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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:521461..523369- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001727-T1 ID=KJC3_001727-T1|Name=KJC3_001727-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1909bp|location=Sequence derived from alignment at ch2:521461..523369- (Aspergillus niger KJC3)
GAAACCACCCAAGTATAAGATATCCATTTTCTCCTACAGCAAGCTAGTCG
ACTGCCATTGTACAAATCCCGACTGCTTATCTTGCTGCCATGGTGCACCC
GGTTAGGTCTCTCAACAAAGAGCTCGATCGTAAGTGTAAATGGAATAAGT
AATGTTTCCCGCTAACAGCTCGTAGAGGTCGACACCGAATCGAGAGGTTA
TCGATCGTCTGACACAACGGAGGGCGGATCTTCCAAGGTCGAAGACGGTG
ATGAGCCTATCGAAGAGACCTCCAGGAGGGGCGTCTCTCGCAACAAAAGT
CATGGAACTCAACGCACAAATTTCTCGCGAAACAAAAGCCATGCCAGTCA
CCGCACTGGCGTATCTCAAAATCAGAGTTATCGAAGCCAGCCTCCCGCTA
CCCTGAGGAACCAAAGCTATGGGAGTCAAGCACAGTTCTCCCTGGCAGGT
CCGAATGCGTATTATGGACCACTACCTCAACAGGGCGCCTACATGCATCC
GGAGTATCAGTCATTTAATCCTCAATACGGAAACATGCAAGGGGACAAGC
CTGTCTGGAGTCTAGCGCAGCCGCTGCCCCATGTTGTCCGAGACGGAATG
CGGTATGGAGCCTTGCCGGAGGATCGAAAGGAAGAAAGAGACGAGGATGG
ACGAGAACGCCCGCCTCCAGCGTCAGAAGAGCCGCCCACGGATATTCCGA
AGACGGATGAAGCTAGAGAGAATGGCGAAGAGCCCCAGAATGAGATGGGA
TTTTTCAATAAGTGGTCCAAGATTCGATATTATCTGAGGGAGCCATTGGG
CGAGTGGTTGGGGGTGAGTATTCACTTGGACTATCTATTCTAATACAGCC
CAAACTAACACACAATCACCAGACAACCATCGCCATCACTCTCGGTCTCT
GCGGCGGGTTGTCAACCTACACATCGGACGGCCAAGCCGGCTCATGGATG
ACCCAGAGTGCCTGTTGGGGCTTCAGCTTCATGATCGGCATCTACATTGT
TGGTGGCATCTCCGGTGGCCACCTCAATCCCGCCATCACAATCTCCATGT
CCCTCTGGCGAGGATTTCCCGCCCGCCGATGTGTTATTTACATCCTCGCT
CAGCTGATCGGCGCCATCACCGCCGGCGGATTCGCCTACGCCATTTACCA
CGACGCCATCGTCAACCTCTCCGTCGAGACCAACCTCCCACAAAGCGAAA
CAACAGCTAGCCAAGCATTTCTAACTCTACCAAAACAATTCGTCAGTCCA
GCTACTGCATTCTTCAATGAGTTCCTAGGCACCGCTATTCTCGTCGGAAC
CATCATGGCCTTGGGTGACGACACCAACGCCCCCCCAGGAGCAGGAATGC
AAGCATTCATCATCGGCATACTGATCACCGTATTAGTCCTTGCCCTAGGA
TATAACACAGGCGGGTACGTACCCCCTCTCTCCCCCACCCCAGAAGCCCC
GACGACTAATAATTACCAAGAGCATTCAACGGCCCCCGCGACTTCGGCCC
CCGGCTCGTCGCCGTAATGGCCGGGTGGGGCGGACACCTCTTCAAAGAGT
ACCATGCCTGGTGGATCTGGGGCCCTTGGGTCGCCGACATCTTCGGAGGA
TTGTTCGGGGCGTTCATCTACGATTTAGTGGTGTTCACTGGTGGCGAAAG
CCCGATCAATTACCCGCCGAGGAGACGCAAGCGCGCACTGCTGATCAAGG
AGAAGAATCTGAGAAGCAAGTTGCGTTTTGGGAGGAGGAAGATCGGGGAT
ATTGAGAGGGCAGTTGAGGAGAACCAGGATTGATTTTGTGAAATTGTATG
TATTAGAATGTGGTCTTACAGTTGAGCATGCAGTATACGTGGCATCGAAT
TAGCCTGGAGTTCCGTTTATCTTGCATTTGGAGTTACAGAAAAGTCTTTT
