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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3545223..3546509+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001373-T1 ID=KJC3_001373-T1|Name=KJC3_001373-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1287bp|location=Sequence derived from alignment at ch1:3545223..3546509+ (Aspergillus niger KJC3)
CAGCTATTTAAGGACCTCAGCATGGCATTGCAAATCTCATCTTCCCAGTC
TAGAAAGCATCAGAATCGTTGTCAACATGCCATCCTTTTCCGCACAATCC
ACCAGTGAAGAAGTCTGCCAAGTCCTGGCGGACCACATCAAAGGGAGCAA
AGGTACGTCCAACCATCCCTCCTCAGTATTTCCGGATCATAAGAAGAATC
TAACCTCTCAGTCCTCATTACTGGCGTCACACTCGGCAGTGTTGGCGGCG
AGGCGGCTCTTCAGCTCTCCCGCCACGCGCCGGCTCTCTTGGTCCTGGCT
GGTCGCAACCTGGAGACTCTCCAGGCCACCGAAAATGCCATCAAAGCCGA
GACACCGGATGCCAACACCCGACTGCTCATTATAGATTTGAGCTCGCAGG
AAAGCGTCCGCAGGGCAGCTGCGGAGGTGAATAACTATCCAGAGCGCCTT
GACCATCTTATCAACAACGCAGGCATCATGGCGGCACCGTACTCGACCAC
GCCAGAGGGAGTGGAACTGCAGTTTGGAATAAATCACATTGGCCACTTCC
TATTCACGAACCTGCTCTTGGAGAAGATCATGAGCGGGGAGTCCAAGGTT
CGGGTCGTGAATGTCAGTAGTGCCGGCCATAAGCGTGGACCTGTGAGGTT
TGGGGATGTGAATTTCGAGGTTTGTGCAGTCCCGTGGTTTATTCTTTCGT
TCGGTTGCACGCGAGCAAGGGAGATTTAATTGACGCTATGGTAGAATGGG
AAATGCTATGACAAGTGGCAGGCATACGGCCAGAGTAAGACGGCTAACAT
GCTCTTCTCGGTATCACTGGCGGAGAAGGCTGGGAACAAAGGAGTGGAGT
CATTCAGTCTTTATCCTGGCCGACGAGAGACTGGCATCGGAAGACATTTG
AAGCCAGAAGAATGGGTCAAGGCTGGTATGTAGAACTTCTGATGTGACAG
CCAATTGTCCGGTAGTGTGAAGGATGCTAACTCGATGACTCAAGGGTGGA
AACATGAGGATGGAAGTATCAATGATGACCCTAAGCTGAACTGGAGAACT
GCCAGCCAGGGAGCTGCCACCTTGATTGTAGCAGCATATGATCCTAGCAA
TTCTGGTAAGCACGCTTCACCAATATGGGCGGGTAGATGGTAACGAATTG
CAGACAAAAACGGCTCGTATATGGTCAATAATCAAGTAAACAATGACGAG
GCGGTGGAATATGCTCTGGATCCGAAAAATGCAGAAAGGCTGTGGAAGCT
AAGCGAGGAGATTGTCGGCCAGAAGTTCGAATACTGA back to topCoding sequence (CDS) from alignment at ch1:3545223..3546509+ >KJC3_001373-T1 ID=KJC3_001373-T1|Name=KJC3_001373-T1|organism=Aspergillus niger KJC3|type=CDS|length=4800bp|location=Sequence derived from alignment at ch1:3545223..3546509+ (Aspergillus niger KJC3)
ATGCCATCCTTTTCCGCACAATCCACCAGTGAAGAAGTCTGCCAAGTCCT
GGCGGACCACATCAAAGGGAGCAAAGTCCTCATTACTGGCGTCACACTCG
GCAGTGTTGGCGGCGAGGCGGCTCTTCAGCTCTCCCGCCACGCGCCGGCT
CTCTTGGTCCTGGCTGGTCGCAACCTGGAGACTCTCCAGGCCACCGAAAA
TGCCATCAAAGCCGAGACACCGGATGCCAACACCCGACTGCTCATTATAG
ATTTGAGCTCGCAGGAAAGCGTCCGCAGGGCAGCTGCGGAGGTGAATAAC
TATCCAGAGCGCCTTGACCATCTTATCAACAACGCAGGCATCATGGCGGC
ACCGTACTCGACCACGCCAGAGGGAGTGGAACTGCAGTTTGGAATAAATC
ACATTGGCCACTTCCTATTCACGAACCTGCTCTTGGAGAAGATCATGAGC
