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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3540927..3543004+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001370-T1 ID=KJC3_001370-T1|Name=KJC3_001370-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2078bp|location=Sequence derived from alignment at ch1:3540927..3543004+ (Aspergillus niger KJC3)
AGACCCTTTGTCTTTCACAAGGAAAATTTAGATCCCCAATCGTACAAGAG
TCGCAGTGTCTGACGCTGCTTCTTTGTTTGTTTTCTCCCTCTCTGCGCGA
CTTATTCGATCATGGCTGAACTTCGTAAGGTGCCTGCCAGCCAGGCGGCG
GTATGTCTATCCCTTTCTTCATCACCTCCCCCCTTTGAAAAGCCCTAATT
GGCTAACAGCTCCCTTTTGACTTTGACAGCAGCAGCAGCAGCAGCCCATT
CACAATGACGATAATGTCCCCAGTCTGAAGACCCTCAAGGACGCCATTCC
CGAGGAATGCTTCGACTCCTCTGTTGTCACCTCCCTCCTCTACCTCGCCC
GCGACATCCTCTACTGCGCCATCCTCACCTACGGCGCCTTCCACATCCAC
CTCCTCCCCTCTCTGCCGCTGCGCGCCCTCGCCTGGGCTGTCTACGGCTT
CTTCCAGGGCTGCGTCGGCACCGGAATATGGATTCTGGCTCATGAATGCG
GTCATGGTGCCTTCTCCAAGCATCAGACCTTCAACGACATTGTCGGCTGG
GCTGCCCACTCCTTCCTGATGGTCCCCTACTTCTCCTGGAAGATCACCCA
TGCCCGCCACCACCGCTACACCGGCCACATGGAGAAGGACACCGTCTTCG
TCCCCTGGACCGACAATGAGCTGGCCAAGAAGAAGAACGTCCGCATCGAG
CAGCTCAAGCATCTCACCGAGGAAACCCCCATCGTCTCCTTCCTGCAACT
CATCGGCCACCAGCTCTTCGGATGGCAGCTGTACCTCTTCCTGAATGTCA
CCGCCGGTCCCAAGAGTCTGCCCGAGAATCGTCCCATCCGTGGCGCGGCC
AGCCACTTCAACCCCTTCGGCGACCTTTTCACCAAGTCGCAGTATTTCAG
CATTGCCTTGACTGATTTGGGTCTGCTTATCATGGGTTCGATTCTGTACT
ACGCCTCTACGCAGATTGGCGCATGGAATGTCGTCCTTCTGTACTTTGTT
CCCTACCTGTGGGTGCATCACTGGCTGAGTATGTTTCTCTCCTTTTATTT
CTAGAGTTTGTTGAAGAAGAAGAAGTGCTAACAAACGAAACAGTCGCCAT
CACCTACTTGCAGCACACCCACCCCGCTGTCCCCCACTACACTGCCGAAT
CCTGGACCTACACCAAGGGTGCCCTTGCCACCATTGACCGGAGCATCGGC
TTCATCGGCCGCCACTTCTTCCACGAAATCATCGACTACCATGTCGTTCA
CCACCTGTTCAGCCGGATTCCCTTCTACAAGGCCGAGGAGGCTACCCGCG
CTATTCAGCCGCTGTTGGGGGTTAACTACCACGAGGAGAAGGAGAGCAGC
TTCTTGTACTCGCTCATGACCACCTTCCGGAAGTGCATCTACGTTTCGGA
TGGCAAGAAGAACGGTGTGTTGCATTTTGTCCTTCCCGAGGAGGCAAAGT
AGACGTGCGTAATATATTTGGGTGATTGAATGTTGTGGTGTTCGTGGGTG
TGGTTTACTAGTAAATTAGAGTACAATATGCATATATAGACTGTTGATAG
ACTTTGATAGACGATCACAATGTATTATAGACTCAAAGCTACTAGAACGC
GATATGTGTTCATGTTCAAAATTCTACAGAAGAACCAAGACCATTGGTGA
AGCAACCAACATCACTGTCGACTACAAAAGAGATCCTTAATCTGGGACAT
TATACTCTCGCCACTTTTCACTGCAAAGGTTAGCTAGTATCAACTAATAC
ATTAAACGGACTTACCATCGTCTCTTCTGAAAAACTCCTCCAACTTCGCA
TTCAGATCTTCGCTGAGCCTACCGGTGCATTCGAACACATCTCGTTTCTT
