You are here

Home

KJC3_001603-T1, KJC3_001603-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001603-T1
Unique NameKJC3_001603-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:174897..176516-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001603-T1 ID=KJC3_001603-T1|Name=KJC3_001603-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1620bp|location=Sequence derived from alignment at ch2:174897..176516- (Aspergillus niger KJC3)
CTTCTCTTCTTCTTCATTTTTGTTTTAAACCATCTACTGTGTTTGAGCAT
AGTCTGCGCAAAGAACTGGAGATAATTTTCGGACAAAGTGCATATCATCT
CCGCACAGCTGGGGGCAGAATCTGATTTTTAACCAAACCGACAGACTTCT
GCCACGGGTGTTCGTTCATCAGAACTCATTAGTAGTATTGAACTTACAAT
AGAGTTATCTAGAGGCATGTAAGCTGCACACAAGAGAAAAATGTTTTTCT
CACCACCTAGAATTGCATTAGTTCGACTGGTGCTGACGAAGGATACAGAC
ACTATGTTCCGCTTTTGCATTATTCCCTCCTCTACGGCTCGGCTAACCCC
AGAAGAATAAGTAGATAAATATGTTAAAATAAATACATAATCAGAACAGA
AATGCAGATACATAAATACAAAGGAAGTATATAGAAAAGAAGGTAAAAAA
GGAAAGTAAAGAGGAAAAGTCGGGATAGAAAGAAAGAAGCGCGAGAGTTA
GCTGATAGCCCTTTCTTAACGTCGATGTGTCCGAAAGCCATTCTCTCGCC
TTTAAGGTATATTGGAGCATCTTCGCTCAGGACGAAGAAGATTTATTCAT
CGGATCAAAATAATGGTATTTTCCTGTACGAGACTTCCTATCGTTTGCAA
TACTCTCAACCTTATTTCACCTTCTACAAATGAACCGACATCTTCCGACG
GCCTACATAATATTGACACTCACGTCACTTTTGTGAGCATCCCTGACACG
AGGTATAAATGACTCGTAAAACGCTTCTCATTTCGCAAGTGACTTTCATC
ACATCACCTCCTTACTCACTAGACCGTACGTGAGCAAGCACCTCCCACAT
CCTAGAAAGTCATCATGGAAGCTACCAACGGCTACAACCACGAAGAGTGG
GAAACCTATTACGAATGGGAGCCAGAACTTGCAGCTTTCCACCAGCAGGC
CCAAGACGAGCAGGACCTTATGCTCATGCACATCAGTGAGAGGGATATAT
GCGCCTCCGTATTATTTGGGAAGCTCATCAAGATCGAATCGCTGGACAGA
TTATGCGACATCCAGATCGGACTCACTGATTTCGATGATTCGATGCACTT
CCTTGGACAAATTGACTTCTACCATGTCGTGGCTGAGCCGAGAGCCTGGC
GCCATCAGACGGCTATTGATCAACTGTTGGTTGACCTGTGCAGGCAACTG
GAAGTGTTGGTGTACATTGGTGAGTTAATCCCTTATAGCCATCTCTCGAT
GGGATGCTTGTTCGATTTACTAACTACCAGATAGTGGACAGTGCATTTGA
GTTTAGCCCTGTGCACGCCGAGCAGATGATTCTGAACGACTATGTCAAGT
GGCGCTGGTCTTTGTGCAGGGTTATGATTGATGAACTCAAATTGAGAGTG
GATGATCTGGCCATGAATTTCCAGCGTTGGGCTAGAGTGACCCCTGGGGA
TTATGCGGATATCTTTCCTGCGAATCCCCTCGACGAGGAGAAGGAAACTA
AAGCATCTGAAGCGCCGGAGGTTGAGCGACCAACTCAGATTGGGGCAGTA
GCATTTAACTAAGAGCTTCATAATGGGAAGTACGGCATATCGTATCTTTA
CTACTATATAGCAGAACACC
back to top

Coding sequence (CDS) from alignment at ch2:174897..176516-

>KJC3_001603-T1 ID=KJC3_001603-T1|Name=KJC3_001603-T1|organism=Aspergillus niger KJC3|type=CDS|length=1266bp|location=Sequence derived from alignment at ch2:174897..176516- (Aspergillus niger KJC3)
TGGACAGTGCATTTGAGTTTAGCCCTGTGCACGCCGAGCAGATGATTCTG
AACGACTATGTCAAGTGGCGCTGGTCTTTGTGCAGGGTTATGATTGATGA
ACTCAAATTGAGAGTGGATGATCTGGCCATGAATTTCCAGCGTTGGGCTA
GAGTGACCCCTGGGGATTATGCGGATATCTTTCCTGCGAATCCCCTCGAC
GAGGAGAAGGAAACTAAAGCATCTGAAGCGCCGGAGGTTGAGCGACCAAC
TCAGATTGGGGCAGTAGCATTTAACTAAATGGAAGCTACCAACGGCTACA
ACCACGAAGAGTGGGAAACCTATTACGAATGGGAGCCAGAACTTGCAGCT
TTCCACCAGCAGGCCCAAGACGAGCAGGACCTTATGCTCATGCACATCAG
TGAGAGGGATATATGCGCCTCCGTATTATTTGGGAAGCTCATCAAGATCG
AATCGCTGGACAGATTATGCGACATCCAGATCGGACTCACTGATTTCGAT
GATTCGATGCACTTCCTTGGACAAATTGACTTCTACCATGTCGTGGCTGA
GCCGAGAGCCTGGCGCCATCAGACGGCTATTGATCAACTGTTGGTTGACC
TGTGCAGGCAACTGGAAGTGTTGGTGTACATTGTGGACAGTGCATTTGAG
TTTAGCCCTGTGCACGCCGAGCAGATGATTCTGAACGACTATGTCAAGTG
GCGCTGGTCTTTGTGCAGGGTTATGATTGATGAACTCAAATTGAGAGTGG
ATGATCTGGCCATGAATTTCCAGCGTTGGGCTAGAGTGACCCCTGGGGAT
TATGCGGATATCTTTCCTGCGAATCCCCTCGACGAGGAGAAGGAAACTAA
AGCATCTGAAGCGCCGGAGGTTGAGCGACCAACTCAGATTGGGGCAGTAG
CATTTAACTAAATGGAAGCTACCAACGGCTACAACCACGAAGAGTGGGAA
ACCTATTACGAATGGGAGCCAGAACTTGCAGCTTTCCACCAGCAGGCCCA
AGACGAGCAGGACCTTATGCTCATGCACATCAGTGAGAGGGATATATGCG
CCTCCGTATTATTTGGGAAGCTCATCAAGATCGAATCGCTGGACAGATTA
TGCGACATCCAGATCGGACTCACTGATTTCGATGATTCGATGCACTTCCT
TGGACAAATTGACTTCTACCATGTCGTGGCTGAGCCGAGAGCCTGGCGCC
ATCAGACGGCTATTGATCAACTGTTGGTTGACCTGTGCAGGCAACTGGAA
GTGTTGGTGTACATTG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001603KJC3_001603Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001603-T1KJC3_001603-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001603-T1.cdsKJC3_001603-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001603-T1.utr3p1KJC3_001603-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001603-T1.exon3KJC3_001603-T1.exon3Aspergillus niger KJC3exon
KJC3_001603-T1.exon2KJC3_001603-T1.exon2Aspergillus niger KJC3exon
KJC3_001603-T1.exon1KJC3_001603-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001603-T1.utr5p2KJC3_001603-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_001603-T1.utr5p1KJC3_001603-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:174897..176516 -
Powered by Drupal