|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:516481..518720+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001725-T1 ID=KJC3_001725-T1|Name=KJC3_001725-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2240bp|location=Sequence derived from alignment at ch2:516481..518720+ (Aspergillus niger KJC3)
CTTTTCTCTCGCCGACACTTGCCCATTCCTTTGGAGCCTTCACCACCTAC
CTATCATTACCTTTCCTTCCTCGTCTTTTAGTGAATGCGAGTCGACCTAT
CCATTCTTATCTTTCGGGATACGCAGCCACCCACCCATGGTGGTCTCCGC
AAATCCCTCGACGGTATTCCTTAGCGACAGTGTCCCATTCAAGAAAAACA
AGATAAACAAACAACCTTATTCCTTCAACATTAGTACATACCCCAATCAA
ACAATATGCTTGGCGACTCCGAGATCCTCGCCTTAGATAGCAATCTTTCA
ACCATTATGCAGCAGAACCAGCAACACCATGCCGATGTCCAGAATCTCCT
GGAAAAGTTCCGCCAGCTCTTAGAGAACTATAATAACCTCAAAAGCGACT
ATGAGGAGGAAAAGGAAGCCAGAGAGAAGTACAAGCGCATGGCTAGGGGA
CAGGTACGCAGAATGATCCGTCAGTACGTACTTTGTCCAGGTCTGACGGT
GACTTAGGAGCGGAATCCTTTCGTGCTGGTCCTCGTCGATGGAGATGGCT
ATCTCGTAGGTAATCCCGGACTCTCGTCAAAGGTCATAGTTAACTCCAGC
GTAGTTTAAAGAGCATCTCCTGAAAGCTGGAGCCGATGGTGGCATTACGG
CTGCCCGGATTCTTAACGATTACATCCGCGAATTGCTCCACGATCGACTC
GGCCACCAGGCTGACCAATGCCGTGTTATGGTACGCATTTATGCAAACGT
GCTTGGACTGTCAAAGTCATTAGCCCGCTCCGGCATTGTGGGACAGGAAG
CCCGCTCTCTGTCGCCCTTTACGGCAAGCTTCACCCGGGCCGAGGATCTC
TTTGATTTCGTGGATGCGGGCGATAAGAAAGAGGGAGCCGACTATAAGAT
TAGGGGTACGAATAACTCTATGTGCCGGAGGGTTCTGAGCTGACTTCAAT
AGAAATGTTCCGCTTATTTGCCGATAATAGCCAGTGCAAACACATCTTCT
TCGCTGGTTGTCATGACTCCGGTTATTCTAATCTACTGACACCTTATCGT
GGCCGGACTGATCGCATCACTCTCCTCAAAGCTGCCAACTTTCACAGCGA
ATATGAAAGATTAGGCCTCCCGGTGCGGGAGCTTCCCGCCCTCTTCATGT
CTACACCTATTGGTGGAACTGGGAGCCCCTCCAACCATACGCCTTCGTTG
TCCACATCCTCTAGACCAATTTGTAAACACTTTCAAAAGGTGTGTGTGTG
GAAATCCATGTGCCATCGTTTGCATGTAAACTAATGTTCTCCAGGGTATT
TGCCGATACGGTAACACCTGCAACAAAGCTCACATACCGCAGGGTCAACA
ACTCTCTAGATCCGACAATACCCCCTCTCCTCCAGGAAGGGAATCTCCTA
CGAGTGCACGCACTCAAGAGTTTTATGCCTCACAACTTGTCACCCACCTC
GATCCTATGTGGCAAGATTATATCCCCATAAACTTGGCCGGAGATCGCAT
TGACACATACTGTCCGATCCCCGCCCACGATGCGTGGGAAGTCTATACTC
GCCGCGCCAAAATCCATAAGCCGTGCAACAATTTCCATCTCGGTGGCGAA
TGCAGCAATATAAGCTGTGAATACGATCACGGCCGTCTCGATCCAAGCTC
GCTGGATGTTATGAAATATATCCTCCGCCAGCACCCATGTCAGACGGGCC
CGTCGTGCCGATCTACCAAATGCTTCCTCGGCCACCTCTGTCAGAAAGAG
GGATGCCGGGGCCTCAAGCCGTGCCGCTTTAACCGACACGCACACACACT
CGATTTGCATATTGCAAAATACACGCCGTCCATCAAAAAGGAGACTGGTC
ACTCGCGTGCTGAAAGCGCCGAGGGGACATATCTACCAGATACTCCCGAA
