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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3799926..3800923+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001452-T1 ID=KJC3_001452-T1|Name=KJC3_001452-T1|organism=Aspergillus niger KJC3|type=mRNA|length=998bp|location=Sequence derived from alignment at ch1:3799926..3800923+ (Aspergillus niger KJC3)
ATGTCCACTCCGCCCCGTTCCCAACCGCCCCGGGACTTCCTGCTCCATAA
GCCTCTTGCCCCTGCCCTGCGTCCCGAAACTGCTGACAGGCCTATGCCAT
TCAACACGAATGTCTCTGTATCACCTATTTTTCCCAAACAAAAGGCCTCA
GCTGCCTGTCGGGAGTGTAAGCGCTTAAAATGCAAGGTAGTAGCTCTTTT
CTCCCTACTCATGCCTTCCTAGTAATGTTGAACTTGAGATAGTGTTCCAT
TGGAAGCGGAACCACGGTGTGTGACCGATGCATCAAAAATCAGACCCTGT
GTGTCTTCGACCTAGACGAGGATATGCGACGGAAGCTATCACACAAGCGC
AAGCTTAACGAACTGGAAGCAGAGCGTGATTTTTTGCAGCAGCTGGTGAA
TACGCTGCGCGACAGCTCCGATGACAAGGCCCTGCAGCTGCTGGGTCTCA
TTCGCAGTCAAGCAACCCCTGCCGAATTACAGCTCTACATCGAAAATGCC
ATGACCGATGGGGATCGGCAGCAGAGTCCTGTGTGCGCTGACGGGTACGA
CCGCACGCGGTCGCCGTCTAATACCATAGACTTCCATCGCCCCTCCCTGC
ATCGCGCTTCGACTATCAAGCGACTGCCCAGTCCACCCGTCTATCACGTC
CCCGCAGAGCCCTGGACGTCGGTCACCAAATCCGATGATTTTGTATCATA
TCTGGTCTCACTCTGGCTTACGTGGAGTCAGCCTTTTCATAATTGGATTG
ATCGCGACCTTTTCCTCCGCGATGCTCAGACAGGAGATCTCAGTTCTCAG
TACTGTTCTCCGTTTCTGGTGAACTGCATTCTTACAGAAGCATGCGTAAG
TGCCCCGGATGATGGACTCTTTGCAGTCACTAATCACCAATTCCCTAACA
TAGTTCTATTCGGATCACCCCGAAGCCTACGCGGACCCTACCGATTGCAA
TTCAAAGGGTCTTCATTTTTTCGAGGAGGCGAAACGATGGTACGATAG back to topCoding sequence (CDS) from alignment at ch1:3799926..3800923+ >KJC3_001452-T1 ID=KJC3_001452-T1|Name=KJC3_001452-T1|organism=Aspergillus niger KJC3|type=CDS|length=1884bp|location=Sequence derived from alignment at ch1:3799926..3800923+ (Aspergillus niger KJC3)
ATGTCCACTCCGCCCCGTTCCCAACCGCCCCGGGACTTCCTGCTCCATAA
GCCTCTTGCCCCTGCCCTGCGTCCCGAAACTGCTGACAGGCCTATGCCAT
TCAACACGAATGTCTCTGTATCACCTATTTTTCCCAAACAAAAGGCCTCA
GCTGCCTGTCGGGAGTGTAAGCGCTTAAAATGCAAGTGTTCCATTGGAAG
CGGAACCACGGTGTGTGACCGATGCATCAAAAATCAGACCCTGTGTGTCT
TCGACCTAGACGAGGATATGCGACGGAAGCTATCACACAAGCGCAAGCTT
AACGAACTGGAAGCAGAGCGTGATTTTTTGCAGCAGCTGGTGAATACGCT
GCGCGACAGCTCCGATGACAAGGCCCTGCAGCTGCTGGGTCTCATTCGCA
GTCAAGCAACCCCTGCCGAATTACAGCTCTACATCGAAAATGCCATGACC
GATGGGGATCGGCAGCAGAGTCCTGTGTGCGCTGACGGGTACGACCGCAC
GCGGTCGCCGTCTAATACCATAGACTTCCATCGCCCCTCCCTGCATCGCG
CTTCGACTATCAAGCGACTGCCCAGTCCACCCGTCTATCACGTCCCCGCA
GAGCCCTGGACGTCGGTCACCAAATCCGATGATTTTGTATCATATCTGGT
CTCACTCTGGCTTACGTGGAGTCAGCCTTTTCATAATTGGATTGATCGCG
ACCTTTTCCTCCGCGATGCTCAGACAGGAGATCTCAGTTCTCAGTACTGT
TCTCCGTTTCTGGTGAACTGCATTCTTACAGAAGCATGCGTAAGTGCCCC
GGATGATGGACTCTTTGCAGTCACTAATCACCAATTCCCTAACATAGTTC
TATTCGGATCACCCCGAAGCCTACGCGGACCCTACCGATTGCAATTCAAA
GGGTCTTCATTTTTTCGAGGAGGCGAAACGATGGTACGATAGATGTCCAC
TCCGCCCCGTTCCCAACCGCCCCGGGACTTCCTGCTCCATAAGCCTCTTG
CCCCTGCCCTGCGTCCCGAAACTGCTGACAGGCCTATGCCATTCAACACG
AATGTCTCTGTATCACCTATTTTTCCCAAACAAAAGGCCTCAGCTGCCTG
TCGGGAGTGTAAGCGCTTAAAATGCAAGTGTTCCATTGGAAGCGGAACCA
CGGTGTGTGACCGATGCATCAAAAATCAGACCCTGTGTGTCTTCGACCTA
GACGAGGATATGCGACGGAAGCTATCACACAAGCGCAAGCTTAACGAACT
GGAAGCAGAGCGTGATTTTTTGCAGCAGCTGGTGAATACGCTGCGCGACA
GCTCCGATGACAAGGCCCTGCAGCTGCTGGGTCTCATTCGCAGTCAAGCA
ACCCCTGCCGAATTACAGCTCTACATCGAAAATGCCATGACCGATGGGGA
TCGGCAGCAGAGTCCTGTGTGCGCTGACGGGTACGACCGCACGCGGTCGC
CGTCTAATACCATAGACTTCCATCGCCCCTCCCTGCATCGCGCTTCGACT
ATCAAGCGACTGCCCAGTCCACCCGTCTATCACGTCCCCGCAGAGCCCTG
GACGTCGGTCACCAAATCCGATGATTTTGTATCATATCTGGTCTCACTCT
GGCTTACGTGGAGTCAGCCTTTTCATAATTGGATTGATCGCGACCTTTTC
CTCCGCGATGCTCAGACAGGAGATCTCAGTTCTCAGTACTGTTCTCCGTT
TCTGGTGAACTGCATTCTTACAGAAGCATGCGTAAGTGCCCCGGATGATG
GACTCTTTGCAGTCACTAATCACCAATTCCCTAACATAGTTCTATTCGGA
TCACCCCGAAGCCTACGCGGACCCTACCGATTGCAATTCAAAGGGTCTTC
ATTTTTTCGAGGAGGCGAAACGATGGTACGATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3799926..3800923 + |
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