ATTTCCAAT back to topCoding sequence (CDS) from alignment at ch2:521461..523369- >KJC3_001727-T1 ID=KJC3_001727-T1|Name=KJC3_001727-T1|organism=Aspergillus niger KJC3|type=CDS|length=6132bp|location=Sequence derived from alignment at ch2:521461..523369- (Aspergillus niger KJC3)
AGCATTCAACGGCCCCCGCGACTTCGGCCCCCGGCTCGTCGCCGTAATGG
CCGGGTGGGGCGGACACCTCTTCAAAGAGTACCATGCCTGGTGGATCTGG
GGCCCTTGGGTCGCCGACATCTTCGGAGGATTGTTCGGGGCGTTCATCTA
CGATTTAGTGGTGTTCACTGGTGGCGAAAGCCCGATCAATTACCCGCCGA
GGAGACGCAAGCGCGCACTGCTGATCAAGGAGAAGAATCTGAGAAGCAAG
TTGCGTTTTGGGAGGAGGAAGATCGGGGATATTGAGAGGGCAGTTGAGGA
GAACCAGGATTGAACAACCATCGCCATCACTCTCGGTCTCTGCGGCGGGT
TGTCAACCTACACATCGGACGGCCAAGCCGGCTCATGGATGACCCAGAGT
GCCTGTTGGGGCTTCAGCTTCATGATCGGCATCTACATTGTTGGTGGCAT
CTCCGGTGGCCACCTCAATCCCGCCATCACAATCTCCATGTCCCTCTGGC
GAGGATTTCCCGCCCGCCGATGTGTTATTTACATCCTCGCTCAGCTGATC
GGCGCCATCACCGCCGGCGGATTCGCCTACGCCATTTACCACGACGCCAT
CGTCAACCTCTCCGTCGAGACCAACCTCCCACAAAGCGAAACAACAGCTA
GCCAAGCATTTCTAACTCTACCAAAACAATTCGTCAGTCCAGCTACTGCA
TTCTTCAATGAGTTCCTAGGCACCGCTATTCTCGTCGGAACCATCATGGC
CTTGGGTGACGACACCAACGCCCCCCCAGGAGCAGGAATGCAAGCATTCA
TCATCGGCATACTGATCACCGTATTAGTCCTTGCCCTAGGATATAACACA
GGCGGAGGTCGACACCGAATCGAGAGGTTATCGATCGTCTGACACAACGG
AGGGCGGATCTTCCAAGGTCGAAGACGGTGATGAGCCTATCGAAGAGACC
TCCAGGAGGGGCGTCTCTCGCAACAAAAGTCATGGAACTCAACGCACAAA
TTTCTCGCGAAACAAAAGCCATGCCAGTCACCGCACTGGCGTATCTCAAA
ATCAGAGTTATCGAAGCCAGCCTCCCGCTACCCTGAGGAACCAAAGCTAT
GGGAGTCAAGCACAGTTCTCCCTGGCAGGTCCGAATGCGTATTATGGACC
ACTACCTCAACAGGGCGCCTACATGCATCCGGAGTATCAGTCATTTAATC
CTCAATACGGAAACATGCAAGGGGACAAGCCTGTCTGGAGTCTAGCGCAG
CCGCTGCCCCATGTTGTCCGAGACGGAATGCGGTATGGAGCCTTGCCGGA
GGATCGAAAGGAAGAAAGAGACGAGGATGGACGAGAACGCCCGCCTCCAG
CGTCAGAAGAGCCGCCCACGGATATTCCGAAGACGGATGAAGCTAGAGAG
AATGGCGAAGAGCCCCAGAATGAGATGGGATTTTTCAATAAGTGGTCCAA
GATTCGATATTATCTGAGGGAGCCATTGGGCGAGTGGTTGGGGATGGTGC
ACCCGGTTAGGTCTCTCAACAAAGAGCTCGATCAGCATTCAACGGCCCCC
GCGACTTCGGCCCCCGGCTCGTCGCCGTAATGGCCGGGTGGGGCGGACAC
CTCTTCAAAGAGTACCATGCCTGGTGGATCTGGGGCCCTTGGGTCGCCGA
CATCTTCGGAGGATTGTTCGGGGCGTTCATCTACGATTTAGTGGTGTTCA
CTGGTGGCGAAAGCCCGATCAATTACCCGCCGAGGAGACGCAAGCGCGCA
CTGCTGATCAAGGAGAAGAATCTGAGAAGCAAGTTGCGTTTTGGGAGGAG
GAAGATCGGGGATATTGAGAGGGCAGTTGAGGAGAACCAGGATTGAACAA
CCATCGCCATCACTCTCGGTCTCTGCGGCGGGTTGTCAACCTACACATCG
GACGGCCAAGCCGGCTCATGGATGACCCAGAGTGCCTGTTGGGGCTTCAG
CTTCATGATCGGCATCTACATTGTTGGTGGCATCTCCGGTGGCCACCTCA
ATCCCGCCATCACAATCTCCATGTCCCTCTGGCGAGGATTTCCCGCCCGC
