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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3498672..3501752- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001350-T1 ID=KJC3_001350-T1|Name=KJC3_001350-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3081bp|location=Sequence derived from alignment at ch1:3498672..3501752- (Aspergillus niger KJC3)
GCTCACTCTTAGCCGTCCTCCATTATTGTTAGGCCGTCGGGTGTCGACCA
GAAGAGCCACAGTTCCCTCACTCTCTACCCACCTATCAGCGCTTCTTCTC
TTGCTTGGAGGTAGATAAGCCAATTGGTTTGCCCTCGAATCCCTGCCTTC
TTAGCCTTCTTGCAAAAGTACGCTTCAGGGTTGGCGCTTGCCAAGCACCC
TTCCTTGAAGCTGCAGCAGCGCGCTGTGCTGTCCCCTCAGTCCTCGTTCG
CTCCGCCTCGCGCTCTCTCCGCTTGACGTTCGGAGAGCTCCTTGCCTGTC
CTTACCTCTGCTGAAATGCTAGAGCACGTTGTCCAGTATGACAGAAACAA
AGATGCAGTTGGAAGACTGTGAGTCTCGCCTTGACGCTTGTCTTCCCCCC
CGCCCGCGTGGCTAAGGTGACCTCGGCTGTGCTAACTTGGATGGCTCCGG
GCAGGGCTGGATGATTTGTGTGTTCGCTTCATCATTAACTTACCCCGAGA
AGAGCTCGAATCTGTTGAACGCATCTGTTTTCAGGTTGAAGAAGCACAAT
GGTTCTACGAAGACTTCATTCGGCCGTTGGATCCGGCTCTTCCGTCCTTG
TCCCTGAAAGCCTTCGCTTTGCGCATCTTTCAGCATTGCCCATTGATGTC
CCAATGGTCGCACTATCACCACATCACCGCGTTTTCCGAATTCTTGGCCT
ACAAAACCCGGGTCCCGGTGCGCGGTGCCATCATGCTCAATCATGACATG
GATGAGGTGGTCTTAGTCAAAGGCTGGAAGAAGGGCGCCAACTGGAGTTT
CCCACGAGGCAAAATCAACAAAGATGAGAAAGACATCGACTGTGCCATCC
GGGAAGTGTACGAGGAAACTGGTTTTGACGTTCGACAAGCTGGATTGGTC
CAAGATGAGAAAGATGTCAAGTTCATCGAAATCACCATGAGAGAGCAGCA
CATGAGGCTGTATGTTTTCCGGGGCGTGCCACAGGATGCTCATTTCGAGC
CGCGTACCCGCAAGGAGATCAGCAAGATTGAGTGGTACAAGCTGTCGGAG
TTGCCGACCCTCAAGAAGAGCAAGCAGCAAGATCAAGGCTTCGTCGTCGC
CAATGCGAACAAGTTCTACATGGTAGCTCCGTTTATGCATCCCCTCAAGA
AGTGGATTGCCCAACAAAAGAGGCTTGAAGGAAAGCTGCCAGGTGGCCCG
AAGTTACCTATGCCGAACGACATGTCGATTGACGAAGCTTCCCATGCCGT
GCACAGCTTCACACCAAACCAAGCCGCTGCGGAAATGGCTACGCCCAGTG
ACTTGCCAGAACTTGCGTCGACCCAAGACGCCTCTGCTCACCTTAAGCGC
CTTCTCAATATTAACAATCTGGTTCCCCCTAAGAATCCATCGCCGGTCAC
CCATTCGCCAGTGTCCGGGCCTAGTGCCTCTAAATCTAATGCTCTCTTAG
AGCTGCTGAGGACCGGCTCGTCTCGTGAATCCCTTCCACAAGCCCCTATT
