You are here

Home

KJC3_001500-T1, KJC3_001500-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001500-T1
Unique NameKJC3_001500-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3974439..3975719+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001500-T1 ID=KJC3_001500-T1|Name=KJC3_001500-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1281bp|location=Sequence derived from alignment at ch1:3974439..3975719+ (Aspergillus niger KJC3)
ATTATGGCTCACGCATGTAAGATCAGTATGCAGATTTCCTTGCAGGAATT
TTTCCTTCAGGCCCAGACTAATCGACCGATGCGTTGCGAATGAACCCAAG
GCAGCTTCATTGCATGAACAGCGAAATCCGAGATGATCCGGTGCCTGTTT
GCTCTGTTTGTTTGTCTCTTCTATATATCCGGCCAAGTCGCTTGTCTGTT
CTCTTAGCTGATCTCCGCTCTCAATACTTTGATAGACCACTATATACAAG
ACACATCCGAAAGCTCACAAATATTTTCAAGACTTATAAGCTTGTTGACC
CTCTCCTGTACCATATCCACATTAGTCACCATGGTTACATCGACACGAGA
AAGGATTAACATAGACGATCTTGTCAACCCCGCCCATGCCAACGATGGAG
AGAAGTTCTGCGACAATCGAAGGTCAGATGCTTGCAGTGAATGCTTTGCT
ACTTCTCACTGAGATAGAGTATAGACCTTCGAGTCGCTTTTCTGGAAAGA
TCAAAAAAGATACAATCACACACAAGATTCAACCTGAGTCGAGAGGGGAG
AGAATGCTGCCTCGCAAGATTTATGTTTGTCCCATGCTGGGATGCTCCAA
AAACTTTTCAACTTATGCCAAGAAAATGAATCATTTTCGCCGGAGGCACC
TTCCCAGTGCGACCGAGGACCGTCCTAAGGCACAGTTTTACAATCCACCT
AGCCTCGAAAGTCACCAAGCAGCCACCAAAGGCTGCCAGAATGGCCACAG
CTGGAATGGTGTTCGCGTGAGTTACCCAAGGCTACTGTCAGTAGTACTAC
CGTCCAATCCTATTGACAACTATTCGTGATCTACGGAGGGACAGTGGTCA
GCATATATTGGAGCCTCATGATTCAAAGCGCCAACCGGAAAAAACAAGGG
ATAAGGGCAGCATATCCCAAGAGATTGAGGATATCTTGCCTTCTGGATCC
CGCTTAGCTTTCAGCAGCGCTGTAAGATGAAAGCAATAACCAGTGATTAC
TGTATTTAGCTTCACTGGGGGTGGAATCAACGCCGCGGGCTCTTGGGGGC
GAAGGAAGAAGAGCTGGACTCAAATAACTGTGTGATTACCGTTCATACAG
TATGGATCTCACGCTCCAGCCATGCGGTCATTCAGCCATCACTTTTAGTG
CTATGCTTGCTCAAATGTTTTGTCTGCTTTATGGCGCTCATCGGAACGTG
CACTACAATAGAGTACTTTGGCCTGCTCCAAGCGTTGCATGTGCTTAACG
TGCCATGCGGGAAAGTTAGTGATCATACCTA
back to top

