You are here

Home

KJC3_001377-T1, KJC3_001377-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001377-T1
Unique NameKJC3_001377-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3552398..3553526-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001377-T1 ID=KJC3_001377-T1|Name=KJC3_001377-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1129bp|location=Sequence derived from alignment at ch1:3552398..3553526- (Aspergillus niger KJC3)
CACCATGGATCTCCTCCAGGGTCATCTTACATATAAGACCATCAATCCAG
AGATTGAGAATTTCAGACTCTCACACATCCAACCGTTCTTAGAAGCCAGA
ATCGTATTTCACTTCAGTCCGTGAACTTTCATCATGGACTTTCAATTCCA
CCCCGGTGTCAATGGCTCCGACCCTTATGTCGACTTCTATCCTTACACAC
CCTCTGCGACAGCCGGGTACGCCTTCATGGCCATTTTCGGCATTGCGACC
CTTGTCCACTTCGTCATGATGTTTCCTTACCGCGCCGCATACTTTATCCC
GCTTGTGATCGGGGGAATATGTGCGTCGAGCCCTTCTTTACCCTGTCCAC
TGCCCCAAGCCCTACCATGACATCCATCCACTCATTCATCCATCCATCTA
ACAGAATCTCCCATCAGGTGAAACCTTTGGCTACTATGGCCGTGCCTGGT
CCCACCAAGGCCGGACCCTCATCGGCCCCTGGGCCTTACAGGAGATGCTC
ATCCTCTGCGCGCCGCCCTTCATCGCCGCCACCATCTACATGATCCTCGG
ACGCATGATCGTCGCCTTCGCCGCCGAGCACCACTCCGTCATCCGGCCTA
AATGGCTCACCAAGATCTTCGTCCTCAACGACGTCATCTGCTTCCTGACG
CAGATCGCCGGTGCCGGGGTGCAAGTCACCGGTGACGAGCACCTCATGAA
AACGGGTATCAAAGCCGTCCTGGCAGGATTGATTTTCTCTCTGGTGATCT
TCCTATTGTTTGTGTGGGTGGCCGTTGTATTTCACCTGCGGTTGAGTCGC
GAGCCGACGTGGGTGGTCAATGAGAATCCGTGGTTGATGGACGGATGGAA
GCGGTATATGTGGGCGTTGTATGTGGCGTGTGGGACGTTGATGGTGAGAA
ACTTGGTCAGGACGGTGCAGTTTGGGGCCAATGAGACATCGCCCTTGAAT
ACCGAGGAGGTGTATATTTATGTGTTTGATGCCGCGTTGATGTTTGCTTC
TATGGCCGTGTTGGCGGTTTATCATCCCGGGACGTTGATTAAGAAGGCGA
GGAGGACCAAGGAGGCGGCGGAGTATTGTCAGCCCATGACAGACATTGGG
GATGAGGGGAGGGGGGCTTAAGATTTTCT
back to top