GAGCCGCAGGGCCTAATCGTATTGTGAACGTCCAGTAGGACTATACTCAT
GGCCAACACATACTATTAAACTGCCTTATATTGAGACAGACAGACATGTG
GCAGGTTAGGACTGGACAATTGGTTATGATTCAAGAGGAAAAAAGATGAT
ATAAAAAGGGGGCACACAGGAAGGAAAAAAGCAAATGGTTTATATTGAAA
ACATGATACGGGTTAAGGCTATCACTTAACCTCACCCAAGGCGCGCAATA
GTTACTGACGAGAATGACTGAATCTATATGAAAGTTTCTCAGCCCATTTC
CTAACAGTACGTCTCACTTAGGACATGCATATGACCGGTC back to topCoding sequence (CDS) from alignment at ch2:516481..518720+ >KJC3_001725-T1 ID=KJC3_001725-T1|Name=KJC3_001725-T1|organism=Aspergillus niger KJC3|type=CDS|length=5676bp|location=Sequence derived from alignment at ch2:516481..518720+ (Aspergillus niger KJC3)
ATGCTTGGCGACTCCGAGATCCTCGCCTTAGATAGCAATCTTTCAACCAT
TATGCAGCAGAACCAGCAACACCATGCCGATGTCCAGAATCTCCTGGAAA
AGTTCCGCCAGCTCTTAGAGAACTATAATAACCTCAAAAGCGACTATGAG
GAGGAAAAGGAAGCCAGAGAGAAGTACAAGCGCATGGCTAGGGGACAGTT
TAAAGAGCATCTCCTGAAAGCTGGAGCCGATGGTGGCATTACGGCTGCCC
GGATTCTTAACGATTACATCCGCGAATTGCTCCACGATCGACTCGGCCAC
CAGGCTGACCAATGCCGTGTTATGGTACGCATTTATGCAAACGTGCTTGG
ACTGTCAAAGTCATTAGCCCGCTCCGGCATTGTGGGACAGGAAGCCCGCT
CTCTGTCGCCCTTTACGGCAAGCTTCACCCGGGCCGAGGATCTCTTTGAT
TTCGTGGATGCGGGCGATAAGAAAGAGGGAGCCGACTATAAGATTAGGGA
AATGTTCCGCTTATTTGCCGATAATAGCCAGTGCAAACACATCTTCTTCG
CTGGTTGTCATGACTCCGGTTATTCTAATCTACTGACACCTTATCGTGGC
CGGACTGATCGCATCACTCTCCTCAAAGCTGCCAACTTTCACAGCGAATA
TGAAAGATTAGGCCTCCCGGTGCGGGAGCTTCCCGCCCTCTTCATGTCTA
CACCTATTGGTGGAACTGGGAGCCCCTCCAACCATACGCCTTCGTTGTCC
ACATCCTCTAGACCAATTTGTAAACACTTTCAAAAGGGTATTTGCCGATA
CGGTAACACCTGCAACAAAGCTCACATACCGCAGGGTCAACAACTCTCTA
GATCCGACAATACCCCCTCTCCTCCAGGAAGGGAATCTCCTACGAGTGCA
CGCACTCAAGAGTTTTATGCCTCACAACTTGTCACCCACCTCGATCCTAT
GTGGCAAGATTATATCCCCATAAACTTGGCCGGAGATCGCATTGACACAT
ACTGTCCGATCCCCGCCCACGATGCGTGGGAAGTCTATACTCGCCGCGCC
AAAATCCATAAGCCGTGCAACAATTTCCATCTCGGTGGCGAATGCAGCAA
TATAAGCTGTGAATACGATCACGGCCGTCTCGATCCAAGCTCGCTGGATG
TTATGAAATATATCCTCCGCCAGCACCCATGTCAGACGGGCCCGTCGTGC
CGATCTACCAAATGCTTCCTCGGCCACCTCTGTCAGAAAGAGGGATGCCG
GGGCCTCAAGCCGTGCCGCTTTAACCGACACGCACACACACTCGATTTGC
ATATTGCAAAATACACGCCGTCCATCAAAAAGGAGACTGGTCACTCGCGT
GCTGAAAGCGCCGAGGGGACATATCTACCAGATACTCCCGAAGAGCCGCA
GGGCCTAATCGTATTGTGAATGCTTGGCGACTCCGAGATCCTCGCCTTAG
ATAGCAATCTTTCAACCATTATGCAGCAGAACCAGCAACACCATGCCGAT
GTCCAGAATCTCCTGGAAAAGTTCCGCCAGCTCTTAGAGAACTATAATAA
CCTCAAAAGCGACTATGAGGAGGAAAAGGAAGCCAGAGAGAAGTACAAGC
