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KJC3_001352-T1, KJC3_001352-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001352-T1
Unique NameKJC3_001352-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3501961..3504571-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001352-T1 ID=KJC3_001352-T1|Name=KJC3_001352-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2611bp|location=Sequence derived from alignment at ch1:3501961..3504571- (Aspergillus niger KJC3)
CCCGCGTGCAAAACTACTATTACTACGATTTTATTGTATAAATCCACCGT
ATTGCCCTCCGCCCCTCACACCACAAATATGCCCGGAAAAGAGTTACCTG
ATCGCTGCATGAATTGTCATGAGGCTGAACCGGCCTTTCTATTGCGCGAG
CGTCATGTCTGCCAGTACGTCTCGCCCCAAAGTACACCTGTTGCCGCTAC
TAGTCCATACTGATCTCAGTTACCCCTCCATCCAGAGAATGTTATATTCG
ATTCTTGAACTTCAAGCCATTCAGGCGCATGGAACGGTATCGTCTCCGGA
GGAATATGCCACAGACCGGTCCCTGCAAATTGCTGCTCCCCCTTTCGTAC
GGCGTCTCCTCCACTGTGCTATTGCACATGCTGCACCGGCAGTTGGAGGC
ACTACGCTCAAAAAGACATGGTCCCGCGGGCTTCGAAATCCTCGTCCTCG
TCGTTGAGCCTTCGACAATCTCCCCCGTTCCTCCGCACGAAGAAGGCTTT
GCACTCGCGCAGCAGACCTTCCCGCTCTGTTCCTTCACCCGGCTCCCCTT
CCACAGTATCTTCGAGCTTGACCCGGATGTCCATCAAATCATGTCGCAGT
ATGCCGGGGAGCACTTCACAGATGACACTTCGCTGTCCGATGAGGAGCGT
TTGAATCGCTTCCGCAGGTCGATTACAACAGCCACATCCAAGTCCGATGT
CGACCAAATTTTGTTGAACAAACTTGTCGTTGCTTTCGCAAAGAAAATGG
AATGCCGCGGCATAGTATGGGGTGACTCGGATAGCAAGCTCGCTGCAAAG
ACCCTCGCCAACGTCGCGAAAGGACGCGGCTCTGCAGTGACGTGGCAGGT
GTGCGATGGAATGTCGCCTTTTGGCCTAGAATTCAACTTCCCGCTTCGGG
ACGTGTTCACGGCAGAGATACGCACCTATGCCACCCTCTTTCCCGAGCTG
GCTGGCATCATCGTTCATGACGAGCCTCCCTCAGAGAATACGCTTACCAA
GAATCTGTCGATCGATGAGCTGATGATCCGTTATGTCAGCACTCAGGGTG
AGAAATACCCCGGCGTCATGTTGAACGTAACTAGGACTGCCAGTAAGCTC
CAGTCGTCTGGTACATCTATCGGCGGACTGCAGTGCAATTTCTGCGGGGC
CTTCATGACTACAAATGAGAATATCACGGGCGAACAAGGCAACGAACAGC
TTCAATTCTGCTATGCCTGTGCTCGGTCCCAACCCGAATTGAGCTGTTAA
ATGAAGTTTCAATTACTGGTATACCTATGCCGTGTTTGTGGGTAGGCATA
ATCCACCTAACTGTTCCCAGTTCCTCTATCTGTGACATCATCATGGCCGC
CGAGAGGGCCGGGAGTTATCGATCACTCCACTCTCAAGGTCATCCTCCGG
TTGGGCTCTTCCTCCGAACCATCTGCCTTTTGAACGGCTTTTCTTGGGAT
GCCGTGCTGCTTGAGGCTTCGCTGGACCATCAGTGTTCCTACTGTGTGGT
TGGCCTTTATGACTAGATGGCTCACCCGAGGTATCGTCGTCATAGCGGTC
GAACTCGTCCGGCAAGCTCATATCCGCTGTATTCTGCCTCCGCTCTTGTT
TGGAAAGCGCCTTGGCCCCCTTTTCCCGCAGATGCTTTTCCAGGAGCACG
GCGTTCCGCGTGTTGCACTTGTACACGGCATCGGCAACATCACCTATGAA