Coding sequence (CDS) from alignment at ch1:3552398..3553526-

>KJC3_001377-T1 ID=KJC3_001377-T1|Name=KJC3_001377-T1|organism=Aspergillus niger KJC3|type=CDS|length=1782bp|location=Sequence derived from alignment at ch1:3552398..3553526- (Aspergillus niger KJC3)
GTGAAACCTTTGGCTACTATGGCCGTGCCTGGTCCCACCAAGGCCGGACC
CTCATCGGCCCCTGGGCCTTACAGGAGATGCTCATCCTCTGCGCGCCGCC
CTTCATCGCCGCCACCATCTACATGATCCTCGGACGCATGATCGTCGCCT
TCGCCGCCGAGCACCACTCCGTCATCCGGCCTAAATGGCTCACCAAGATC
TTCGTCCTCAACGACGTCATCTGCTTCCTGACGCAGATCGCCGGTGCCGG
GGTGCAAGTCACCGGTGACGAGCACCTCATGAAAACGGGTATCAAAGCCG
TCCTGGCAGGATTGATTTTCTCTCTGGTGATCTTCCTATTGTTTGTGTGG
GTGGCCGTTGTATTTCACCTGCGGTTGAGTCGCGAGCCGACGTGGGTGGT
CAATGAGAATCCGTGGTTGATGGACGGATGGAAGCGGTATATGTGGGCGT
TGTATGTGGCGTGTGGGACGTTGATGGTGAGAAACTTGGTCAGGACGGTG
CAGTTTGGGGCCAATGAGACATCGCCCTTGAATACCGAGGAGGTGTATAT
TTATGTGTTTGATGCCGCGTTGATGTTTGCTTCTATGGCCGTGTTGGCGG
TTTATCATCCCGGGACGTTGATTAAGAAGGCGAGGAGGACCAAGGAGGCG
GCGGAGTATTGTCAGCCCATGACAGACATTGGGGATGAGGGGAGGGGGGC
TTAAATGGACTTTCAATTCCACCCCGGTGTCAATGGCTCCGACCCTTATG
TCGACTTCTATCCTTACACACCCTCTGCGACAGCCGGGTACGCCTTCATG
GCCATTTTCGGCATTGCGACCCTTGTCCACTTCGTCATGATGTTTCCTTA
CCGCGCCGCATACTTTATCCCGCTTGTGATCGGGGGAATATGTGAAACCT
TTGGCTACTATGGCCGTGCCTGGTCCCACCAAGGCCGGACCCTCATCGGC
CCCTGGGCCTTACAGGAGATGCTCATCCTCTGCGCGCCGCCCTTCATCGC
CGCCACCATCTACATGATCCTCGGACGCATGATCGTCGCCTTCGCCGCCG
AGCACCACTCCGTCATCCGGCCTAAATGGCTCACCAAGATCTTCGTCCTC
AACGACGTCATCTGCTTCCTGACGCAGATCGCCGGTGCCGGGGTGCAAGT
CACCGGTGACGAGCACCTCATGAAAACGGGTATCAAAGCCGTCCTGGCAG
GATTGATTTTCTCTCTGGTGATCTTCCTATTGTTTGTGTGGGTGGCCGTT
GTATTTCACCTGCGGTTGAGTCGCGAGCCGACGTGGGTGGTCAATGAGAA
TCCGTGGTTGATGGACGGATGGAAGCGGTATATGTGGGCGTTGTATGTGG
CGTGTGGGACGTTGATGGTGAGAAACTTGGTCAGGACGGTGCAGTTTGGG
GCCAATGAGACATCGCCCTTGAATACCGAGGAGGTGTATATTTATGTGTT
TGATGCCGCGTTGATGTTTGCTTCTATGGCCGTGTTGGCGGTTTATCATC
CCGGGACGTTGATTAAGAAGGCGAGGAGGACCAAGGAGGCGGCGGAGTAT
TGTCAGCCCATGACAGACATTGGGGATGAGGGGAGGGGGGCTTAAATGGA
CTTTCAATTCCACCCCGGTGTCAATGGCTCCGACCCTTATGTCGACTTCT
ATCCTTACACACCCTCTGCGACAGCCGGGTACGCCTTCATGGCCATTTTC
GGCATTGCGACCCTTGTCCACTTCGTCATGATGTTTCCTTACCGCGCCGC
ATACTTTATCCCGCTTGTGATCGGGGGAATAT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001377KJC3_001377Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001377-T1KJC3_001377-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001377-T1.cdsKJC3_001377-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001377-T1.utr3p1KJC3_001377-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001377-T1.exon2KJC3_001377-T1.exon2Aspergillus niger KJC3exon
KJC3_001377-T1.exon1KJC3_001377-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001377-T1.utr5p1KJC3_001377-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR007568
DBxrefPFAM:PF04479
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3552398..3553526 -
Powered by Drupal