GCATGGCTAGGGGACAGTTTAAAGAGCATCTCCTGAAAGCTGGAGCCGAT
GGTGGCATTACGGCTGCCCGGATTCTTAACGATTACATCCGCGAATTGCT
CCACGATCGACTCGGCCACCAGGCTGACCAATGCCGTGTTATGGTACGCA
TTTATGCAAACGTGCTTGGACTGTCAAAGTCATTAGCCCGCTCCGGCATT
GTGGGACAGGAAGCCCGCTCTCTGTCGCCCTTTACGGCAAGCTTCACCCG
GGCCGAGGATCTCTTTGATTTCGTGGATGCGGGCGATAAGAAAGAGGGAG
CCGACTATAAGATTAGGGAAATGTTCCGCTTATTTGCCGATAATAGCCAG
TGCAAACACATCTTCTTCGCTGGTTGTCATGACTCCGGTTATTCTAATCT
ACTGACACCTTATCGTGGCCGGACTGATCGCATCACTCTCCTCAAAGCTG
CCAACTTTCACAGCGAATATGAAAGATTAGGCCTCCCGGTGCGGGAGCTT
CCCGCCCTCTTCATGTCTACACCTATTGGTGGAACTGGGAGCCCCTCCAA
CCATACGCCTTCGTTGTCCACATCCTCTAGACCAATTTGTAAACACTTTC
AAAAGGGTATTTGCCGATACGGTAACACCTGCAACAAAGCTCACATACCG
CAGGGTCAACAACTCTCTAGATCCGACAATACCCCCTCTCCTCCAGGAAG
GGAATCTCCTACGAGTGCACGCACTCAAGAGTTTTATGCCTCACAACTTG
TCACCCACCTCGATCCTATGTGGCAAGATTATATCCCCATAAACTTGGCC
GGAGATCGCATTGACACATACTGTCCGATCCCCGCCCACGATGCGTGGGA
AGTCTATACTCGCCGCGCCAAAATCCATAAGCCGTGCAACAATTTCCATC
TCGGTGGCGAATGCAGCAATATAAGCTGTGAATACGATCACGGCCGTCTC
GATCCAAGCTCGCTGGATGTTATGAAATATATCCTCCGCCAGCACCCATG
TCAGACGGGCCCGTCGTGCCGATCTACCAAATGCTTCCTCGGCCACCTCT
GTCAGAAAGAGGGATGCCGGGGCCTCAAGCCGTGCCGCTTTAACCGACAC
GCACACACACTCGATTTGCATATTGCAAAATACACGCCGTCCATCAAAAA
GGAGACTGGTCACTCGCGTGCTGAAAGCGCCGAGGGGACATATCTACCAG
ATACTCCCGAAGAGCCGCAGGGCCTAATCGTATTGTGAATGCTTGGCGAC
TCCGAGATCCTCGCCTTAGATAGCAATCTTTCAACCATTATGCAGCAGAA
CCAGCAACACCATGCCGATGTCCAGAATCTCCTGGAAAAGTTCCGCCAGC
TCTTAGAGAACTATAATAACCTCAAAAGCGACTATGAGGAGGAAAAGGAA
GCCAGAGAGAAGTACAAGCGCATGGCTAGGGGACAGTTTAAAGAGCATCT
CCTGAAAGCTGGAGCCGATGGTGGCATTACGGCTGCCCGGATTCTTAACG
ATTACATCCGCGAATTGCTCCACGATCGACTCGGCCACCAGGCTGACCAA
TGCCGTGTTATGGTACGCATTTATGCAAACGTGCTTGGACTGTCAAAGTC
ATTAGCCCGCTCCGGCATTGTGGGACAGGAAGCCCGCTCTCTGTCGCCCT
TTACGGCAAGCTTCACCCGGGCCGAGGATCTCTTTGATTTCGTGGATGCG
GGCGATAAGAAAGAGGGAGCCGACTATAAGATTAGGGAAATGTTCCGCTT
ATTTGCCGATAATAGCCAGTGCAAACACATCTTCTTCGCTGGTTGTCATG
ACTCCGGTTATTCTAATCTACTGACACCTTATCGTGGCCGGACTGATCGC
ATCACTCTCCTCAAAGCTGCCAACTTTCACAGCGAATATGAAAGATTAGG
CCTCCCGGTGCGGGAGCTTCCCGCCCTCTTCATGTCTACACCTATTGGTG
GAACTGGGAGCCCCTCCAACCATACGCCTTCGTTGTCCACATCCTCTAGA
CCAATTTGTAAACACTTTCAAAAGGGTATTTGCCGATACGGTAACACCTG
CAACAAAGCTCACATACCGCAGGGTCAACAACTCTCTAGATCCGACAATA
CCCCCTCTCCTCCAGGAAGGGAATCTCCTACGAGTGCACGCACTCAAGAG
TTTTATGCCTCACAACTTGTCACCCACCTCGATCCTATGTGGCAAGATTA
