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KJC3_001481-T1, KJC3_001481-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001481-T1
Unique NameKJC3_001481-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3895481..3896532-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001481-T1 ID=KJC3_001481-T1|Name=KJC3_001481-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1052bp|location=Sequence derived from alignment at ch1:3895481..3896532- (Aspergillus niger KJC3)
TATTGATCTTAGCAGAAGCTATCAGAGAGTCTTTTCTAGAATTAGACATA
TTACTTACTTTAAGCTGCAAGCAATATGGTTCCTTCGCAGGCGAAAAACC
TGAGGATCCTGGCTCCAGCTCCAGATGCAAGGCCTTCTCGAGTGACAGAC
GTGGCTGTTAGGCCAGCCAAGAGAAAATCGAATGCGTGTGATGCATGTAA
AAAAAAAAAGACCAGGGTAAGCATCAAAAATCTGCTTCTTCATTCTTCTT
CTTTTCTTTTTCTTTCCATTTTTCCTTTTATTTTTGTTCCTTTTGTTTCT
ACACAATTTCTGACTGATATATATCTACAAGTGCCGTGGAGACCACCCAT
GTGATAAATGCATTCAAGCAGGTACAGAATGCTTGTTTGCCAGAGGCGTC
GACAGACGGAAAAAACTTGCGTTGCACAATACTGAGCAGGAGCTAAATGG
TATCCGTTTGCTTCTTGATCAGTTGGTGGCCGCCTTTGACAGTGGTAATA
ACACAGATGTTCAACGGCTCATCGACATAGCAAGAAGCAAACTGAATACT
AAGAAAGATACTAAGTTGCATAAGTGGTGCAGCCTCCAGGTATACATTAA
TACTTCATCAATAAGTACACGCATGGTGCTAAATGTTACCCGAGGACCTG
CAATCACAGCTTCGCTTCTACGAGCAGCTAACCCATAATTTATCGGTGAC
ATTCGGTCCTGACGTTTCCAACTATATTGCGCATTCATTGAAGGTGAATA
CGTCTCTCACCTAATTTCAATGGGTGCTCCAAGATGAGATGTGGGATGTC
TATCTCGAAACTTGCTAAAGCTGCCGAATGCAGTAAGCAGGCGGTTAAAT
ATACCCGCTCCGACCTGCGAGTCTCCAGTTCTTCTGGAGCGCCACCAACT
CGAGTTAAGCGAGCGAAATCGATTATAATGATCATGCTGGAAGCACTATG
TTGATCCTCTCGAGGAACCTAACTTGTACTTAGATAAGATGGCAATTTTC
GTCTGGGATCGGTTTGGTCTGTAAGTAATAACCAGCAGTATAAATAATGC
GC
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Coding sequence (CDS) from alignment at ch1:3895481..3896532-

>KJC3_001481-T1 ID=KJC3_001481-T1|Name=KJC3_001481-T1|organism=Aspergillus niger KJC3|type=CDS|length=1848bp|location=Sequence derived from alignment at ch1:3895481..3896532- (Aspergillus niger KJC3)
GACCTGCAATCACAGCTTCGCTTCTACGAGCAGCTAACCCATAATTTATC
GGTGACATTCGGTCCTGACGTTTCCAACTATATTGCGCATTCATTGAAGG
TGAATACGTCTCTCACCTAAATGTTCAACGGCTCATCGACATAGCAAGAA
GCAAACTGAATACTAAGAAAGATACTAAGTTGCATAAGTGGTGCAGCCTC
CAGTGCCGTGGAGACCACCCATGTGATAAATGCATTCAAGCAGGTACAGA
ATGCTTGTTTGCCAGAGGCGTCGACAGACGGAAAAAACTTGCGTTGCACA
ATACTGAGCAGGAGCTAAATGATGGTTCCTTCGCAGGCGAAAAACCTGAG
GATCCTGGCTCCAGCTCCAGATGCAAGGCCTTCTCGAGTGACAGACGTGG
