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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:4125364..4126381- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001539-T1 ID=KJC3_001539-T1|Name=KJC3_001539-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1018bp|location=Sequence derived from alignment at ch1:4125364..4126381- (Aspergillus niger KJC3)
CAGGCTTTTCTTCTAGTTACACATATCCATTCACCAACATTCAGCTCTCT
TCAATTATCATGAAGGTCACTGCAGCTTTTGCAAGTCTCTTGCTTACGGC
CTTCGCGGCCCCTGCTCCGGAGCCTGTTCTGGTGTCGCGAAGTGCCGGTA
TCAACTACGTGCAGAACTACAACGGCAACCTTGGTGACTTCACCTACGAC
GAGAGTACCGGGACATTTTCCATGTACTGGGAGGATGGAGTCAGTTCCGA
CTTCGTCGTTGGTTTGGGCTGGACCACTGGCTCCTCTAAGTGGGTGACTG
TACCCTTTAGGCTAAATCTCTAGGATCTAACGGTTGTCAGATCTATCACC
TACTCTGCCCAATACAGCGCTTCTAGCTCCAGCTCCTACCTGGCTGTCTA
CGGCTGGGTCAACTCTCCTCAGGCCGAATACTACATCGTCGAGGATTACG
GTGATTACAACCCTTGCAGCTCGGCCACGAGCCTTGGTACCGTGTACTCT
GATGGAAGCACCTACCAAGTCTGCACCGACACTCGGACGAACGCGCCATC
TATCACAGGAACAAGCACGTTCACGCAGTACTTCTCCGTTCGTGAAAGTA
CACGCACATCCGGAACAGTGACTATCGCCAACCATTTCAATTTCTGGGCG
CAGCATGGGTTCGGCAATAGCAACTTCAATTATCAGGTCATGGCGGTGGA
GGCATGGAACGGTGCTGGCAGTGCCAGTGTCACGATATCTTCTTAAGAGA
TAAGTGCCTTAGTAGTCAAAAGATACCAAAGCTAAGCTTTTTATCGGGTG
ACGTGATGATCGGATCCGGGCTCTGGCGGTTCTATCGAGGCCGTATATGG
TGTGGCGGGACAGAGCTGTCGGCGGCTGTGTTTTCAATTTCTACAGACAA
TCAACTCTCATTTTATCCCTCTTGCTTAATCTCGCTGTTTATGTTACGCC
TTGAATATCGAATCTCAGAACTTGTGCTGAGACTCGACTCTTCATCAGAA
ATAGAAAAGTTCCACTTA back to topCoding sequence (CDS) from alignment at ch1:4125364..4126381- >KJC3_001539-T1 ID=KJC3_001539-T1|Name=KJC3_001539-T1|organism=Aspergillus niger KJC3|type=CDS|length=1272bp|location=Sequence derived from alignment at ch1:4125364..4126381- (Aspergillus niger KJC3)
ATCTATCACCTACTCTGCCCAATACAGCGCTTCTAGCTCCAGCTCCTACC
TGGCTGTCTACGGCTGGGTCAACTCTCCTCAGGCCGAATACTACATCGTC
GAGGATTACGGTGATTACAACCCTTGCAGCTCGGCCACGAGCCTTGGTAC
CGTGTACTCTGATGGAAGCACCTACCAAGTCTGCACCGACACTCGGACGA
ACGCGCCATCTATCACAGGAACAAGCACGTTCACGCAGTACTTCTCCGTT
CGTGAAAGTACACGCACATCCGGAACAGTGACTATCGCCAACCATTTCAA
TTTCTGGGCGCAGCATGGGTTCGGCAATAGCAACTTCAATTATCAGGTCA
TGGCGGTGGAGGCATGGAACGGTGCTGGCAGTGCCAGTGTCACGATATCT
TCTTAAATGAAGGTCACTGCAGCTTTTGCAAGTCTCTTGCTTACGGCCTT
CGCGGCCCCTGCTCCGGAGCCTGTTCTGGTGTCGCGAAGTGCCGGTATCA
ACTACGTGCAGAACTACAACGGCAACCTTGGTGACTTCACCTACGACGAG
AGTACCGGGACATTTTCCATGTACTGGGAGGATGGAGTCAGTTCCGACTT
CGTCGTTGGTTTGGGCTGGACCACTGGCTCCTCTAAATCTATCACCTACT
CTGCCCAATACAGCGCTTCTAGCTCCAGCTCCTACCTGGCTGTCTACGGC
TGGGTCAACTCTCCTCAGGCCGAATACTACATCGTCGAGGATTACGGTGA
TTACAACCCTTGCAGCTCGGCCACGAGCCTTGGTACCGTGTACTCTGATG
GAAGCACCTACCAAGTCTGCACCGACACTCGGACGAACGCGCCATCTATC
ACAGGAACAAGCACGTTCACGCAGTACTTCTCCGTTCGTGAAAGTACACG
CACATCCGGAACAGTGACTATCGCCAACCATTTCAATTTCTGGGCGCAGC
ATGGGTTCGGCAATAGCAACTTCAATTATCAGGTCATGGCGGTGGAGGCA
TGGAACGGTGCTGGCAGTGCCAGTGTCACGATATCTTCTTAAATGAAGGT
CACTGCAGCTTTTGCAAGTCTCTTGCTTACGGCCTTCGCGGCCCCTGCTC
CGGAGCCTGTTCTGGTGTCGCGAAGTGCCGGTATCAACTACGTGCAGAAC
TACAACGGCAACCTTGGTGACTTCACCTACGACGAGAGTACCGGGACATT
TTCCATGTACTGGGAGGATGGAGTCAGTTCCGACTTCGTCGTTGGTTTGG
GCTGGACCACTGGCTCCTCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001539-T1.utr3p1 | KJC3_001539-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001539-T1.utr5p1 | KJC3_001539-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-16) |
| Note | CAZy:GH11 |
| DBxref | InterPro:IPR013320 |
| DBxref | InterPro:IPR018208 |
| DBxref | InterPro:IPR013319 |
| DBxref | InterPro:IPR033123 |
| DBxref | InterPro:IPR001137 |
| DBxref | PFAM:PF00457 |
| Product | 4-beta-xylanase 5 |
| Product | Endo-1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:4125364..4126381 - |
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