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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3595732..3597536- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001397-T1 ID=KJC3_001397-T1|Name=KJC3_001397-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1805bp|location=Sequence derived from alignment at ch1:3595732..3597536- (Aspergillus niger KJC3)
GCTTGGCCGTGGAAGTGGCGTGAGCAGCCGAAGACAACAGAGAGCACGAA
TCCGGCCGCTTCTGCGCACTGACTTGCGAAGCTTCCCAAAGGGGGCCACT
GACCTTGCCCCCATATCAGACCTGCCAGGTAGGACTCGCACAGCTGCCGC
CATATTGGAAAAGAAATCTACCCTCACCATAGGTTAGGTCGCTGCTCATG
GCCTCATCGCTGTCATCTTTGGGCTTGATTGTCTCGTAGTCATATTCCGT
CGGTTCTGCTGACAATCCCAGAACTGAGTTGACCTGCGCAGCGATGCGCT
TCACTTGCTCTCGATACCGTGGTGCCTGTTTACCCGTCCGCGCTAACGGG
GTTCCGATGTGAACCTTGGTGTCGGGGCTCGGATACTCGACCCAGTTAAG
CGCTCGTCCTCTAGATTTGCATCGGAGGCCGAATAATCCAGAATCCTGGT
CTTGAATGTCTCCAGCCGCTGCAGCCCCCACGCCTAGCTTCTCCGCCGCA
ACGTCCACCGCCCCCCGGTCCTTCATCGGCCGGCGCTCACGAATACAACA
TGACCAAAGCCTCATTCCCTCAACCATTCTCACCACCCTTCCAAGAATCA
GTTCCATCTGTTTCATCACGCATAATGTCACTCCCATTTCAGGTGGTGGA
GGAGGCTAATCAGCCCTTTCTGAAGAGCTGCCGTCACGGTGACTTGGCCC
AAGTCAAGGAACATCAGAAGGCCAAGGCTCTAGACCAAGAGGTTCTGACC
TTGGGCTTGAGGGAAGCTGCCCAGGGCGATCATGTCGAAACTATGCGCTA
TCTACTGAATGCAGGCGCCAAACCCCAGTCTCCCACCGTCGTGGATGAAG
TACACTCGGCTGAGGCAGTCAAGGCTTTGCTAGACAACGGTCTTACTTTT
GAGACTCAGCTACACCCTCTAGGTACAGTGCCTCTTGTGTGGGTATCCCT
TTGCTTGCCTGTTGTTGATCACACGGACTAACCAGAGGAACAGACACATT
GTAAAGAAGAACGACCAACGGCTCGTTCACTGGTGCCTGGAACAAGGCGC
CGACCCCACCTTCGGCTGCCCGAATGTCCTGTCATTCAATGACCTTGAGA
AGCCTGATCAGTCTCCTACGAAGGGCTCAGGGGCAGTCCTTGGCATGGCA
TCCCGTCGAAGTAGCCCAGAGATTGTTGACCTCCTTCTTGATCATGGAGC
CAACATCCACAACAGTAATGTCCTACATTATGCTGCATGTAGGAGAGGCG
GACTGGCCATTCCAATGATGGAGCACCTGATACAGCGTGGGGCCGACGTG
AATGAATTCGGTTATCCTGCATTCCTACATTTCGGTGGCACTCCCCTTCA
TGCGGCCAGCTACCAAGGCAATCTCCTGGCCGTGAAGTGGCTCCTGGAGC
ATGGCGCAAACCCCGGCGTGGAAGATGCGCAAAGTAGTAAGCCGCTTGAT
CTAGCAGCTCTGGAGGAGGAATACGAAATATGTGATTTTCTCTATGAATG
GTCGCCATTGGACGACTTTGGCAAGGGTGAGAATGGTCGCTCAGGCCAGC
CGAAAGCGAACAGCTCCAGAGCATGACAGTGTCACCCGTTATTGGCTTAA
GATCTATGAGGGACAAGGAACAAAGCTTCAATAGCCCCTCCTGCTCACGT
GCACAACCTCTGTATCTAGTTCTTATACATCTCCTTCCTGCAACTTTGCA
ACACCTTCGGCCCCAAGATTGGGATGTAGTAATTGTGTTTAACCAAAATA
TCACAAAGTGATTTCCGGTTCTCCAGTCACTACGTTTACTCAGGGTGAAA
GGGCC back to topCoding sequence (CDS) from alignment at ch1:3595732..3597536- >KJC3_001397-T1 ID=KJC3_001397-T1|Name=KJC3_001397-T1|organism=Aspergillus niger KJC3|type=CDS|length=1944bp|location=Sequence derived from alignment at ch1:3595732..3597536- (Aspergillus niger KJC3)