CCAGAGCAGCAATCGACTCCAGCACCTCCCCCAGGAAGTGTGCCTCCTGT
GAGTCGGCCTCATCCCGCGATGGGCTTCTTCCCGGGCTTTCCTCAACAAG
GCCCTCATGTCGGGGTACCTCCCAGCTTGCCGTCATACCCACAACCAAAT
CACGGTCCTGTACCACATCTACCAGCATCCATTGTCAATGCAATGTCTCA
TGGCCCGTTGAATCAAATACCGCTTTCTGCCGCTCCTCCGGGGCCATCGG
GCAATTTTCACGGAACGTTCCCCCCTCAACAGTCGCTTGCATCACACTTC
TACAAGGAGACAGGTTCACTGGCAGAACTCGCTCCCGCTCCGCAGAGTCA
AGCCGCCCCTGCCCCCTACCATCGCACGGGTGATCCTCAATTCTCTCAAT
CAGGTCAGCCTTCCCAAGTTCAGGGTGCGACTGTGCCACCGGCGAGCAAG
TTGCCTCCACCGAAGCTTACGAGCCATTCACTGGCTCTGTTGAATGTTTT
TAAGGATGACTCGACCAAAACACCCAAGACGCCTAAGGCGACCTTGGTGT
CACATACAGGAGCGGCACCAGCCAATGAACGAAGATCATCACAGCATCAG
GATCAGCTCCTTAATCTGCTGAGAGGGTCCCCGGCTCCTGCTGTCTCTGG
GCCGGCCGAACTATCGGGTCAGTCAGTGTCCCCGGCTAGAAAACAAGTCC
TTCAACGGCCCCGGGGTGACCAGAGCCCTGCGCGGCGCAGTTCGCCCGCT
GCTAAACCATGGACTTCTGCACCAGCCTCTGGACCGACCATGCATACTCT
ACAGCCTGGAACTCAAAAGCCATCGAGAAAGGGACAGAATGGGCCGAATC
GCAAAGGACCCAGAACTGAGCAGGCATCAGCTGTCACGGCCCCTATAACA
ATCCTGGCAAGGCCGCAAGCCGCTAAGGAACAGCCTTCCGCCCGCGCTCC
TCCGCAATCCTCCCGTCCTCCCTCCCAGCCTAGGGGGCCGAAACCCAGTT
CTCCAGAGCCACCGAAACCCTTCCAGCCGCAAATTCTACGTCGCTCTGAT
CATCCAAATGCGATCAATCTTCTCCCGATTCGGACTGCACTCAATGAGAA
TCAAGATCAACAGGCCGCCGCGCGCTCCACAGAATCTCCTCGGCATTCGC
AGCCTCAACCGAGCTTCGACCGTCGACCGAGTCAAACTGTTGCGCAAAAG
GAGATGCTCTTGTCACTCTTTGGCAAATCATCTGTCTCCCCAAACATTTC
TCCTGCGGAACTGAGCGCATCTGTTCCGAAACCATCGCAGCCTTCTTCTG
TCGTTAGTCCATTGTCACCGGTCAATTTGCCCGCTGTTCCTAACGTTGGC
CAGACGCCCCATGAAATGGAGGATAGTCAGGCATCTAACGCCAATAAGGT
CTCTTCGCCTGTCAACAAGGCTTTCTTGCTTGGGTTTCTGGAAGGAGTTG
CGAAAGGAAATAAGTAACCTGGTCAATATTGTTTAATAGGACCCCGTCAG
TTATACATATGAGTCTCTAATGAAGTTAGCGGTCTGTTGCTTCATGATCT
TGAATTCAATTTGATATTGCCCATGCTACGG back to topCoding sequence (CDS) from alignment at ch1:3498672..3501752- >KJC3_001350-T1 ID=KJC3_001350-T1|Name=KJC3_001350-T1|organism=Aspergillus niger KJC3|type=CDS|length=5088bp|location=Sequence derived from alignment at ch1:3498672..3501752- (Aspergillus niger KJC3)
GGCTGGATGATTTGTGTGTTCGCTTCATCATTAACTTACCCCGAGAAGAG