GGGGAGTCCAAGGTTCGGGTCGTGAATGTCAGTAGTGCCGGCCATAAGCG
TGGACCTGTGAGGTTTGGGGATGTGAATTTCGAGAATGGGAAATGCTATG
ACAAGTGGCAGGCATACGGCCAGAGTAAGACGGCTAACATGCTCTTCTCG
GTATCACTGGCGGAGAAGGCTGGGAACAAAGGAGTGGAGTCATTCAGTCT
TTATCCTGGCCGACGAGAGACTGGCATCGGAAGACATTTGAAGCCAGAAG
AATGGGTCAAGGCTGGGTGGAAACATGAGGATGGAAGTATCAATGATGAC
CCTAAGCTGAACTGGAGAACTGCCAGCCAGGGAGCTGCCACCTTGATTGT
AGCAGCATATGATCCTAGCAATTCTGACAAAAACGGCTCGTATATGGTCA
ATAATCAAGTAAACAATGACGAGGCGGTGGAATATGCTCTGGATCCGAAA
AATGCAGAAAGGCTGTGGAAGCTAAGCGAGGAGATTGTCGGCCAGAAGTT
CGAATACTGAATGCCATCCTTTTCCGCACAATCCACCAGTGAAGAAGTCT
GCCAAGTCCTGGCGGACCACATCAAAGGGAGCAAAGTCCTCATTACTGGC
GTCACACTCGGCAGTGTTGGCGGCGAGGCGGCTCTTCAGCTCTCCCGCCA
CGCGCCGGCTCTCTTGGTCCTGGCTGGTCGCAACCTGGAGACTCTCCAGG
CCACCGAAAATGCCATCAAAGCCGAGACACCGGATGCCAACACCCGACTG
CTCATTATAGATTTGAGCTCGCAGGAAAGCGTCCGCAGGGCAGCTGCGGA
GGTGAATAACTATCCAGAGCGCCTTGACCATCTTATCAACAACGCAGGCA
TCATGGCGGCACCGTACTCGACCACGCCAGAGGGAGTGGAACTGCAGTTT
GGAATAAATCACATTGGCCACTTCCTATTCACGAACCTGCTCTTGGAGAA
GATCATGAGCGGGGAGTCCAAGGTTCGGGTCGTGAATGTCAGTAGTGCCG
GCCATAAGCGTGGACCTGTGAGGTTTGGGGATGTGAATTTCGAGAATGGG
AAATGCTATGACAAGTGGCAGGCATACGGCCAGAGTAAGACGGCTAACAT
GCTCTTCTCGGTATCACTGGCGGAGAAGGCTGGGAACAAAGGAGTGGAGT
CATTCAGTCTTTATCCTGGCCGACGAGAGACTGGCATCGGAAGACATTTG
AAGCCAGAAGAATGGGTCAAGGCTGGGTGGAAACATGAGGATGGAAGTAT
CAATGATGACCCTAAGCTGAACTGGAGAACTGCCAGCCAGGGAGCTGCCA
CCTTGATTGTAGCAGCATATGATCCTAGCAATTCTGACAAAAACGGCTCG
TATATGGTCAATAATCAAGTAAACAATGACGAGGCGGTGGAATATGCTCT
GGATCCGAAAAATGCAGAAAGGCTGTGGAAGCTAAGCGAGGAGATTGTCG
GCCAGAAGTTCGAATACTGAATGCCATCCTTTTCCGCACAATCCACCAGT
GAAGAAGTCTGCCAAGTCCTGGCGGACCACATCAAAGGGAGCAAAGTCCT
CATTACTGGCGTCACACTCGGCAGTGTTGGCGGCGAGGCGGCTCTTCAGC
TCTCCCGCCACGCGCCGGCTCTCTTGGTCCTGGCTGGTCGCAACCTGGAG
ACTCTCCAGGCCACCGAAAATGCCATCAAAGCCGAGACACCGGATGCCAA
CACCCGACTGCTCATTATAGATTTGAGCTCGCAGGAAAGCGTCCGCAGGG
CAGCTGCGGAGGTGAATAACTATCCAGAGCGCCTTGACCATCTTATCAAC
AACGCAGGCATCATGGCGGCACCGTACTCGACCACGCCAGAGGGAGTGGA
ACTGCAGTTTGGAATAAATCACATTGGCCACTTCCTATTCACGAACCTGC
TCTTGGAGAAGATCATGAGCGGGGAGTCCAAGGTTCGGGTCGTGAATGTC
AGTAGTGCCGGCCATAAGCGTGGACCTGTGAGGTTTGGGGATGTGAATTT
CGAGAATGGGAAATGCTATGACAAGTGGCAGGCATACGGCCAGAGTAAGA
CGGCTAACATGCTCTTCTCGGTATCACTGGCGGAGAAGGCTGGGAACAAA
GGAGTGGAGTCATTCAGTCTTTATCCTGGCCGACGAGAGACTGGCATCGG
AAGACATTTGAAGCCAGAAGAATGGGTCAAGGCTGGGTGGAAACATGAGG
ATGGAAGTATCAATGATGACCCTAAGCTGAACTGGAGAACTGCCAGCCAG
GGAGCTGCCACCTTGATTGTAGCAGCATATGATCCTAGCAATTCTGACAA
AAACGGCTCGTATATGGTCAATAATCAAGTAAACAATGACGAGGCGGTGG
