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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3550396..3552315+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001376-T1 ID=KJC3_001376-T1|Name=KJC3_001376-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1920bp|location=Sequence derived from alignment at ch1:3550396..3552315+ (Aspergillus niger KJC3)
TACTGGTTCAGGGCAGAGTGTAGGCATCCGTCATTCTTGTTCATGGTCCG
TCGGCCTCTATTTTTAGGCACCGATCGATGCCAAAACCCTAATTAAGGGA
CAGGGACGCAGCAAGATCAGGTTATATGACCCTCCATCGGGCTGCATCTT
GTGGCCGACCAAGACGCCAGGCAAGGCTTCCCCGGCGGGGACTTCTGAAC
CAAGAAACTGACGCCGTTGTTTCCGTCCTGGAATGTCCAGAAAGAAGGTT
TGAGCTGGCGAAAATTTCTGCTGACTTCACGTGACCGTGCCTCAGGTCTC
AATCCCCCAAGGGGGCAACTTCAGAACGAATACGATGATCTCAATCCTCC
ACGCCAACCATGAACGATCAGCTGCCCATGCAGATTCGCTCGCGGAGGTC
ACACAATAAGTCCCGCGCAGGATGTCAGAATTGTAAGAAACGCCGTGTCA
AGGTAGGCCTCCAAGCTGCATCTGCCCGGTGGAAATCGGATGAACGCTTT
CAACCCTCTGCAGTACTATATATACTACTTCTCTTCTACTAGTACTATAT
GGACTATAGAGCATTTTCCACCACAATGTTGTCTATTTTTCGTGCTTTGG
CTTGCTTTATCCCCAAATCTGCCACATATGCACCCCTCTCCGGTCATACT
GACTCTCCCCAGTGTGATGAGAAAAAGCCACAATGCACCAAATGTGTGCG
ACATTCGATCGAATGTGATTTTGCTTCCCCGGCCTCGTCGACCTCCCCAG
ATCCAACCCGCCGATTCCGGTTTCGACCATCCAAATATCAACCCGGTTCA
CGAACATCACCTCCAAGCACTCATACAGAAGCTGTAAGCAGCTCAGCTGC
ATCCGCATCTACCGGAGTGCAATGTGATCTCGCCGGCAGTGGCCTTTCCG
GCGGCATCTCCTTTGCCGATCTGAAGCTCTACCACCATTTTGTGACCTCG
ACCTACAAAACCTTGACAGACGAGAAAATGGACCACAAACGCGTCTGGTC
ACATCATGTTCCGCAATGGGGTATCTCGTTCCCCTCCATCATGCATCTAA
TCCTGGCGCTGTCGGCGCTGCATCTGGCGCATGGGGATCCCGCCTCGCGC
ACGCAGTTCATCGCTCAAGCGGACGATCACTTCACCTTTGGCGTCCGATC
GGTGTCTGCTGTTCTGTGTCTGCTCAACATGGAAAACTGTCAGCTGATCT
ACATGTCTGCAGCATTGATTTGCCTGGTGTATTTCGGTCGTGGACCCCGT
CATGGCGAGTATCTGGTGTTCAGTGACACCGGTCAGTCCGAGTGGCTCGT
TCTGTTGCATGGTGTGCATTCTATCATCTCGCAAAATCATGATCGTGTCT
TCACCGGAGTTCTAGAGCCGATACCGGACAATAGTATCGGTGGGGTGAGT
GCCGAGTTGCAGGCAGAACTGGACGAGCATCTGCAGCAGGTTCGACAAGT
CCAGGCGTTTATTCTGTCCAATGTTACCGATGAAGGGTCCCGAGCTATGT
TTGAAGCTACCCTAAATGACCTGCGCTCGGCGTTCGAGGAAATATATAAG
ATGCGCAGCGCTGGGAAGGATGGCATCTGTCTGATGCATCTGGTGATAGG
GTGGGTGTACCGTCTACGGGAGGAGATGATTTCCCTGTTGGAGCAGAAGG
ACCGATACGCATTGGTTGTCTTTGGGCATTGGAGCATCTTACTGGTGTAT
ATGCGGTCATCGTGGCTGATGCAGGGATGGGATGCGCATGTGCTACATGG