CTCGAATCTGTTGAACGCATCTGTTTTCAGGTTGAAGAAGCACAATGGTT
CTACGAAGACTTCATTCGGCCGTTGGATCCGGCTCTTCCGTCCTTGTCCC
TGAAAGCCTTCGCTTTGCGCATCTTTCAGCATTGCCCATTGATGTCCCAA
TGGTCGCACTATCACCACATCACCGCGTTTTCCGAATTCTTGGCCTACAA
AACCCGGGTCCCGGTGCGCGGTGCCATCATGCTCAATCATGACATGGATG
AGGTGGTCTTAGTCAAAGGCTGGAAGAAGGGCGCCAACTGGAGTTTCCCA
CGAGGCAAAATCAACAAAGATGAGAAAGACATCGACTGTGCCATCCGGGA
AGTGTACGAGGAAACTGGTTTTGACGTTCGACAAGCTGGATTGGTCCAAG
ATGAGAAAGATGTCAAGTTCATCGAAATCACCATGAGAGAGCAGCACATG
AGGCTGTATGTTTTCCGGGGCGTGCCACAGGATGCTCATTTCGAGCCGCG
TACCCGCAAGGAGATCAGCAAGATTGAGTGGTACAAGCTGTCGGAGTTGC
CGACCCTCAAGAAGAGCAAGCAGCAAGATCAAGGCTTCGTCGTCGCCAAT
GCGAACAAGTTCTACATGGTAGCTCCGTTTATGCATCCCCTCAAGAAGTG
GATTGCCCAACAAAAGAGGCTTGAAGGAAAGCTGCCAGGTGGCCCGAAGT
TACCTATGCCGAACGACATGTCGATTGACGAAGCTTCCCATGCCGTGCAC
AGCTTCACACCAAACCAAGCCGCTGCGGAAATGGCTACGCCCAGTGACTT
GCCAGAACTTGCGTCGACCCAAGACGCCTCTGCTCACCTTAAGCGCCTTC
TCAATATTAACAATCTGGTTCCCCCTAAGAATCCATCGCCGGTCACCCAT
TCGCCAGTGTCCGGGCCTAGTGCCTCTAAATCTAATGCTCTCTTAGAGCT
GCTGAGGACCGGCTCGTCTCGTGAATCCCTTCCACAAGCCCCTATTCCAG
AGCAGCAATCGACTCCAGCACCTCCCCCAGGAAGTGTGCCTCCTGTGAGT
CGGCCTCATCCCGCGATGGGCTTCTTCCCGGGCTTTCCTCAACAAGGCCC
TCATGTCGGGGTACCTCCCAGCTTGCCGTCATACCCACAACCAAATCACG
GTCCTGTACCACATCTACCAGCATCCATTGTCAATGCAATGTCTCATGGC
CCGTTGAATCAAATACCGCTTTCTGCCGCTCCTCCGGGGCCATCGGGCAA
TTTTCACGGAACGTTCCCCCCTCAACAGTCGCTTGCATCACACTTCTACA
AGGAGACAGGTTCACTGGCAGAACTCGCTCCCGCTCCGCAGAGTCAAGCC
GCCCCTGCCCCCTACCATCGCACGGGTGATCCTCAATTCTCTCAATCAGG
TCAGCCTTCCCAAGTTCAGGGTGCGACTGTGCCACCGGCGAGCAAGTTGC
CTCCACCGAAGCTTACGAGCCATTCACTGGCTCTGTTGAATGTTTTTAAG
GATGACTCGACCAAAACACCCAAGACGCCTAAGGCGACCTTGGTGTCACA
TACAGGAGCGGCACCAGCCAATGAACGAAGATCATCACAGCATCAGGATC
AGCTCCTTAATCTGCTGAGAGGGTCCCCGGCTCCTGCTGTCTCTGGGCCG
GCCGAACTATCGGGTCAGTCAGTGTCCCCGGCTAGAAAACAAGTCCTTCA
ACGGCCCCGGGGTGACCAGAGCCCTGCGCGGCGCAGTTCGCCCGCTGCTA
AACCATGGACTTCTGCACCAGCCTCTGGACCGACCATGCATACTCTACAG
CCTGGAACTCAAAAGCCATCGAGAAAGGGACAGAATGGGCCGAATCGCAA
AGGACCCAGAACTGAGCAGGCATCAGCTGTCACGGCCCCTATAACAATCC
