGAGGT
CTCCCTCGTCGAGGAACATGAGCTCACTGCCGGTCCTTTGTCCCTTCTCC
AAACCGCTACGCGCACACACACCCAGGTCCTGATCTCATGCCGGAACAAC
CGCAAGCTCCTCGCCCGTGTCAAGGCCTTCGACCGCCACTGCAACATGGT
TCTGGAGAACGTCAAGGAGATGTGGACCGAGAAGCCCAAGGGTGGTAACG
GCAAGGGTGTTAACAAGGATCGCTTCATCAGCAAGATGTAAGCATCGCCA
TTACCTACACTCACCCTCTCCCCCCGCCAGAAACAATCCTAACCCAACCT
TTTATCGTAGGTTCCTCCGTGGTGACTCCGTCATCCTCGTCCTGCTCAGC
TGAACTCTGTTCACATGATGCGCTCATTTCCCTTCTCGAACGGTCCTGGG
CCGGTCCGGGCTTGGCTTCTCTCTGATCGAGCTGAAATCCGACGGAGACG
ATTTCTAGTTGACACAGACGAATGAACGATACCCTTTTAGTCGTGCGATA
CTTGCGGGATTGGACGGGATGTTAGATTACATCATCACGTACAATCTGCC
TCCCCGCCCAATTAATCCAGCCCTATCCGGACCTTGGCTCTCCTTTTCCT
TCTCGTTTCATATATTGCTATTTTCCGATCTCAAATTCACCGTTCTCTCT
GATTTACGGCGGGGGCAGATTTGGCGTTCTCCGGACTCTTTTGTTTTTTT
AAAGCTAGAAAAAGGAATCTGAAGTGGAGTATCTCGGCTTGATAAAAGTA
GGGGGAGGACATTGATGAATCGGGTTGTACTCGATGCTCGAGCGAGAGCT
AGATAGTGCTAGCCAGGATTGTGAAGTGTATCTGACTTGGTTGGATATAC
TCTGAATGTTAATACTACGAT
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Coding sequence (CDS) from alignment at ch1:3412779..3414149+

>KJC3_001323-T1 ID=KJC3_001323-T1|Name=KJC3_001323-T1|organism=Aspergillus niger KJC3|type=CDS|length=1392bp|location=Sequence derived from alignment at ch1:3412779..3414149+ (Aspergillus niger KJC3)
ATGTCGACCGATCCCAAGATCCAGGACCTGCTCAACAAGCCTAAGAGCGA
GCTCACTGAATACGAGGTCTCCCTCGTCGAGGAACATGAGCTCACTGCCG
GTCCTTTGTCCCTTCTCCAAACCGCTACGCGCACACACACCCAGGTCCTG
ATCTCATGCCGGAACAACCGCAAGCTCCTCGCCCGTGTCAAGGCCTTCGA
CCGCCACTGCAACATGGTTCTGGAGAACGTCAAGGAGATGTGGACCGAGA
AGCCCAAGGGTGGTAACGGCAAGGGTGTTAACAAGGATCGCTTCATCAGC
AAGATGTTCCTCCGTGGTGACTCCGTCATCCTCGTCCTGCTCAGCTGAAT
GTCGACCGATCCCAAGATCCAGGACCTGCTCAACAAGCCTAAGAGCGAGC
TCACTGAATACGAGGTCTCCCTCGTCGAGGAACATGAGCTCACTGCCGGT
CCTTTGTCCCTTCTCCAAACCGCTACGCGCACACACACCCAGGTCCTGAT
CTCATGCCGGAACAACCGCAAGCTCCTCGCCCGTGTCAAGGCCTTCGACC
GCCACTGCAACATGGTTCTGGAGAACGTCAAGGAGATGTGGACCGAGAAG
CCCAAGGGTGGTAACGGCAAGGGTGTTAACAAGGATCGCTTCATCAGCAA
GATGTTCCTCCGTGGTGACTCCGTCATCCTCGTCCTGCTCAGCTGAATGT
CGACCGATCCCAAGATCCAGGACCTGCTCAACAAGCCTAAGAGCGAGCTC
ACTGAATACGAGGTCTCCCTCGTCGAGGAACATGAGCTCACTGCCGGTCC
TTTGTCCCTTCTCCAAACCGCTACGCGCACACACACCCAGGTCCTGATCT
CATGCCGGAACAACCGCAAGCTCCTCGCCCGTGTCAAGGCCTTCGACCGC
CACTGCAACATGGTTCTGGAGAACGTCAAGGAGATGTGGACCGAGAAGCC
CAAGGGTGGTAACGGCAAGGGTGTTAACAAGGATCGCTTCATCAGCAAGA
TGTTCCTCCGTGGTGACTCCGTCATCCTCGTCCTGCTCAGCTGAATGTCG
ACCGATCCCAAGATCCAGGACCTGCTCAACAAGCCTAAGAGCGAGCTCAC
TGAATACGAGGTCTCCCTCGTCGAGGAACATGAGCTCACTGCCGGTCCTT
TGTCCCTTCTCCAAACCGCTACGCGCACACACACCCAGGTCCTGATCTCA
TGCCGGAACAACCGCAAGCTCCTCGCCCGTGTCAAGGCCTTCGACCGCCA
CTGCAACATGGTTCTGGAGAACGTCAAGGAGATGTGGACCGAGAAGCCCA
AGGGTGGTAACGGCAAGGGTGTTAACAAGGATCGCTTCATCAGCAAGATG
TTCCTCCGTGGTGACTCCGTCATCCTCGTCCTGCTCAGCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030532small nuclear ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0008380RNA splicing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SMD2KJC3_001323Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001323-T1KJC3_001323-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001323-T1.utr5p1KJC3_001323-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001323-T1.exon1KJC3_001323-T1.exon1Aspergillus niger KJC3exon
KJC3_001323-T1.exon2KJC3_001323-T1.exon2Aspergillus niger KJC3exon
KJC3_001323-T1.exon3KJC3_001323-T1.exon3Aspergillus niger KJC3exon
KJC3_001323-T1.exon4KJC3_001323-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001323-T1.cdsKJC3_001323-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001323-T1.utr3p1KJC3_001323-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09265IT6
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR027248
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductmRNA splicing protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3412779..3414149 +
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