GGTGCGCACGTCCTTGGGAGAGGAAGACCAGCACTGGCTTGCGTGGCCGA
TCCAGGTGATTGAAGGGGGAGCATCTACACCTACTACTTCTCTACTGTGA
TAGTTATATAATAACAGACTGTATATTCTTATCTACATATGAACGACCGG
AATAACGAATCAAATTGAAG back to topCoding sequence (CDS) from alignment at ch1:3550396..3552315+ >KJC3_001376-T1 ID=KJC3_001376-T1|Name=KJC3_001376-T1|organism=Aspergillus niger KJC3|type=CDS|length=1302bp|location=Sequence derived from alignment at ch1:3550396..3552315+ (Aspergillus niger KJC3)
ATGGACTATAGAGCATTTTCCACCACAATGTTGTCTATTTTTCGTGCTTT
GGCTTGCTTTATCCCCAAATCTGCCACATATGCACCCCTCTCCGGTCATA
CTGACTCTCCCCAGTGTGATGAGAAAAAGCCACAATGCACCAAATGTGTG
CGACATTCGATCGAATGTGATTTTGCTTCCCCGGCCTCGTCGACCTCCCC
AGATCCAACCCGCCGATTCCGGTTTCGACCATCCAAATATCAACCCGGTT
CACGAACATCACCTCCAAGCACTCATACAGAAGCTGTAAGCAGCTCAGCT
GCATCCGCATCTACCGGAGTGCAATGTGATCTCGCCGGCAGTGGCCTTTC
CGGCGGCATCTCCTTTGCCGATCTGAAGCTCTACCACCATTTTGTGACCT
CGACCTACAAAACCTTGACAGACGAGAAAATGGACCACAAACGCGTCTGG
TCACATCATGTTCCGCAATGGGGTATCTCGTTCCCCTCCATCATGCATCT
AATCCTGGCGCTGTCGGCGCTGCATCTGGCGCATGGGGATCCCGCCTCGC
GCACGCAGTTCATCGCTCAAGCGGACGATCACTTCACCTTTGGCGTCCGA
TCGGTGTCTGCTGTTCTGTGTCTGCTCAACATGGAAAACTGTCAGCTGAT
CTACATGTCTGCAGCATTGATTTGCCTGGTGTATTTCGGTCGTGGACCCC
GTCATGGCGAGTATCTGGTGTTCAGTGACACCGGTCAGTCCGAGTGGCTC
GTTCTGTTGCATGGTGTGCATTCTATCATCTCGCAAAATCATGATCGTGT
CTTCACCGGAGTTCTAGAGCCGATACCGGACAATAGTATCGGTGGGGTGA
GTGCCGAGTTGCAGGCAGAACTGGACGAGCATCTGCAGCAGGTTCGACAA
GTCCAGGCGTTTATTCTGTCCAATGTTACCGATGAAGGGTCCCGAGCTAT
GTTTGAAGCTACCCTAAATGACCTGCGCTCGGCGTTCGAGGAAATATATA
AGATGCGCAGCGCTGGGAAGGATGGCATCTGTCTGATGCATCTGGTGATA
GGGTGGGTGTACCGTCTACGGGAGGAGATGATTTCCCTGTTGGAGCAGAA
GGACCGATACGCATTGGTTGTCTTTGGGCATTGGAGCATCTTACTGGTGT
ATATGCGGTCATCGTGGCTGATGCAGGGATGGGATGCGCATGTGCTACAT
GGGGTGCGCACGTCCTTGGGAGAGGAAGACCAGCACTGGCTTGCGTGGCC
GATCCAGGTGATTGAAGGGGGAGCATCTACACCTACTACTTCTCTACTGT
GA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001376-T1.utr5p1 | KJC3_001376-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001376-T1.utr3p1 | KJC3_001376-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR001138 |
| DBxref | InterPro:IPR021858 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3550396..3552315 + |
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