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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:52024..52797+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001555-T1 ID=KJC3_001555-T1|Name=KJC3_001555-T1|organism=Aspergillus niger KJC3|type=mRNA|length=774bp|location=Sequence derived from alignment at ch2:52024..52797+ (Aspergillus niger KJC3)
CGCTGTGTTTGAACTTATCCTTCATCATTCTTCCTGTGTCATTCAAGCCT
GATATTTATCATGTCTCAACCATATCTGCATCCGGTGTCCCAGTCTGTCG
CGTTGTTTGAGCAATTCATTGCAACGGAGCCACAGGCCCTAGTCTTGAAG
GAGAAGGTGCTCTCTCTTTCTGGAGATAGCTTCGATATCAGGCTTGGGGA
TGGAGTGCCAATTCTGAAAGTGACTGGTACTTTGTTGTCAGTTTCCGGAC
GTAAGAAAGTCGAAGACATGGATCGCAACCATCTATTTGATATTCGCAAG
GAGCATATGCACGTTCACACAACCTATGTGTTGGAGGATCCCGATGGTAA
CAAGATATGCGAGGTCAGGAGCAGTCACAAATGTAAGCACCATCAGGTAC
ACTCCTACTGTATAACTAACCGCTATAGTTATCGGGTCGAAAGCCACTGC
CACCTGTACTGACCGATACGGCAAGCAAGTGGTCTTGGTAATGACAGGAA
ATTGGAACGATCGTGCTGCCCATATTGTTAATGAAAGTACTGGAGAAGCA
GTCGCTCGCATTTCCAAGAAGCGTTTTACCGCCAGTCATATTTTCTTTGG
CCAGGACACGTATAATGTGATTGTGGCGCCTGGTGTAGATATGGCATTGG
TCGCTGGTTTATGTATCTGCTTCGATGAGAAGAACAATGATTAGTGAGGG
AAAGGCGAACAAAATTGTATATAGACTGTGAAGTAATTATGCGATGGAGT
GGTAGAACAGGAGTAATTAAAATT back to topCoding sequence (CDS) from alignment at ch2:52024..52797+ >KJC3_001555-T1 ID=KJC3_001555-T1|Name=KJC3_001555-T1|organism=Aspergillus niger KJC3|type=CDS|length=1176bp|location=Sequence derived from alignment at ch2:52024..52797+ (Aspergillus niger KJC3)
ATGTCTCAACCATATCTGCATCCGGTGTCCCAGTCTGTCGCGTTGTTTGA
GCAATTCATTGCAACGGAGCCACAGGCCCTAGTCTTGAAGGAGAAGGTGC
TCTCTCTTTCTGGAGATAGCTTCGATATCAGGCTTGGGGATGGAGTGCCA
ATTCTGAAAGTGACTGGTACTTTGTTGTCAGTTTCCGGACGTAAGAAAGT
CGAAGACATGGATCGCAACCATCTATTTGATATTCGCAAGGAGCATATGC
ACGTTCACACAACCTATGTGTTGGAGGATCCCGATGGTAACAAGATATGC
GAGGTCAGGAGCAGTCACAAATTTATCGGGTCGAAAGCCACTGCCACCTG
TACTGACCGATACGGCAAGCAAGTGGTCTTGGTAATGACAGGAAATTGGA
ACGATCGTGCTGCCCATATTGTTAATGAAAGTACTGGAGAAGCAGTCGCT
CGCATTTCCAAGAAGCGTTTTACCGCCAGTCATATTTTCTTTGGCCAGGA
CACGTATAATGTGATTGTGGCGCCTGGTGTAGATATGGCATTGGTCGCTG
GTTTATGTATCTGCTTCGATGAGAAGAACAATGATTAGATGTCTCAACCA
TATCTGCATCCGGTGTCCCAGTCTGTCGCGTTGTTTGAGCAATTCATTGC
AACGGAGCCACAGGCCCTAGTCTTGAAGGAGAAGGTGCTCTCTCTTTCTG
GAGATAGCTTCGATATCAGGCTTGGGGATGGAGTGCCAATTCTGAAAGTG
ACTGGTACTTTGTTGTCAGTTTCCGGACGTAAGAAAGTCGAAGACATGGA
TCGCAACCATCTATTTGATATTCGCAAGGAGCATATGCACGTTCACACAA
CCTATGTGTTGGAGGATCCCGATGGTAACAAGATATGCGAGGTCAGGAGC
AGTCACAAATTTATCGGGTCGAAAGCCACTGCCACCTGTACTGACCGATA
CGGCAAGCAAGTGGTCTTGGTAATGACAGGAAATTGGAACGATCGTGCTG
CCCATATTGTTAATGAAAGTACTGGAGAAGCAGTCGCTCGCATTTCCAAG
AAGCGTTTTACCGCCAGTCATATTTTCTTTGGCCAGGACACGTATAATGT
GATTGTGGCGCCTGGTGTAGATATGGCATTGGTCGCTGGTTTATGTATCT
GCTTCGATGAGAAGAACAATGATTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001555-T1.utr5p1 | KJC3_001555-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001555-T1.utr3p1 | KJC3_001555-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR025659 |
| DBxref | InterPro:IPR007612 |
| DBxref | InterPro:IPR038595 |
| DBxref | PFAM:PF04525 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:52024..52797 + |
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