You are here

Home

KJC3_001361-T1, KJC3_001361-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001361-T1
Unique NameKJC3_001361-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3524921..3525768+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001361-T1 ID=KJC3_001361-T1|Name=KJC3_001361-T1|organism=Aspergillus niger KJC3|type=mRNA|length=848bp|location=Sequence derived from alignment at ch1:3524921..3525768+ (Aspergillus niger KJC3)
CCCCCATTGTCAATTCCCCGCTACACTCAACCTCTCCCTCTCCCTCCTAT
GTCCACATACTACGGAGTACTATCCCTCAATATTTTCAGAATGTCCGCTC
CAGACAACCAAGCTAATCCTCCCCCTCCACCCCCACCACCATCAGACCCT
CGCACCAAAATATCCCCTTTCGTACGGAACCTCCGAACCGCCCCGCCCCG
TTCCCTCGCTGTCTCCCAACCACCTCCTCCACCCACCACAGCAGCCCCAA
CAGGCCCATACTTTCTCTACGGTACCTTGATGGATCCCTCCATGTTAGGA
GATATCCTATCCTTGGACTCAGATCAAGATATCGATTTACGACCTGCATA
TATATCAGGCTACGCTTGTAAACTGTGGGGACAGTATCCGGCTCTAGTAC
CGGATGTCACTTCTACCTCGGTGGTCAAAGGTGTCGTGTATCATGTGCCT
TCTGTGGAGGATGGAGTGAAGTTGGCAAATTATGAGACGGGGTGGTATCG
CGCTGAGTCTTGTGAGGTCGTGTATACGGATGGGGAGGAGCCTGGGAGGG
AGGGTGGACATGTATTTGTGTTTGTGGGAGATGAGGGGGAATTGAGTGAG
GGTGTGTTTGATCTCAGGGTCTGGCTAGCGAGGATGGGGAGGAAGGCGGG
TAAGTGAGGTTAGACAGGCTGGAAATGGAGACAAGTCAATTATCTGTCCC
CGATATTTCGACGAGAGATATCATAGTACCTAAAACCATGTCGGTCGTGG
CATCTGATGGCGACTAGTCAAACCTGCATTTACACGCTTCGTCATATTGA
TACCTTAATGCTCCAGTTGAAATCTAGAGAATATCATCTCTTTTGTGT
back to top

Coding sequence (CDS) from alignment at ch1:3524921..3525768+

>KJC3_001361-T1 ID=KJC3_001361-T1|Name=KJC3_001361-T1|organism=Aspergillus niger KJC3|type=CDS|length=609bp|location=Sequence derived from alignment at ch1:3524921..3525768+ (Aspergillus niger KJC3)
ATGTCCACATACTACGGAGTACTATCCCTCAATATTTTCAGAATGTCCGC
TCCAGACAACCAAGCTAATCCTCCCCCTCCACCCCCACCACCATCAGACC
CTCGCACCAAAATATCCCCTTTCGTACGGAACCTCCGAACCGCCCCGCCC
CGTTCCCTCGCTGTCTCCCAACCACCTCCTCCACCCACCACAGCAGCCCC
AACAGGCCCATACTTTCTCTACGGTACCTTGATGGATCCCTCCATGTTAG
GAGATATCCTATCCTTGGACTCAGATCAAGATATCGATTTACGACCTGCA
TATATATCAGGCTACGCTTGTAAACTGTGGGGACAGTATCCGGCTCTAGT
ACCGGATGTCACTTCTACCTCGGTGGTCAAAGGTGTCGTGTATCATGTGC
CTTCTGTGGAGGATGGAGTGAAGTTGGCAAATTATGAGACGGGGTGGTAT
CGCGCTGAGTCTTGTGAGGTCGTGTATACGGATGGGGAGGAGCCTGGGAG
GGAGGGTGGACATGTATTTGTGTTTGTGGGAGATGAGGGGGAATTGAGTG
AGGGTGTGTTTGATCTCAGGGTCTGGCTAGCGAGGATGGGGAGGAAGGCG
GGTAAGTGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001361KJC3_001361Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001361-T1.utr5p1KJC3_001361-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001361-T1.exon1KJC3_001361-T1.exon1Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001361-T1.cdsKJC3_001361-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001361-T1.utr3p1KJC3_001361-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001361-T1KJC3_001361-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036568
DBxrefInterPro:IPR013024
DBxrefInterPro:IPR009288
DBxrefPFAM:PF06094
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3524921..3525768 +
Powered by Drupal