Coding sequence (CDS) from alignment at ch1:3974439..3975719+

>KJC3_001500-T1 ID=KJC3_001500-T1|Name=KJC3_001500-T1|organism=Aspergillus niger KJC3|type=CDS|length=2304bp|location=Sequence derived from alignment at ch1:3974439..3975719+ (Aspergillus niger KJC3)
ATGAACCCAAGGCAGCTTCATTGCATGAACAGCGAAATCCGAGATGATCC
GGTGCCTGTTTGCTCTGTTTACCACTATATACAAGACACATCCGAAAGCT
CACAAATATTTTCAAGACTTATAAGCTTGTTGACCCTCTCCTGTACCATA
TCCACATTAGTCACCATGGTTACATCGACACGAGAAAGGATTAACATAGA
CGATCTTGTCAACCCCGCCCATGCCAACGATGGAGAGAAGTTCTGCGACA
ATCGAAGACCTTCGAGTCGCTTTTCTGGAAAGATCAAAAAAGATACAATC
ACACACAAGATTCAACCTGAGTCGAGAGGGGAGAGAATGCTGCCTCGCAA
GATTTATGTTTGTCCCATGCTGGGATGCTCCAAAAACTTTTCAACTTATG
CCAAGAAAATGAATCATTTTCGCCGGAGGCACCTTCCCAGTGCGACCGAG
GACCGTCCTAAGGCACAGTTTTACAATCCACCTAGCCTCGAAAGTCACCA
AGCAGCCACCAAAGGCTGCCAGAATGGCCACAGCTGGAATGGTGTTCGCT
GGTCAGCATATATTGGAGCCTCATGAATGAACCCAAGGCAGCTTCATTGC
ATGAACAGCGAAATCCGAGATGATCCGGTGCCTGTTTGCTCTGTTTACCA
CTATATACAAGACACATCCGAAAGCTCACAAATATTTTCAAGACTTATAA
GCTTGTTGACCCTCTCCTGTACCATATCCACATTAGTCACCATGGTTACA
TCGACACGAGAAAGGATTAACATAGACGATCTTGTCAACCCCGCCCATGC
CAACGATGGAGAGAAGTTCTGCGACAATCGAAGACCTTCGAGTCGCTTTT
CTGGAAAGATCAAAAAAGATACAATCACACACAAGATTCAACCTGAGTCG
AGAGGGGAGAGAATGCTGCCTCGCAAGATTTATGTTTGTCCCATGCTGGG
ATGCTCCAAAAACTTTTCAACTTATGCCAAGAAAATGAATCATTTTCGCC
GGAGGCACCTTCCCAGTGCGACCGAGGACCGTCCTAAGGCACAGTTTTAC
AATCCACCTAGCCTCGAAAGTCACCAAGCAGCCACCAAAGGCTGCCAGAA
TGGCCACAGCTGGAATGGTGTTCGCTGGTCAGCATATATTGGAGCCTCAT
GAATGAACCCAAGGCAGCTTCATTGCATGAACAGCGAAATCCGAGATGAT
CCGGTGCCTGTTTGCTCTGTTTACCACTATATACAAGACACATCCGAAAG
CTCACAAATATTTTCAAGACTTATAAGCTTGTTGACCCTCTCCTGTACCA
TATCCACATTAGTCACCATGGTTACATCGACACGAGAAAGGATTAACATA
GACGATCTTGTCAACCCCGCCCATGCCAACGATGGAGAGAAGTTCTGCGA
CAATCGAAGACCTTCGAGTCGCTTTTCTGGAAAGATCAAAAAAGATACAA
TCACACACAAGATTCAACCTGAGTCGAGAGGGGAGAGAATGCTGCCTCGC
AAGATTTATGTTTGTCCCATGCTGGGATGCTCCAAAAACTTTTCAACTTA
TGCCAAGAAAATGAATCATTTTCGCCGGAGGCACCTTCCCAGTGCGACCG
AGGACCGTCCTAAGGCACAGTTTTACAATCCACCTAGCCTCGAAAGTCAC
CAAGCAGCCACCAAAGGCTGCCAGAATGGCCACAGCTGGAATGGTGTTCG
CTGGTCAGCATATATTGGAGCCTCATGAATGAACCCAAGGCAGCTTCATT
GCATGAACAGCGAAATCCGAGATGATCCGGTGCCTGTTTGCTCTGTTTAC
CACTATATACAAGACACATCCGAAAGCTCACAAATATTTTCAAGACTTAT
AAGCTTGTTGACCCTCTCCTGTACCATATCCACATTAGTCACCATGGTTA
CATCGACACGAGAAAGGATTAACATAGACGATCTTGTCAACCCCGCCCAT
GCCAACGATGGAGAGAAGTTCTGCGACAATCGAAGACCTTCGAGTCGCTT
TTCTGGAAAGATCAAAAAAGATACAATCACACACAAGATTCAACCTGAGT
CGAGAGGGGAGAGAATGCTGCCTCGCAAGATTTATGTTTGTCCCATGCTG
GGATGCTCCAAAAACTTTTCAACTTATGCCAAGAAAATGAATCATTTTCG
CCGGAGGCACCTTCCCAGTGCGACCGAGGACCGTCCTAAGGCACAGTTTT
ACAATCCACCTAGCCTCGAAAGTCACCAAGCAGCCACCAAAGGCTGCCAG
AATGGCCACAGCTGGAATGGTGTTCGCTGGTCAGCATATATTGGAGCCTC
ATGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001500KJC3_001500Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001500-T1KJC3_001500-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001500-T1.utr5p1KJC3_001500-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001500-T1.exon1KJC3_001500-T1.exon1Aspergillus niger KJC3exon
KJC3_001500-T1.exon2KJC3_001500-T1.exon2Aspergillus niger KJC3exon
KJC3_001500-T1.exon3KJC3_001500-T1.exon3Aspergillus niger KJC3exon
KJC3_001500-T1.exon4KJC3_001500-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001500-T1.cdsKJC3_001500-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001500-T1.utr3p1KJC3_001500-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR013087
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3974439..3975719 +
Powered by Drupal