TGGCAAGGCCGCAAGCCGCTAAGGAACAGCCTTCCGCCCGCGCTCCTCCG
CAATCCTCCCGTCCTCCCTCCCAGCCTAGGGGGCCGAAACCCAGTTCTCC
AGAGCCACCGAAACCCTTCCAGCCGCAAATTCTACGTCGCTCTGATCATC
CAAATGCGATCAATCTTCTCCCGATTCGGACTGCACTCAATGAGAATCAA
GATCAACAGGCCGCCGCGCGCTCCACAGAATCTCCTCGGCATTCGCAGCC
TCAACCGAGCTTCGACCGTCGACCGAGTCAAACTGTTGCGCAAAAGGAGA
TGCTCTTGTCACTCTTTGGCAAATCATCTGTCTCCCCAAACATTTCTCCT
GCGGAACTGAGCGCATCTGTTCCGAAACCATCGCAGCCTTCTTCTGTCGT
TAGTCCATTGTCACCGGTCAATTTGCCCGCTGTTCCTAACGTTGGCCAGA
CGCCCCATGAAATGGAGGATAGTCAGGCATCTAACGCCAATAAGGTCTCT
TCGCCTGTCAACAAGGCTTTCTTGCTTGGGTTTCTGGAAGGAGTTGCGAA
AGGAAATAAGTAAATGACAGAAACAAAGATGCAGTTGGAAGACTGGCTGG
ATGATTTGTGTGTTCGCTTCATCATTAACTTACCCCGAGAAGAGCTCGAA
TCTGTTGAACGCATCTGTTTTCAGGTTGAAGAAGCACAATGGTTCTACGA
AGACTTCATTCGGCCGTTGGATCCGGCTCTTCCGTCCTTGTCCCTGAAAG
CCTTCGCTTTGCGCATCTTTCAGCATTGCCCATTGATGTCCCAATGGTCG
CACTATCACCACATCACCGCGTTTTCCGAATTCTTGGCCTACAAAACCCG
GGTCCCGGTGCGCGGTGCCATCATGCTCAATCATGACATGGATGAGGTGG
TCTTAGTCAAAGGCTGGAAGAAGGGCGCCAACTGGAGTTTCCCACGAGGC
AAAATCAACAAAGATGAGAAAGACATCGACTGTGCCATCCGGGAAGTGTA
CGAGGAAACTGGTTTTGACGTTCGACAAGCTGGATTGGTCCAAGATGAGA
AAGATGTCAAGTTCATCGAAATCACCATGAGAGAGCAGCACATGAGGCTG
TATGTTTTCCGGGGCGTGCCACAGGATGCTCATTTCGAGCCGCGTACCCG
CAAGGAGATCAGCAAGATTGAGTGGTACAAGCTGTCGGAGTTGCCGACCC
TCAAGAAGAGCAAGCAGCAAGATCAAGGCTTCGTCGTCGCCAATGCGAAC
AAGTTCTACATGGTAGCTCCGTTTATGCATCCCCTCAAGAAGTGGATTGC
CCAACAAAAGAGGCTTGAAGGAAAGCTGCCAGGTGGCCCGAAGTTACCTA
TGCCGAACGACATGTCGATTGACGAAGCTTCCCATGCCGTGCACAGCTTC
ACACCAAACCAAGCCGCTGCGGAAATGGCTACGCCCAGTGACTTGCCAGA
ACTTGCGTCGACCCAAGACGCCTCTGCTCACCTTAAGCGCCTTCTCAATA
TTAACAATCTGGTTCCCCCTAAGAATCCATCGCCGGTCACCCATTCGCCA
GTGTCCGGGCCTAGTGCCTCTAAATCTAATGCTCTCTTAGAGCTGCTGAG
GACCGGCTCGTCTCGTGAATCCCTTCCACAAGCCCCTATTCCAGAGCAGC
AATCGACTCCAGCACCTCCCCCAGGAAGTGTGCCTCCTGTGAGTCGGCCT
CATCCCGCGATGGGCTTCTTCCCGGGCTTTCCTCAACAAGGCCCTCATGT
CGGGGTACCTCCCAGCTTGCCGTCATACCCACAACCAAATCACGGTCCTG
TACCACATCTACCAGCATCCATTGTCAATGCAATGTCTCATGGCCCGTTG