ATCGTTCTCGAGGATGATTGTATACCAATCAGATCCGTCGTTCCTGTCAT
TGCTCCACAGAATCTTCAGGCCATGCGCCCGGCATTGGGCCAGGACTGAT
GCCGAGAGGTGCGGTTGCTGAGGGTGGGCCATGATCGCCGGGGTTGTCTG
GAAGTGTAAGCCGAGGAAGATAATCAATGTATCAATCGAAATGAGGACTC
ACCTATGCAAAGACGGACAAGGAGTAAG back to topCoding sequence (CDS) from alignment at ch1:3540927..3543004+ >KJC3_001370-T1 ID=KJC3_001370-T1|Name=KJC3_001370-T1|organism=Aspergillus niger KJC3|type=CDS|length=3591bp|location=Sequence derived from alignment at ch1:3540927..3543004+ (Aspergillus niger KJC3)
ATGGCTGAACTTCGTAAGGTGCCTGCCAGCCAGGCGGCGCAGCAGCAGCA
GCAGCCCATTCACAATGACGATAATGTCCCCAGTCTGAAGACCCTCAAGG
ACGCCATTCCCGAGGAATGCTTCGACTCCTCTGTTGTCACCTCCCTCCTC
TACCTCGCCCGCGACATCCTCTACTGCGCCATCCTCACCTACGGCGCCTT
CCACATCCACCTCCTCCCCTCTCTGCCGCTGCGCGCCCTCGCCTGGGCTG
TCTACGGCTTCTTCCAGGGCTGCGTCGGCACCGGAATATGGATTCTGGCT
CATGAATGCGGTCATGGTGCCTTCTCCAAGCATCAGACCTTCAACGACAT
TGTCGGCTGGGCTGCCCACTCCTTCCTGATGGTCCCCTACTTCTCCTGGA
AGATCACCCATGCCCGCCACCACCGCTACACCGGCCACATGGAGAAGGAC
ACCGTCTTCGTCCCCTGGACCGACAATGAGCTGGCCAAGAAGAAGAACGT
CCGCATCGAGCAGCTCAAGCATCTCACCGAGGAAACCCCCATCGTCTCCT
TCCTGCAACTCATCGGCCACCAGCTCTTCGGATGGCAGCTGTACCTCTTC
CTGAATGTCACCGCCGGTCCCAAGAGTCTGCCCGAGAATCGTCCCATCCG
TGGCGCGGCCAGCCACTTCAACCCCTTCGGCGACCTTTTCACCAAGTCGC
AGTATTTCAGCATTGCCTTGACTGATTTGGGTCTGCTTATCATGGGTTCG
ATTCTGTACTACGCCTCTACGCAGATTGGCGCATGGAATGTCGTCCTTCT
GTACTTTGTTCCCTACCTGTGGGTGCATCACTGGCTGATCGCCATCACCT
ACTTGCAGCACACCCACCCCGCTGTCCCCCACTACACTGCCGAATCCTGG
ACCTACACCAAGGGTGCCCTTGCCACCATTGACCGGAGCATCGGCTTCAT
CGGCCGCCACTTCTTCCACGAAATCATCGACTACCATGTCGTTCACCACC
TGTTCAGCCGGATTCCCTTCTACAAGGCCGAGGAGGCTACCCGCGCTATT
CAGCCGCTGTTGGGGGTTAACTACCACGAGGAGAAGGAGAGCAGCTTCTT
GTACTCGCTCATGACCACCTTCCGGAAGTGCATCTACGTTTCGGATGGCA
AGAAGAACGGTGTGTTGCATTTTGTCCTTCCCGAGGAGGCAAAGTAGATG
GCTGAACTTCGTAAGGTGCCTGCCAGCCAGGCGGCGCAGCAGCAGCAGCA
GCCCATTCACAATGACGATAATGTCCCCAGTCTGAAGACCCTCAAGGACG
CCATTCCCGAGGAATGCTTCGACTCCTCTGTTGTCACCTCCCTCCTCTAC
CTCGCCCGCGACATCCTCTACTGCGCCATCCTCACCTACGGCGCCTTCCA
CATCCACCTCCTCCCCTCTCTGCCGCTGCGCGCCCTCGCCTGGGCTGTCT
ACGGCTTCTTCCAGGGCTGCGTCGGCACCGGAATATGGATTCTGGCTCAT
GAATGCGGTCATGGTGCCTTCTCCAAGCATCAGACCTTCAACGACATTGT
CGGCTGGGCTGCCCACTCCTTCCTGATGGTCCCCTACTTCTCCTGGAAGA
TCACCCATGCCCGCCACCACCGCTACACCGGCCACATGGAGAAGGACACC
GTCTTCGTCCCCTGGACCGACAATGAGCTGGCCAAGAAGAAGAACGTCCG
CATCGAGCAGCTCAAGCATCTCACCGAGGAAACCCCCATCGTCTCCTTCC