AGGAACCAGGCCGATGAAGAAATCAATCACGATATTCATGAGCATCATCA
TTCGCAGCCGCGATGGGAGGCCCCCGTCGATTTTGTCACAGGTGTGCACC
ACCATTAAAGCCAATGCAGCATCTGCTCCATCGCCAATACTATTTTGAAT
CCTTGCATGAGTCTTGGATTGCATACCATGTGCAGGGATTGCAACTTACA
ATGGGAATAGACCTATCACACTCCCCCATCCGAATCGGATTCCACACAAG
CTAAAGAGACATAAGTCCAAGCGATACGCTCTTCTTTTTACTTGCGTCAA
GACCTTGCTGTCGTTCTGCGATAGACCGGGAGGTACTGCTTTGCGTCGCT
TTTGTGTCTTCTTCCCGAACGCGCGATTCAGGCGTGATGCAGGAACCTCT
TCGAAATATGGGTCCTACAGCAACACACACAGTCTTAGCCCATAGTTCGC
TAGAGTAGGATGGTTCAGAAAATGGAATGGGCTTTACCTCTTGTCCGAAA
TGATTTCGGGCGGATTCTGCGAGAATCTTCTTGCCCACTAGATTTGCCAG
TTGCGCCGACATAGCTTAGGAGCTGACAGAATTGGATTATGGAAGGATCT
CGGGGTAAGGGGAAGAAAGCTCTGTATTAAAGGGGGGGAAAGCAAAAGGA
TGTTGGAATGTTCCGGTTCGATCAGACACCCTCTTCAGGAGGGGGACGGT
CGGCTGGCTATATAACCGCCAAGCCCTCAGGAGCAGGTGTGTGTATGTAT
GTATGTTTTTGTGCAGATTCTATAAAGGATCTCTGATGTAGGCGCCTTAT
TTTTGGACAAAGGGGTTTCGGGCGGCTTTTTAAAACCATGGGATATATTG
TGCGACAGCCAGTCAACGAAGACAACGTCGACAATGACCTGAATTTCTGG
AACACGAGCCG
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Coding sequence (CDS) from alignment at ch1:3501961..3504571-

>KJC3_001352-T1 ID=KJC3_001352-T1|Name=KJC3_001352-T1|organism=Aspergillus niger KJC3|type=CDS|length=2202bp|location=Sequence derived from alignment at ch1:3501961..3504571- (Aspergillus niger KJC3)
AGAATGTTATATTCGATTCTTGAACTTCAAGCCATTCAGGCGCATGGAAC
GGTATCGTCTCCGGAGGAATATGCCACAGACCGGTCCCTGCAAATTGCTG
CTCCCCCTTTCGTACGGCGTCTCCTCCACTGTGCTATTGCACATGCTGCA
CCGGCAGTTGGAGGCACTACGCTCAAAAAGACATGGTCCCGCGGGCTTCG
AAATCCTCGTCCTCGTCGTTGAGCCTTCGACAATCTCCCCCGTTCCTCCG
CACGAAGAAGGCTTTGCACTCGCGCAGCAGACCTTCCCGCTCTGTTCCTT
CACCCGGCTCCCCTTCCACAGTATCTTCGAGCTTGACCCGGATGTCCATC
AAATCATGTCGCAGTATGCCGGGGAGCACTTCACAGATGACACTTCGCTG
TCCGATGAGGAGCGTTTGAATCGCTTCCGCAGGTCGATTACAACAGCCAC
ATCCAAGTCCGATGTCGACCAAATTTTGTTGAACAAACTTGTCGTTGCTT
TCGCAAAGAAAATGGAATGCCGCGGCATAGTATGGGGTGACTCGGATAGC
AAGCTCGCTGCAAAGACCCTCGCCAACGTCGCGAAAGGACGCGGCTCTGC
AGTGACGTGGCAGGTGTGCGATGGAATGTCGCCTTTTGGCCTAGAATTCA
ACTTCCCGCTTCGGGACGTGTTCACGGCAGAGATACGCACCTATGCCACC
CTCTTTCCCGAGCTGGCTGGCATCATCGTTCATGACGAGCCTCCCTCAGA
GAATACGCTTACCAAGAATCTGTCGATCGATGAGCTGATGATCCGTTATG
TCAGCACTCAGGGTGAGAAATACCCCGGCGTCATGTTGAACGTAACTAGG
ACTGCCAGTAAGCTCCAGTCGTCTGGTACATCTATCGGCGGACTGCAGTG
CAATTTCTGCGGGGCCTTCATGACTACAAATGAGAATATCACGGGCGAAC
