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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3759456..3761444+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001442-T1 ID=KJC3_001442-T1|Name=KJC3_001442-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1989bp|location=Sequence derived from alignment at ch1:3759456..3761444+ (Aspergillus niger KJC3)
ATGCTGCTGCTGGACCTACCGGGTGAGCTCTTACTTTGTGTCATGGACCA
TCTGGAGCGGGCCAAGGACATCCATTCTCTGTGTCTCACCAATTCGCATG
TATATCGACAGCTGTTACCGGCGCTCTATCGCTTCAACATACGATTCCAA
AACAGCTCGGCGCTGCACTGGGCAGCGCGTTATGGTAAGCTGGAACTTAT
CCAGACGATGTGTGTTTACCGGGCCCGCGTCAATGTGTATCTCCATGGCT
ACACACCTCTTCATTTTGCCGCAATGTTCGGACAGGCACCCGTTGTGAGA
TGGCTGCTCTCGTACGACGGCATCGATGTCAACTGCCGCGGCGAGGGTCT
GGGCTTGACCCCGCTTGGTGTGGCGGTGCGGAAGAAGGATGTAGAGGTTG
TTCAGGTGTTGCTTTCAGACGCCCGTACGGATATCAACGCAGGAAGCAGG
GACAACAAGACACCGCTGCTGGACGCTATCAAGCATCGGCACCTCGTCAT
TCTGCGATTGCTTCTGGCCGATGCGAGAATTGAGATGCATCCTCAGAGCC
AGTCAGCCTCGCCATTGCTGTACGCCATGCGCGCAGACTTCGGCAGCGGC
GGTCGCGCGCTCCTAGCGCATGGCGACATTGACATCTCAGCACGAGACCG
GAAGGACCGGACGGTTCTGCACTATGCTGTTCTGCGCAACGACGACGGAC
TTGTGCAGCTCTTGCTTCAGAAGCAGGACCTTGATGTGAACGCGCAGGAT
TGGCTTGGTATGACCGCCCTGCATCGTGCCATCATCAAAGACTATAGACA
GATCGCCGCCATGCTCCTGACGCGCAGTGATCTTGATGTCTCGATTTCCG
GTGCCGATGGGCACTGGAAGATATACGAAGAAATGCCGCCATTATGTCTG
GCCGTTGCCCTCCGTAGGGACCACATTTGCCAGCTTCTCCTGGAAGCTCC
TACGAATGCCGATGTTCGCACGGCAAGCGGGAATTCCCCCTTACATCTAG
CCGCAAGCATGGCGGATCTTGATTTGCTCACGCTATTGCTCAACCAACCA
GACATCAAGCTAAACGGCCGGAACGACGACGGGTTCACAGCTCTGCATGA
AGCCACAACCCGCGGGTACCTGTCCGTTGCCAAGCTGCTCCTCGCTGCGC
CAGGGGTGGATGCAAATGTGGGAGATACATGCGGGCAGACCGCACTCTGG
TGGGCGACGAAGCGCTCTGACGAGATTCTGACAAAGCGACTGCTATGCGA
AGACGACCTCGATCTTAATGTTGTAGGCCGGGATGGATCAACATCCCTTC
ATCATGCGGTCCAGTACCGGAACCGAACCATAGCACGGCTACTTCTCTGC
GAGGAGAGACTGGATATCAATGTACCGGACATGACCGGTTGGACTCCACT
TGTGTGGGCCGTGCATCAAGCGGACATCGACATGGTCAGACTGTTGCTTG
CGAGAGACGATCTGCAGCTGGATCCAATCTTCGCGGGAAACGCATCGGCA
CTGGGCCTGGCAGCGGAACGAGGCCACACCAAGATTGTGAACTTATTCCT
CGAGCACCGGGATCGCTTGGACATTAATCTCCCAACCCAGGCAGGCGAGA
CCCCACTATGCCGGGCCGCAGCAGCCGGGCATCATGATGTCGTCGATCTC
CTCCTTCAAGATCCTCAGCTGGATGTCAACCGGGCGGACCTCATTGGACG
CAGTCCGCTGTGCTGGGCGGTGTATGCGGGACATTTCAACGTTGTGAGAC
GTTTGCTTCAGGACAGAAGAGTCGTGATTGAAGGGGATTACTTCCGGCGA
CCAGCACTGGCAGCCGCTCATGAGATGGGACATGCAGAAATTGCTGATCT
TCTTAAAGCATATAGACTCGGATGACAGGTGGTACCGGCATCCTGGAGAG
CGGGTAATCTGATCGCCATCGGGCGACTCCTGATTACAGTACTACATGTT
ATCATTCGGAAACTTACGTTACATGACTGAAGTTAGCCA back to topCoding sequence (CDS) from alignment at ch1:3759456..3761444+ >KJC3_001442-T1 ID=KJC3_001442-T1|Name=KJC3_001442-T1|organism=Aspergillus niger KJC3|type=CDS|length=1875bp|location=Sequence derived from alignment at ch1:3759456..3761444+ (Aspergillus niger KJC3)