CTGTTAGGCCAGCCAAGAGAAAATCGAATGCGTGTGATGCATGTAAAAAA
AAAAAGACCAGGGACCTGCAATCACAGCTTCGCTTCTACGAGCAGCTAAC
CCATAATTTATCGGTGACATTCGGTCCTGACGTTTCCAACTATATTGCGC
ATTCATTGAAGGTGAATACGTCTCTCACCTAAATGTTCAACGGCTCATCG
ACATAGCAAGAAGCAAACTGAATACTAAGAAAGATACTAAGTTGCATAAG
TGGTGCAGCCTCCAGTGCCGTGGAGACCACCCATGTGATAAATGCATTCA
AGCAGGTACAGAATGCTTGTTTGCCAGAGGCGTCGACAGACGGAAAAAAC
TTGCGTTGCACAATACTGAGCAGGAGCTAAATGATGGTTCCTTCGCAGGC
GAAAAACCTGAGGATCCTGGCTCCAGCTCCAGATGCAAGGCCTTCTCGAG
TGACAGACGTGGCTGTTAGGCCAGCCAAGAGAAAATCGAATGCGTGTGAT
GCATGTAAAAAAAAAAAGACCAGGGACCTGCAATCACAGCTTCGCTTCTA
CGAGCAGCTAACCCATAATTTATCGGTGACATTCGGTCCTGACGTTTCCA
ACTATATTGCGCATTCATTGAAGGTGAATACGTCTCTCACCTAAATGTTC
AACGGCTCATCGACATAGCAAGAAGCAAACTGAATACTAAGAAAGATACT
AAGTTGCATAAGTGGTGCAGCCTCCAGTGCCGTGGAGACCACCCATGTGA
TAAATGCATTCAAGCAGGTACAGAATGCTTGTTTGCCAGAGGCGTCGACA
GACGGAAAAAACTTGCGTTGCACAATACTGAGCAGGAGCTAAATGATGGT
TCCTTCGCAGGCGAAAAACCTGAGGATCCTGGCTCCAGCTCCAGATGCAA
GGCCTTCTCGAGTGACAGACGTGGCTGTTAGGCCAGCCAAGAGAAAATCG
AATGCGTGTGATGCATGTAAAAAAAAAAAGACCAGGGACCTGCAATCACA
GCTTCGCTTCTACGAGCAGCTAACCCATAATTTATCGGTGACATTCGGTC
CTGACGTTTCCAACTATATTGCGCATTCATTGAAGGTGAATACGTCTCTC
ACCTAAATGTTCAACGGCTCATCGACATAGCAAGAAGCAAACTGAATACT
AAGAAAGATACTAAGTTGCATAAGTGGTGCAGCCTCCAGTGCCGTGGAGA
CCACCCATGTGATAAATGCATTCAAGCAGGTACAGAATGCTTGTTTGCCA
GAGGCGTCGACAGACGGAAAAAACTTGCGTTGCACAATACTGAGCAGGAG
CTAAATGATGGTTCCTTCGCAGGCGAAAAACCTGAGGATCCTGGCTCCAG
CTCCAGATGCAAGGCCTTCTCGAGTGACAGACGTGGCTGTTAGGCCAGCC
AAGAGAAAATCGAATGCGTGTGATGCATGTAAAAAAAAAAAGACCAGG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001481KJC3_001481Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001481-T1KJC3_001481-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001481-T1.cdsKJC3_001481-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001481-T1.utr3p1KJC3_001481-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001481-T1.exon4KJC3_001481-T1.exon4Aspergillus niger KJC3exon
KJC3_001481-T1.exon3KJC3_001481-T1.exon3Aspergillus niger KJC3exon
KJC3_001481-T1.exon2KJC3_001481-T1.exon2Aspergillus niger KJC3exon
KJC3_001481-T1.exon1KJC3_001481-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001481-T1.utr5p1KJC3_001481-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3895481..3896532 -
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