ACACATTGTAAAGAAGAACGACCAACGGCTCGTTCACTGGTGCCTGGAAC
AAGGCGCCGACCCCACCTTCGGCTGCCCGAATGTCCTGTCATTCAATGAC
CTTGAGAAGCCTGATCAGTCTCCTACGAAGGGCTCAGGGGCAGTCCTTGG
CATGGCATCCCGTCGAAGTAGCCCAGAGATTGTTGACCTCCTTCTTGATC
ATGGAGCCAACATCCACAACAGTAATGTCCTACATTATGCTGCATGTAGG
AGAGGCGGACTGGCCATTCCAATGATGGAGCACCTGATACAGCGTGGGGC
CGACGTGAATGAATTCGGTTATCCTGCATTCCTACATTTCGGTGGCACTC
CCCTTCATGCGGCCAGCTACCAAGGCAATCTCCTGGCCGTGAAGTGGCTC
CTGGAGCATGGCGCAAACCCCGGCGTGGAAGATGCGCAAAGTAGTAAGCC
GCTTGATCTAGCAGCTCTGGAGGAGGAATACGAAATATGTGATTTTCTCT
ATGAATGGTCGCCATTGGACGACTTTGGCAAGGGTGAGAATGGTCGCTCA
GGCCAGCCGAAAGCGAACAGCTCCAGAGCATGAATGACCAAAGCCTCATT
CCCTCAACCATTCTCACCACCCTTCCAAGAATCAGTTCCATCTGTTTCAT
CACGCATAATGTCACTCCCATTTCAGGTGGTGGAGGAGGCTAATCAGCCC
TTTCTGAAGAGCTGCCGTCACGGTGACTTGGCCCAAGTCAAGGAACATCA
GAAGGCCAAGGCTCTAGACCAAGAGGTTCTGACCTTGGGCTTGAGGGAAG
CTGCCCAGGGCGATCATGTCGAAACTATGCGCTATCTACTGAATGCAGGC
GCCAAACCCCAGTCTCCCACCGTCGTGGATGAAGTACACTCGGCTGAGGC
AGTCAAGGCTTTGCTAGACAACGGTCTTACTTTTGAGACTCAGCTACACC
CTCTAGGTACAGTGCCTCTTGTACACATTGTAAAGAAGAACGACCAACGG
CTCGTTCACTGGTGCCTGGAACAAGGCGCCGACCCCACCTTCGGCTGCCC
GAATGTCCTGTCATTCAATGACCTTGAGAAGCCTGATCAGTCTCCTACGA
AGGGCTCAGGGGCAGTCCTTGGCATGGCATCCCGTCGAAGTAGCCCAGAG
ATTGTTGACCTCCTTCTTGATCATGGAGCCAACATCCACAACAGTAATGT
CCTACATTATGCTGCATGTAGGAGAGGCGGACTGGCCATTCCAATGATGG
AGCACCTGATACAGCGTGGGGCCGACGTGAATGAATTCGGTTATCCTGCA
TTCCTACATTTCGGTGGCACTCCCCTTCATGCGGCCAGCTACCAAGGCAA
TCTCCTGGCCGTGAAGTGGCTCCTGGAGCATGGCGCAAACCCCGGCGTGG
AAGATGCGCAAAGTAGTAAGCCGCTTGATCTAGCAGCTCTGGAGGAGGAA
TACGAAATATGTGATTTTCTCTATGAATGGTCGCCATTGGACGACTTTGG
CAAGGGTGAGAATGGTCGCTCAGGCCAGCCGAAAGCGAACAGCTCCAGAG
CATGAATGACCAAAGCCTCATTCCCTCAACCATTCTCACCACCCTTCCAA
GAATCAGTTCCATCTGTTTCATCACGCATAATGTCACTCCCATTTCAGGT
GGTGGAGGAGGCTAATCAGCCCTTTCTGAAGAGCTGCCGTCACGGTGACT
TGGCCCAAGTCAAGGAACATCAGAAGGCCAAGGCTCTAGACCAAGAGGTT
CTGACCTTGGGCTTGAGGGAAGCTGCCCAGGGCGATCATGTCGAAACTAT
GCGCTATCTACTGAATGCAGGCGCCAAACCCCAGTCTCCCACCGTCGTGG
ATGAAGTACACTCGGCTGAGGCAGTCAAGGCTTTGCTAGACAACGGTCTT
ACTTTTGAGACTCAGCTACACCCTCTAGGTACAGTGCCTCTTGT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001397-T1.utr3p1 | KJC3_001397-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001397-T1.utr5p1 | KJC3_001397-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036770 |
| DBxref | InterPro:IPR020683 |
| DBxref | InterPro:IPR002110 |
| DBxref | PFAM:PF13857 |
| DBxref | PFAM:PF13637 |
| DBxref | PFAM:PF13606 |
| DBxref | PFAM:PF12796 |
| DBxref | PFAM:PF00023 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3595732..3597536 - |
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