ATGCTGCTGCTGGACCTACCGGGTGAGCTCTTACTTTGTGTCATGGACCA
TCTGGAGCGGGCCAAGGACATCCATTCTCTGTGTCTCACCAATTCGCATG
TATATCGACAGCTGTTACCGGCGCTCTATCGCTTCAACATACGATTCCAA
AACAGCTCGGCGCTGCACTGGGCAGCGCGTTATGGTAAGCTGGAACTTAT
CCAGACGATGTGTGTTTACCGGGCCCGCGTCAATGTGTATCTCCATGGCT
ACACACCTCTTCATTTTGCCGCAATGTTCGGACAGGCACCCGTTGTGAGA
TGGCTGCTCTCGTACGACGGCATCGATGTCAACTGCCGCGGCGAGGGTCT
GGGCTTGACCCCGCTTGGTGTGGCGGTGCGGAAGAAGGATGTAGAGGTTG
TTCAGGTGTTGCTTTCAGACGCCCGTACGGATATCAACGCAGGAAGCAGG
GACAACAAGACACCGCTGCTGGACGCTATCAAGCATCGGCACCTCGTCAT
TCTGCGATTGCTTCTGGCCGATGCGAGAATTGAGATGCATCCTCAGAGCC
AGTCAGCCTCGCCATTGCTGTACGCCATGCGCGCAGACTTCGGCAGCGGC
GGTCGCGCGCTCCTAGCGCATGGCGACATTGACATCTCAGCACGAGACCG
GAAGGACCGGACGGTTCTGCACTATGCTGTTCTGCGCAACGACGACGGAC
TTGTGCAGCTCTTGCTTCAGAAGCAGGACCTTGATGTGAACGCGCAGGAT
TGGCTTGGTATGACCGCCCTGCATCGTGCCATCATCAAAGACTATAGACA
GATCGCCGCCATGCTCCTGACGCGCAGTGATCTTGATGTCTCGATTTCCG
GTGCCGATGGGCACTGGAAGATATACGAAGAAATGCCGCCATTATGTCTG
GCCGTTGCCCTCCGTAGGGACCACATTTGCCAGCTTCTCCTGGAAGCTCC
TACGAATGCCGATGTTCGCACGGCAAGCGGGAATTCCCCCTTACATCTAG
CCGCAAGCATGGCGGATCTTGATTTGCTCACGCTATTGCTCAACCAACCA
GACATCAAGCTAAACGGCCGGAACGACGACGGGTTCACAGCTCTGCATGA
AGCCACAACCCGCGGGTACCTGTCCGTTGCCAAGCTGCTCCTCGCTGCGC
CAGGGGTGGATGCAAATGTGGGAGATACATGCGGGCAGACCGCACTCTGG
TGGGCGACGAAGCGCTCTGACGAGATTCTGACAAAGCGACTGCTATGCGA
AGACGACCTCGATCTTAATGTTGTAGGCCGGGATGGATCAACATCCCTTC
ATCATGCGGTCCAGTACCGGAACCGAACCATAGCACGGCTACTTCTCTGC
GAGGAGAGACTGGATATCAATGTACCGGACATGACCGGTTGGACTCCACT
TGTGTGGGCCGTGCATCAAGCGGACATCGACATGGTCAGACTGTTGCTTG
CGAGAGACGATCTGCAGCTGGATCCAATCTTCGCGGGAAACGCATCGGCA
CTGGGCCTGGCAGCGGAACGAGGCCACACCAAGATTGTGAACTTATTCCT
CGAGCACCGGGATCGCTTGGACATTAATCTCCCAACCCAGGCAGGCGAGA
CCCCACTATGCCGGGCCGCAGCAGCCGGGCATCATGATGTCGTCGATCTC
CTCCTTCAAGATCCTCAGCTGGATGTCAACCGGGCGGACCTCATTGGACG
CAGTCCGCTGTGCTGGGCGGTGTATGCGGGACATTTCAACGTTGTGAGAC
GTTTGCTTCAGGACAGAAGAGTCGTGATTGAAGGGGATTACTTCCGGCGA
CCAGCACTGGCAGCCGCTCATGAGATGGGACATGCAGAAATTGCTGATCT
TCTTAAAGCATATAGACTCGGATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001442-T1.utr3p1 | KJC3_001442-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020683 |
| DBxref | InterPro:IPR036770 |
| DBxref | InterPro:IPR002110 |
| DBxref | PFAM:PF13857 |
| DBxref | PFAM:PF13637 |
| DBxref | PFAM:PF13606 |
| DBxref | PFAM:PF12796 |
| DBxref | PFAM:PF00023 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3759456..3761444 + |
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