TGCAACTCATCGGCCACCAGCTCTTCGGATGGCAGCTGTACCTCTTCCTG
AATGTCACCGCCGGTCCCAAGAGTCTGCCCGAGAATCGTCCCATCCGTGG
CGCGGCCAGCCACTTCAACCCCTTCGGCGACCTTTTCACCAAGTCGCAGT
ATTTCAGCATTGCCTTGACTGATTTGGGTCTGCTTATCATGGGTTCGATT
CTGTACTACGCCTCTACGCAGATTGGCGCATGGAATGTCGTCCTTCTGTA
CTTTGTTCCCTACCTGTGGGTGCATCACTGGCTGATCGCCATCACCTACT
TGCAGCACACCCACCCCGCTGTCCCCCACTACACTGCCGAATCCTGGACC
TACACCAAGGGTGCCCTTGCCACCATTGACCGGAGCATCGGCTTCATCGG
CCGCCACTTCTTCCACGAAATCATCGACTACCATGTCGTTCACCACCTGT
TCAGCCGGATTCCCTTCTACAAGGCCGAGGAGGCTACCCGCGCTATTCAG
CCGCTGTTGGGGGTTAACTACCACGAGGAGAAGGAGAGCAGCTTCTTGTA
CTCGCTCATGACCACCTTCCGGAAGTGCATCTACGTTTCGGATGGCAAGA
AGAACGGTGTGTTGCATTTTGTCCTTCCCGAGGAGGCAAAGTAGATGGCT
GAACTTCGTAAGGTGCCTGCCAGCCAGGCGGCGCAGCAGCAGCAGCAGCC
CATTCACAATGACGATAATGTCCCCAGTCTGAAGACCCTCAAGGACGCCA
TTCCCGAGGAATGCTTCGACTCCTCTGTTGTCACCTCCCTCCTCTACCTC
GCCCGCGACATCCTCTACTGCGCCATCCTCACCTACGGCGCCTTCCACAT
CCACCTCCTCCCCTCTCTGCCGCTGCGCGCCCTCGCCTGGGCTGTCTACG
GCTTCTTCCAGGGCTGCGTCGGCACCGGAATATGGATTCTGGCTCATGAA
TGCGGTCATGGTGCCTTCTCCAAGCATCAGACCTTCAACGACATTGTCGG
CTGGGCTGCCCACTCCTTCCTGATGGTCCCCTACTTCTCCTGGAAGATCA
CCCATGCCCGCCACCACCGCTACACCGGCCACATGGAGAAGGACACCGTC
TTCGTCCCCTGGACCGACAATGAGCTGGCCAAGAAGAAGAACGTCCGCAT
CGAGCAGCTCAAGCATCTCACCGAGGAAACCCCCATCGTCTCCTTCCTGC
AACTCATCGGCCACCAGCTCTTCGGATGGCAGCTGTACCTCTTCCTGAAT
GTCACCGCCGGTCCCAAGAGTCTGCCCGAGAATCGTCCCATCCGTGGCGC
GGCCAGCCACTTCAACCCCTTCGGCGACCTTTTCACCAAGTCGCAGTATT
TCAGCATTGCCTTGACTGATTTGGGTCTGCTTATCATGGGTTCGATTCTG
TACTACGCCTCTACGCAGATTGGCGCATGGAATGTCGTCCTTCTGTACTT
TGTTCCCTACCTGTGGGTGCATCACTGGCTGATCGCCATCACCTACTTGC
AGCACACCCACCCCGCTGTCCCCCACTACACTGCCGAATCCTGGACCTAC
ACCAAGGGTGCCCTTGCCACCATTGACCGGAGCATCGGCTTCATCGGCCG
CCACTTCTTCCACGAAATCATCGACTACCATGTCGTTCACCACCTGTTCA
GCCGGATTCCCTTCTACAAGGCCGAGGAGGCTACCCGCGCTATTCAGCCG
CTGTTGGGGGTTAACTACCACGAGGAGAAGGAGAGCAGCTTCTTGTACTC
GCTCATGACCACCTTCCGGAAGTGCATCTACGTTTCGGATGGCAAGAAGA
ACGGTGTGTTGCATTTTGTCCTTCCCGAGGAGGCAAAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001370-T1.utr5p1 | KJC3_001370-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001370-T1.utr3p1 | KJC3_001370-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR005804 |
| DBxref | PFAM:PF00487 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3540927..3543004 + |
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