CGATGTGTTATTTACATCCTCGCTCAGCTGATCGGCGCCATCACCGCCGG
CGGATTCGCCTACGCCATTTACCACGACGCCATCGTCAACCTCTCCGTCG
AGACCAACCTCCCACAAAGCGAAACAACAGCTAGCCAAGCATTTCTAACT
CTACCAAAACAATTCGTCAGTCCAGCTACTGCATTCTTCAATGAGTTCCT
AGGCACCGCTATTCTCGTCGGAACCATCATGGCCTTGGGTGACGACACCA
ACGCCCCCCCAGGAGCAGGAATGCAAGCATTCATCATCGGCATACTGATC
ACCGTATTAGTCCTTGCCCTAGGATATAACACAGGCGGAGGTCGACACCG
AATCGAGAGGTTATCGATCGTCTGACACAACGGAGGGCGGATCTTCCAAG
GTCGAAGACGGTGATGAGCCTATCGAAGAGACCTCCAGGAGGGGCGTCTC
TCGCAACAAAAGTCATGGAACTCAACGCACAAATTTCTCGCGAAACAAAA
GCCATGCCAGTCACCGCACTGGCGTATCTCAAAATCAGAGTTATCGAAGC
CAGCCTCCCGCTACCCTGAGGAACCAAAGCTATGGGAGTCAAGCACAGTT
CTCCCTGGCAGGTCCGAATGCGTATTATGGACCACTACCTCAACAGGGCG
CCTACATGCATCCGGAGTATCAGTCATTTAATCCTCAATACGGAAACATG
CAAGGGGACAAGCCTGTCTGGAGTCTAGCGCAGCCGCTGCCCCATGTTGT
CCGAGACGGAATGCGGTATGGAGCCTTGCCGGAGGATCGAAAGGAAGAAA
GAGACGAGGATGGACGAGAACGCCCGCCTCCAGCGTCAGAAGAGCCGCCC
ACGGATATTCCGAAGACGGATGAAGCTAGAGAGAATGGCGAAGAGCCCCA
GAATGAGATGGGATTTTTCAATAAGTGGTCCAAGATTCGATATTATCTGA
GGGAGCCATTGGGCGAGTGGTTGGGGATGGTGCACCCGGTTAGGTCTCTC
AACAAAGAGCTCGATCAGCATTCAACGGCCCCCGCGACTTCGGCCCCCGG
CTCGTCGCCGTAATGGCCGGGTGGGGCGGACACCTCTTCAAAGAGTACCA
TGCCTGGTGGATCTGGGGCCCTTGGGTCGCCGACATCTTCGGAGGATTGT
TCGGGGCGTTCATCTACGATTTAGTGGTGTTCACTGGTGGCGAAAGCCCG
ATCAATTACCCGCCGAGGAGACGCAAGCGCGCACTGCTGATCAAGGAGAA
GAATCTGAGAAGCAAGTTGCGTTTTGGGAGGAGGAAGATCGGGGATATTG
AGAGGGCAGTTGAGGAGAACCAGGATTGAACAACCATCGCCATCACTCTC
GGTCTCTGCGGCGGGTTGTCAACCTACACATCGGACGGCCAAGCCGGCTC
ATGGATGACCCAGAGTGCCTGTTGGGGCTTCAGCTTCATGATCGGCATCT
ACATTGTTGGTGGCATCTCCGGTGGCCACCTCAATCCCGCCATCACAATC
TCCATGTCCCTCTGGCGAGGATTTCCCGCCCGCCGATGTGTTATTTACAT
CCTCGCTCAGCTGATCGGCGCCATCACCGCCGGCGGATTCGCCTACGCCA
TTTACCACGACGCCATCGTCAACCTCTCCGTCGAGACCAACCTCCCACAA
AGCGAAACAACAGCTAGCCAAGCATTTCTAACTCTACCAAAACAATTCGT
CAGTCCAGCTACTGCATTCTTCAATGAGTTCCTAGGCACCGCTATTCTCG
TCGGAACCATCATGGCCTTGGGTGACGACACCAACGCCCCCCCAGGAGCA
GGAATGCAAGCATTCATCATCGGCATACTGATCACCGTATTAGTCCTTGC
CCTAGGATATAACACAGGCGGAGGTCGACACCGAATCGAGAGGTTATCGA
TCGTCTGACACAACGGAGGGCGGATCTTCCAAGGTCGAAGACGGTGATGA
GCCTATCGAAGAGACCTCCAGGAGGGGCGTCTCTCGCAACAAAAGTCATG
GAACTCAACGCACAAATTTCTCGCGAAACAAAAGCCATGCCAGTCACCGC
ACTGGCGTATCTCAAAATCAGAGTTATCGAAGCCAGCCTCCCGCTACCCT
GAGGAACCAAAGCTATGGGAGTCAAGCACAGTTCTCCCTGGCAGGTCCGA
ATGCGTATTATGGACCACTACCTCAACAGGGCGCCTACATGCATCCGGAG
TATCAGTCATTTAATCCTCAATACGGAAACATGCAAGGGGACAAGCCTGT
CTGGAGTCTAGCGCAGCCGCTGCCCCATGTTGTCCGAGACGGAATGCGGT
