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KJC3_001349-T1, KJC3_001349-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001349-T1
Unique NameKJC3_001349-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3497090..3498643-

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001349-T1 ID=KJC3_001349-T1|Name=KJC3_001349-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1554bp|location=Sequence derived from alignment at ch1:3497090..3498643- (Aspergillus niger KJC3)
TTCGGCTAGCTCGTAAGACAGATTATGTCATGCTCTATATTCTGCCATTC
CCCACCGCTCTGCCGACGATGTCATTCATGGGCCTTTGATTTGTAAACGC
TATGCAGATTTGATTTCAGTTTCATCCCACAAACATGATGCGCTCCAGCC
CATCTACACGCACAATATGTGCGCAATGCCTCAGTCGCAATCGACACTTC
TCCACGACCATCCAGCGTTGCGCCCCACGATCCAGCACCCCGAACCCTCC
CTCCCCGCCAGCAACCGGATATGCACGTCTCACGAACCGCGGATTAATCT
CCATAACGGGCATAGATAGCACCTCATATCTCCAAGGCTTAATCACGCAG
AACATGCTCATTACGAACGACCCGAACCGCCCGACCCGTCGAACGGGCTC
CTACACTGCCTTCCTGAACTCCCAAGGCCGCGTGCTCAACGACGCCTTCC
TCTACCCACTGCCCCAGGCAGAGGGCACTTCGCCGGACGAACATGCATGG
CTTGTAGAGGTGGACAAGAGCGAAGTCACGGGTCTCCTGAAGCATCTCAA
AAAACACAAACTCCGCGCGAAACTGAAGCTACGTGCCCTGGATGAGGGAG
AACGCACTGTGTGGGCCTCATGGAAGGACCATAGTGAACCGCGGTGGGCA
GCGTACAATCTGGATTCCCAGTCTTTTTCACCCTTTGCCTCGTCCTCCGC
GACGGTCACCGGGTGTGTGGATACCCGCGCACCAGGGTTCGGATCCAGGC
TCATCACGCCGGGGGAGGGAGACTTGACGACGCATCTGGCGGGGGCAGAA
GGAGAGGGGTATGGATCGGAGGTGGACCTGGGCTCTTACACCGTGCGACG
GATGTTACATGGCGTTGCGGAAGGGCAGGCGGAGATCATTCGCGAGTCCG
CACTTCCGTTGGAGTCGAACATGGATATGATGCGGGGCATCGATTTCCGC
AAGGGATGCTATGTCGGTCAGGAACTTACGATCCGGACCCATCATACTGG
TGTTGTGAGAAAGCGTATACTTCCGGTTCAGTTGTATGAAGGGAGTCTAG
GGGATTTGGAATCGGCCGATATGCCCGTGTACGACCCCTCTGTGGAGGTG
GAATTGCCGCCATCCGGGTCGAATATTTCCAAGGTCAGCGCCCGCAAGGG
CCGTAGTGCGGGCAAGTTCTTAGGTGGTGTTGGAAACATCGGACTTGCTT
TGTGTCGGTTGGAAATGATGACGGATGTTGCTTTGACTGGGGAGGGAACT
CAATATAGTCCTGATCAGGAGTTCAAGGTCTCATGGACTGGAGCCGAAGA
TGGATCATCTGAGTCTGGCGAGGTGAAGTTGAAAGCACTTGTCCCGGCTT
GGACGAGAGAGTACATCTCCAATGGTGGAGTGAAGAAAACTCAGGGCCGT
AACCTAGAACTGGAGGGACAGCGGGCCAGGGAACTGTTGGAACAGTTGGA
GGAAGAGGAGTCGTCACGATGAGATGATTTAACTGCGCCAGCAATGTATC
ATAGAGCAAATATGTAAGATATTGTCATAAAAATATACCGGTAAATACCA
TGTC
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Coding sequence (CDS) from alignment at ch1:3497090..3498643-

>KJC3_001349-T1 ID=KJC3_001349-T1|Name=KJC3_001349-T1|organism=Aspergillus niger KJC3|type=CDS|length=1338bp|location=Sequence derived from alignment at ch1:3497090..3498643- (Aspergillus niger KJC3)
ATGATGCGCTCCAGCCCATCTACACGCACAATATGTGCGCAATGCCTCAG
TCGCAATCGACACTTCTCCACGACCATCCAGCGTTGCGCCCCACGATCCA
GCACCCCGAACCCTCCCTCCCCGCCAGCAACCGGATATGCACGTCTCACG
AACCGCGGATTAATCTCCATAACGGGCATAGATAGCACCTCATATCTCCA
AGGCTTAATCACGCAGAACATGCTCATTACGAACGACCCGAACCGCCCGA
CCCGTCGAACGGGCTCCTACACTGCCTTCCTGAACTCCCAAGGCCGCGTG
CTCAACGACGCCTTCCTCTACCCACTGCCCCAGGCAGAGGGCACTTCGCC
GGACGAACATGCATGGCTTGTAGAGGTGGACAAGAGCGAAGTCACGGGTC
TCCTGAAGCATCTCAAAAAACACAAACTCCGCGCGAAACTGAAGCTACGT
GCCCTGGATGAGGGAGAACGCACTGTGTGGGCCTCATGGAAGGACCATAG
TGAACCGCGGTGGGCAGCGTACAATCTGGATTCCCAGTCTTTTTCACCCT
TTGCCTCGTCCTCCGCGACGGTCACCGGGTGTGTGGATACCCGCGCACCA
GGGTTCGGATCCAGGCTCATCACGCCGGGGGAGGGAGACTTGACGACGCA
TCTGGCGGGGGCAGAAGGAGAGGGGTATGGATCGGAGGTGGACCTGGGCT
CTTACACCGTGCGACGGATGTTACATGGCGTTGCGGAAGGGCAGGCGGAG
ATCATTCGCGAGTCCGCACTTCCGTTGGAGTCGAACATGGATATGATGCG
GGGCATCGATTTCCGCAAGGGATGCTATGTCGGTCAGGAACTTACGATCC
GGACCCATCATACTGGTGTTGTGAGAAAGCGTATACTTCCGGTTCAGTTG
TATGAAGGGAGTCTAGGGGATTTGGAATCGGCCGATATGCCCGTGTACGA
CCCCTCTGTGGAGGTGGAATTGCCGCCATCCGGGTCGAATATTTCCAAGG
TCAGCGCCCGCAAGGGCCGTAGTGCGGGCAAGTTCTTAGGTGGTGTTGGA
AACATCGGACTTGCTTTGTGTCGGTTGGAAATGATGACGGATGTTGCTTT
GACTGGGGAGGGAACTCAATATAGTCCTGATCAGGAGTTCAAGGTCTCAT
GGACTGGAGCCGAAGATGGATCATCTGAGTCTGGCGAGGTGAAGTTGAAA
GCACTTGTCCCGGCTTGGACGAGAGAGTACATCTCCAATGGTGGAGTGAA
GAAAACTCAGGGCCGTAACCTAGAACTGGAGGGACAGCGGGCCAGGGAAC
TGTTGGAACAGTTGGAGGAAGAGGAGTCGTCACGATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAF17KJC3_001349Aspergillus niger KJC3gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001349-T1.cdsKJC3_001349-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001349-T1.utr3p1KJC3_001349-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001349-T1.exon1KJC3_001349-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001349-T1.utr5p1KJC3_001349-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001349-T1KJC3_001349-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG092620V3
DBxrefInterPro:IPR017703
DBxrefInterPro:IPR027266
Productccr4 associated factor
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3497090..3498643 -
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