AATCAAATACCGCTTTCTGCCGCTCCTCCGGGGCCATCGGGCAATTTTCA
CGGAACGTTCCCCCCTCAACAGTCGCTTGCATCACACTTCTACAAGGAGA
CAGGTTCACTGGCAGAACTCGCTCCCGCTCCGCAGAGTCAAGCCGCCCCT
GCCCCCTACCATCGCACGGGTGATCCTCAATTCTCTCAATCAGGTCAGCC
TTCCCAAGTTCAGGGTGCGACTGTGCCACCGGCGAGCAAGTTGCCTCCAC
CGAAGCTTACGAGCCATTCACTGGCTCTGTTGAATGTTTTTAAGGATGAC
TCGACCAAAACACCCAAGACGCCTAAGGCGACCTTGGTGTCACATACAGG
AGCGGCACCAGCCAATGAACGAAGATCATCACAGCATCAGGATCAGCTCC
TTAATCTGCTGAGAGGGTCCCCGGCTCCTGCTGTCTCTGGGCCGGCCGAA
CTATCGGGTCAGTCAGTGTCCCCGGCTAGAAAACAAGTCCTTCAACGGCC
CCGGGGTGACCAGAGCCCTGCGCGGCGCAGTTCGCCCGCTGCTAAACCAT
GGACTTCTGCACCAGCCTCTGGACCGACCATGCATACTCTACAGCCTGGA
ACTCAAAAGCCATCGAGAAAGGGACAGAATGGGCCGAATCGCAAAGGACC
CAGAACTGAGCAGGCATCAGCTGTCACGGCCCCTATAACAATCCTGGCAA
GGCCGCAAGCCGCTAAGGAACAGCCTTCCGCCCGCGCTCCTCCGCAATCC
TCCCGTCCTCCCTCCCAGCCTAGGGGGCCGAAACCCAGTTCTCCAGAGCC
ACCGAAACCCTTCCAGCCGCAAATTCTACGTCGCTCTGATCATCCAAATG
CGATCAATCTTCTCCCGATTCGGACTGCACTCAATGAGAATCAAGATCAA
CAGGCCGCCGCGCGCTCCACAGAATCTCCTCGGCATTCGCAGCCTCAACC
GAGCTTCGACCGTCGACCGAGTCAAACTGTTGCGCAAAAGGAGATGCTCT
TGTCACTCTTTGGCAAATCATCTGTCTCCCCAAACATTTCTCCTGCGGAA
CTGAGCGCATCTGTTCCGAAACCATCGCAGCCTTCTTCTGTCGTTAGTCC
ATTGTCACCGGTCAATTTGCCCGCTGTTCCTAACGTTGGCCAGACGCCCC
ATGAAATGGAGGATAGTCAGGCATCTAACGCCAATAAGGTCTCTTCGCCT
GTCAACAAGGCTTTCTTGCTTGGGTTTCTGGAAGGAGTTGCGAAAGGAAA
TAAGTAAATGACAGAAACAAAGATGCAGTTGGAAGACT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
| GO:0030145 | manganese ion binding |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001350-T1.utr3p1 | KJC3_001350-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001350-T1.utr5p1 | KJC3_001350-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR015797 |
| DBxref | InterPro:IPR020084 |
| DBxref | InterPro:IPR036189 |
| DBxref | InterPro:IPR000086 |
| DBxref | InterPro:IPR007722 |
| DBxref | PFAM:PF00293 |
| DBxref | PFAM:PF05026 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3498672..3501752 - |
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