ATGGAGCCTTGCCGGAGGATCGAAAGGAAGAAAGAGACGAGGATGGACGA
GAACGCCCGCCTCCAGCGTCAGAAGAGCCGCCCACGGATATTCCGAAGAC
GGATGAAGCTAGAGAGAATGGCGAAGAGCCCCAGAATGAGATGGGATTTT
TCAATAAGTGGTCCAAGATTCGATATTATCTGAGGGAGCCATTGGGCGAG
TGGTTGGGGATGGTGCACCCGGTTAGGTCTCTCAACAAAGAGCTCGATCA
GCATTCAACGGCCCCCGCGACTTCGGCCCCCGGCTCGTCGCCGTAATGGC
CGGGTGGGGCGGACACCTCTTCAAAGAGTACCATGCCTGGTGGATCTGGG
GCCCTTGGGTCGCCGACATCTTCGGAGGATTGTTCGGGGCGTTCATCTAC
GATTTAGTGGTGTTCACTGGTGGCGAAAGCCCGATCAATTACCCGCCGAG
GAGACGCAAGCGCGCACTGCTGATCAAGGAGAAGAATCTGAGAAGCAAGT
TGCGTTTTGGGAGGAGGAAGATCGGGGATATTGAGAGGGCAGTTGAGGAG
AACCAGGATTGAACAACCATCGCCATCACTCTCGGTCTCTGCGGCGGGTT
GTCAACCTACACATCGGACGGCCAAGCCGGCTCATGGATGACCCAGAGTG
CCTGTTGGGGCTTCAGCTTCATGATCGGCATCTACATTGTTGGTGGCATC
TCCGGTGGCCACCTCAATCCCGCCATCACAATCTCCATGTCCCTCTGGCG
AGGATTTCCCGCCCGCCGATGTGTTATTTACATCCTCGCTCAGCTGATCG
GCGCCATCACCGCCGGCGGATTCGCCTACGCCATTTACCACGACGCCATC
GTCAACCTCTCCGTCGAGACCAACCTCCCACAAAGCGAAACAACAGCTAG
CCAAGCATTTCTAACTCTACCAAAACAATTCGTCAGTCCAGCTACTGCAT
TCTTCAATGAGTTCCTAGGCACCGCTATTCTCGTCGGAACCATCATGGCC
TTGGGTGACGACACCAACGCCCCCCCAGGAGCAGGAATGCAAGCATTCAT
CATCGGCATACTGATCACCGTATTAGTCCTTGCCCTAGGATATAACACAG
GCGGAGGTCGACACCGAATCGAGAGGTTATCGATCGTCTGACACAACGGA
GGGCGGATCTTCCAAGGTCGAAGACGGTGATGAGCCTATCGAAGAGACCT
CCAGGAGGGGCGTCTCTCGCAACAAAAGTCATGGAACTCAACGCACAAAT
TTCTCGCGAAACAAAAGCCATGCCAGTCACCGCACTGGCGTATCTCAAAA
TCAGAGTTATCGAAGCCAGCCTCCCGCTACCCTGAGGAACCAAAGCTATG
GGAGTCAAGCACAGTTCTCCCTGGCAGGTCCGAATGCGTATTATGGACCA
CTACCTCAACAGGGCGCCTACATGCATCCGGAGTATCAGTCATTTAATCC
TCAATACGGAAACATGCAAGGGGACAAGCCTGTCTGGAGTCTAGCGCAGC
CGCTGCCCCATGTTGTCCGAGACGGAATGCGGTATGGAGCCTTGCCGGAG
GATCGAAAGGAAGAAAGAGACGAGGATGGACGAGAACGCCCGCCTCCAGC
GTCAGAAGAGCCGCCCACGGATATTCCGAAGACGGATGAAGCTAGAGAGA
ATGGCGAAGAGCCCCAGAATGAGATGGGATTTTTCAATAAGTGGTCCAAG
ATTCGATATTATCTGAGGGAGCCATTGGGCGAGTGGTTGGGGATGGTGCA
CCCGGTTAGGTCTCTCAACAAAGAGCTCGATC back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0015267 | channel activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001727-T1.utr3p1 | KJC3_001727-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001727-T1.utr5p1 | KJC3_001727-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR022357 |
| DBxref | InterPro:IPR023271 |
| DBxref | InterPro:IPR000425 |
| DBxref | PFAM:PF00230 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:521461..523369 - |
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