TATCCCCATAAACTTGGCCGGAGATCGCATTGACACATACTGTCCGATCC
CCGCCCACGATGCGTGGGAAGTCTATACTCGCCGCGCCAAAATCCATAAG
CCGTGCAACAATTTCCATCTCGGTGGCGAATGCAGCAATATAAGCTGTGA
ATACGATCACGGCCGTCTCGATCCAAGCTCGCTGGATGTTATGAAATATA
TCCTCCGCCAGCACCCATGTCAGACGGGCCCGTCGTGCCGATCTACCAAA
TGCTTCCTCGGCCACCTCTGTCAGAAAGAGGGATGCCGGGGCCTCAAGCC
GTGCCGCTTTAACCGACACGCACACACACTCGATTTGCATATTGCAAAAT
ACACGCCGTCCATCAAAAAGGAGACTGGTCACTCGCGTGCTGAAAGCGCC
GAGGGGACATATCTACCAGATACTCCCGAAGAGCCGCAGGGCCTAATCGT
ATTGTGAATGCTTGGCGACTCCGAGATCCTCGCCTTAGATAGCAATCTTT
CAACCATTATGCAGCAGAACCAGCAACACCATGCCGATGTCCAGAATCTC
CTGGAAAAGTTCCGCCAGCTCTTAGAGAACTATAATAACCTCAAAAGCGA
CTATGAGGAGGAAAAGGAAGCCAGAGAGAAGTACAAGCGCATGGCTAGGG
GACAGTTTAAAGAGCATCTCCTGAAAGCTGGAGCCGATGGTGGCATTACG
GCTGCCCGGATTCTTAACGATTACATCCGCGAATTGCTCCACGATCGACT
CGGCCACCAGGCTGACCAATGCCGTGTTATGGTACGCATTTATGCAAACG
TGCTTGGACTGTCAAAGTCATTAGCCCGCTCCGGCATTGTGGGACAGGAA
GCCCGCTCTCTGTCGCCCTTTACGGCAAGCTTCACCCGGGCCGAGGATCT
CTTTGATTTCGTGGATGCGGGCGATAAGAAAGAGGGAGCCGACTATAAGA
TTAGGGAAATGTTCCGCTTATTTGCCGATAATAGCCAGTGCAAACACATC
TTCTTCGCTGGTTGTCATGACTCCGGTTATTCTAATCTACTGACACCTTA
TCGTGGCCGGACTGATCGCATCACTCTCCTCAAAGCTGCCAACTTTCACA
GCGAATATGAAAGATTAGGCCTCCCGGTGCGGGAGCTTCCCGCCCTCTTC
ATGTCTACACCTATTGGTGGAACTGGGAGCCCCTCCAACCATACGCCTTC
GTTGTCCACATCCTCTAGACCAATTTGTAAACACTTTCAAAAGGGTATTT
GCCGATACGGTAACACCTGCAACAAAGCTCACATACCGCAGGGTCAACAA
CTCTCTAGATCCGACAATACCCCCTCTCCTCCAGGAAGGGAATCTCCTAC
GAGTGCACGCACTCAAGAGTTTTATGCCTCACAACTTGTCACCCACCTCG
ATCCTATGTGGCAAGATTATATCCCCATAAACTTGGCCGGAGATCGCATT
GACACATACTGTCCGATCCCCGCCCACGATGCGTGGGAAGTCTATACTCG
CCGCGCCAAAATCCATAAGCCGTGCAACAATTTCCATCTCGGTGGCGAAT
GCAGCAATATAAGCTGTGAATACGATCACGGCCGTCTCGATCCAAGCTCG
CTGGATGTTATGAAATATATCCTCCGCCAGCACCCATGTCAGACGGGCCC
GTCGTGCCGATCTACCAAATGCTTCCTCGGCCACCTCTGTCAGAAAGAGG
GATGCCGGGGCCTCAAGCCGTGCCGCTTTAACCGACACGCACACACACTC
GATTTGCATATTGCAAAATACACGCCGTCCATCAAAAAGGAGACTGGTCA
CTCGCGTGCTGAAAGCGCCGAGGGGACATATCTACCAGATACTCCCGAAG
AGCCGCAGGGCCTAATCGTATTGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001725-T1.utr5p1 | KJC3_001725-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001725-T1.utr3p1 | KJC3_001725-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_2.4 |
| DBxref | InterPro:IPR000571 |
| DBxref | PFAM:PF00642 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:516481..518720 + |
|