AAGGCAACGAACAGCTTCAATTCTGCTATGCCTGTGCTCGGTCCCAACCC
GAATTGAGCTGTTAAATGCCCGGAAAAGAGTTACCTGATCGCTGCATGAA
TTGTCATGAGGCTGAACCGGCCTTTCTATTGCGCGAGCGTCATGTCTGCC
AAGAATGTTATATTCGATTCTTGAACTTCAAGCCATTCAGGCGCATGGAA
CGGTATCGTCTCCGGAGGAATATGCCACAGACCGGTCCCTGCAAATTGCT
GCTCCCCCTTTCGTACGGCGTCTCCTCCACTGTGCTATTGCACATGCTGC
ACCGGCAGTTGGAGGCACTACGCTCAAAAAGACATGGTCCCGCGGGCTTC
GAAATCCTCGTCCTCGTCGTTGAGCCTTCGACAATCTCCCCCGTTCCTCC
GCACGAAGAAGGCTTTGCACTCGCGCAGCAGACCTTCCCGCTCTGTTCCT
TCACCCGGCTCCCCTTCCACAGTATCTTCGAGCTTGACCCGGATGTCCAT
CAAATCATGTCGCAGTATGCCGGGGAGCACTTCACAGATGACACTTCGCT
GTCCGATGAGGAGCGTTTGAATCGCTTCCGCAGGTCGATTACAACAGCCA
CATCCAAGTCCGATGTCGACCAAATTTTGTTGAACAAACTTGTCGTTGCT
TTCGCAAAGAAAATGGAATGCCGCGGCATAGTATGGGGTGACTCGGATAG
CAAGCTCGCTGCAAAGACCCTCGCCAACGTCGCGAAAGGACGCGGCTCTG
CAGTGACGTGGCAGGTGTGCGATGGAATGTCGCCTTTTGGCCTAGAATTC
AACTTCCCGCTTCGGGACGTGTTCACGGCAGAGATACGCACCTATGCCAC
CCTCTTTCCCGAGCTGGCTGGCATCATCGTTCATGACGAGCCTCCCTCAG
AGAATACGCTTACCAAGAATCTGTCGATCGATGAGCTGATGATCCGTTAT
GTCAGCACTCAGGGTGAGAAATACCCCGGCGTCATGTTGAACGTAACTAG
GACTGCCAGTAAGCTCCAGTCGTCTGGTACATCTATCGGCGGACTGCAGT
GCAATTTCTGCGGGGCCTTCATGACTACAAATGAGAATATCACGGGCGAA
CAAGGCAACGAACAGCTTCAATTCTGCTATGCCTGTGCTCGGTCCCAACC
CGAATTGAGCTGTTAAATGCCCGGAAAAGAGTTACCTGATCGCTGCATGA
ATTGTCATGAGGCTGAACCGGCCTTTCTATTGCGCGAGCGTCATGTCTGC
CA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0000049tRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0034227tRNA thio-modification
GO:0002098tRNA wobble uridine modification
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NCS2KJC3_001352Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001352-T1KJC3_001352-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001352-T1.cdsKJC3_001352-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001352-T1.utr3p1KJC3_001352-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001352-T1.exon2KJC3_001352-T1.exon2Aspergillus niger KJC3exon
KJC3_001352-T1.exon1KJC3_001352-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001352-T1.utr5p1KJC3_001352-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR019407
DBxrefInterPro:IPR014729
Productcytoplasmic tRNA 2-thiolation protein 2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3501961..3504571 -
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