AATATGCTCTGGATCCGAAAAATGCAGAAAGGCTGTGGAAGCTAAGCGAG
GAGATTGTCGGCCAGAAGTTCGAATACTGAATGCCATCCTTTTCCGCACA
ATCCACCAGTGAAGAAGTCTGCCAAGTCCTGGCGGACCACATCAAAGGGA
GCAAAGTCCTCATTACTGGCGTCACACTCGGCAGTGTTGGCGGCGAGGCG
GCTCTTCAGCTCTCCCGCCACGCGCCGGCTCTCTTGGTCCTGGCTGGTCG
CAACCTGGAGACTCTCCAGGCCACCGAAAATGCCATCAAAGCCGAGACAC
CGGATGCCAACACCCGACTGCTCATTATAGATTTGAGCTCGCAGGAAAGC
GTCCGCAGGGCAGCTGCGGAGGTGAATAACTATCCAGAGCGCCTTGACCA
TCTTATCAACAACGCAGGCATCATGGCGGCACCGTACTCGACCACGCCAG
AGGGAGTGGAACTGCAGTTTGGAATAAATCACATTGGCCACTTCCTATTC
ACGAACCTGCTCTTGGAGAAGATCATGAGCGGGGAGTCCAAGGTTCGGGT
CGTGAATGTCAGTAGTGCCGGCCATAAGCGTGGACCTGTGAGGTTTGGGG
ATGTGAATTTCGAGAATGGGAAATGCTATGACAAGTGGCAGGCATACGGC
CAGAGTAAGACGGCTAACATGCTCTTCTCGGTATCACTGGCGGAGAAGGC
TGGGAACAAAGGAGTGGAGTCATTCAGTCTTTATCCTGGCCGACGAGAGA
CTGGCATCGGAAGACATTTGAAGCCAGAAGAATGGGTCAAGGCTGGGTGG
AAACATGAGGATGGAAGTATCAATGATGACCCTAAGCTGAACTGGAGAAC
TGCCAGCCAGGGAGCTGCCACCTTGATTGTAGCAGCATATGATCCTAGCA
ATTCTGACAAAAACGGCTCGTATATGGTCAATAATCAAGTAAACAATGAC
GAGGCGGTGGAATATGCTCTGGATCCGAAAAATGCAGAAAGGCTGTGGAA
GCTAAGCGAGGAGATTGTCGGCCAGAAGTTCGAATACTGAATGCCATCCT
TTTCCGCACAATCCACCAGTGAAGAAGTCTGCCAAGTCCTGGCGGACCAC
ATCAAAGGGAGCAAAGTCCTCATTACTGGCGTCACACTCGGCAGTGTTGG
CGGCGAGGCGGCTCTTCAGCTCTCCCGCCACGCGCCGGCTCTCTTGGTCC
TGGCTGGTCGCAACCTGGAGACTCTCCAGGCCACCGAAAATGCCATCAAA
GCCGAGACACCGGATGCCAACACCCGACTGCTCATTATAGATTTGAGCTC
GCAGGAAAGCGTCCGCAGGGCAGCTGCGGAGGTGAATAACTATCCAGAGC
GCCTTGACCATCTTATCAACAACGCAGGCATCATGGCGGCACCGTACTCG
ACCACGCCAGAGGGAGTGGAACTGCAGTTTGGAATAAATCACATTGGCCA
CTTCCTATTCACGAACCTGCTCTTGGAGAAGATCATGAGCGGGGAGTCCA
AGGTTCGGGTCGTGAATGTCAGTAGTGCCGGCCATAAGCGTGGACCTGTG
AGGTTTGGGGATGTGAATTTCGAGAATGGGAAATGCTATGACAAGTGGCA
GGCATACGGCCAGAGTAAGACGGCTAACATGCTCTTCTCGGTATCACTGG
CGGAGAAGGCTGGGAACAAAGGAGTGGAGTCATTCAGTCTTTATCCTGGC
CGACGAGAGACTGGCATCGGAAGACATTTGAAGCCAGAAGAATGGGTCAA
GGCTGGGTGGAAACATGAGGATGGAAGTATCAATGATGACCCTAAGCTGA
ACTGGAGAACTGCCAGCCAGGGAGCTGCCACCTTGATTGTAGCAGCATAT
GATCCTAGCAATTCTGACAAAAACGGCTCGTATATGGTCAATAATCAAGT
AAACAATGACGAGGCGGTGGAATATGCTCTGGATCCGAAAAATGCAGAAA
GGCTGTGGAAGCTAAGCGAGGAGATTGTCGGCCAGAAGTTCGAATACTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001373-T1.utr5p1 | KJC3_001373-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR002347 |
| DBxref | PFAM:PF08659 |
| DBxref | PFAM:PF13561 |
| DBxref | PFAM:PF00106 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3545223..3546509 + |
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